Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->YAB1                                                                                       --------->ICU4                                                                                       <---------ATHB12                                                                                    --------->MYB46(3)                                                                                --------->MYB46(3) ---------HSFB2a(1)                                                         ------>ZmHOX2a(2) ---------HSFC1(2)                                                         <------ZmHOX2a(2) -------->HSFC1(2)                                                        --------->ARR14(2) -------->HSFB2a(1)                                                       <-----------ARR10 --------TOE2(2)                                                      <---------LBD16--------->WOX13(1) --------TOE1(2)                  <---------ATHB12                   --------->ALFIN1--------->YAB1 --DEAR3(1)      <---------At4g35610     --------->LBD16          ------->TEIL --------->AtLEC2 --ETT(2)        --------->At4g35610    <---------ANAC46   <------ZmHOX2a(2)<-------TEIL<---------ICU4 ->DEAR3(1)     <-----------RAV1(1)--------->YAB1      --------->ALFIN1   <---------ARR14(2)     <---   gaaggttctcccatagttgtgctgcatcggaaacaaatgataccgtagaacgaataggtggatcaatggatgtgcggatccatccaacaatcatggagtt  17254500                               <---------ZAT2                               --------->ZAT2                               <---------At4g35610                               --------->At4g35610                             <-----------RAV1(2)                            --------->LBD16                            --------->At4g35610                                            --------->ANAC55(2)                            <---------At4g35610                                --------->ANAC58 <----                            <------NtERF2                                      --------->ANAC46 -----                        --------->ARR14(2)                                     --------->ANAC58<-----                        <---------PCF5                           --------->HSFC1(2)        <---------ANAC46                        <---------TCP16(1)                       <---------HSFC1(2)        <---------ANAC55(2)      <---------ZAT18   <---------SPL7                          --------->ANAC58          <---------LBD16      --------->ZAT14   <---------ARR14(2)               ---------->DOF2      <---------LBD16  ------ --------RAV1(1)    <---------LBD16          <---------MYB46(3) --------->ANAC58         --------->MYB52(1)   tgtggcagtccacatacttagttcggggtccgcagctggttttgtgatggttccatcgatgaagccaagcttctgtttagcacggagtgagttacggagt  17254600                                                                                               <-----                                                                                               <-----                                                             --------->ATHB12                  <-----                                                            <---------YAB1                    -------                                                ---------->DOF2                 --------->ARR11(1)                                              ===================HOX2a_HOX2a    <---------ARR11(3)                                              <------ZmHOX2a(2)                 --------->ARR11(3)                                      ------->GAMYB       <------ZmHOX2a(1)     --------->ARR14(2)          --------->YAB1             <---------------------WRI1      <-------TEIL            <------- -----ARR11(3)                      --------->MYB52(1)    =============HOX2a_HOX2a          --------- ---->ARR11(3)                     --------->MYB52(1)  <-----------RAV1(2)      <---------ARR14(2) ----GLK1(1)                      --------->MYB46(3) ----------->RAV1(1)      ----------->ARR10<----- --->GLK1(1)              <----------DOF2    <---------ARR11(3) ------>ZmHOX2a(2)--------->CCA1(2)   tcttcagaccattcagagtagttgttttcttttaaaacaaccgaagagatcaaagcaccaggatgatcggatgcattgagaagatatggagttgatgacg  17254700       --------->ALFIN1            <-------TEIL       <---------REM1(1)          --------->ARR14(1)     <------MYB83                 --------->GLK1(2)     <------MYB46(1)             --------->ARR14(2) <---------REM1(1)               <---------GLK1(2) ----ANAC58                      --------->ARR11(1) ----bZIP60(2)                   <---------ARR14(2) ----ANAC46              <---------ZAT18 ---->STF1            <---------ANAC46  <---------ETT(2) --TGA2(2)         <-----------RAV1(1)  --------->ETT(2) -->TGA1          --------->ARR11(3)--------->MYB59 --------->ZAT14                      ---------->DOF2 ----ANAC58  <---------REM1(1) ----------->ARR10    <---------ZAT14          ---------->DOF2       --   tagatgtaggtgtagatgtagatgttgtggacgcagattcggtagacatcgtagagtagtgagtttaatagaaatttgtaaaagaagaatagaaagatga  17254800       <---------ARR14(2)      <-------GAMYB                                --------->DAG2      <---------AHL20(2)     <---------MYB46(3)                           --------->DAG2       --------->AHL20(2)     --------->MYB55(2)        <---------MYB52(1)---------->DOF2       --------->AHL20(1)         ---    --------->ALFIN1 ------->GAMYB          ---------->DOF2            <---------YAB1       *TSS  <--  ------->GAMYB     --------->ANAC46   <---------HSFB2a(2)            --------->AHL20(2) --------->AHL20(2) ------->MYB52(1) --------->MYB52(1)   --------->HSFB2a(2)         <---------GLK1(2)  --------->TOE2(3)   gcaacggtggttacgaagaacaacggcatctctgtttttttttagaaaaagaaaagggaattagtcatagaattttattgctctgataccataaaatatg  17254900                                                                           <---------ARR11(1)                                                                           <---------ARR14(2)                                                                           ------->TEIL                                                                           <-----------ARR10                                                             --------->ANAC46                                                  <---------GLK1(1)        --------->ARR14(2)      <---------ANAC58                           <---------ARR14(2)       <---------ARR14(1)      <---------ANAC58                           --------->ARR14(2) --------->DAG2                  <  ---------->DOF2                               <------ZmHOX2a(1) --------->CCA1(2)           <------ -------->GT1--------->KAN4(2)        <---------AHL20(2)   --------->CCA1(2)              <---------TOE2(3) -------ANAC46  ------------>CBF    <-----------TBP      --------->CCA1(2)<---------CCA1(2)  --------   tcgtaaaagcttgtttattccaatagcacaagagaagtatttatacaagaggatttgtgatatacgagataaggtcgtatcttactaaatctaagattca  17255000                                ---------->DOF2                            >>>>>>>>>MYB2                     --------->At4g35610                                       <---------TOE1(3)<---- -------TEIL      ----------->HVH21                                       ----------->GT1     ------- -TEIL          <---------ANAC55(2)                               ---------->DOF2 <----------DOF2  <- ->CCA1(2)      --------->ANAC55(2)   ---------->DOF2  <-----------GT1   --------->DAG2  ---------->DOF2   catacatcttagtctaatacatgacctgaaaaccaaaagagaaagagaattgttttttaacttgagaaaaaaggaaaggttaagctttgttgaaaggagg  17255100                    ----------->GT1                    <------MYB46(1)                    <---------ANAC46                    <------MYB83                   --------->MYB111(1)                                                              <                   --------->MYB111(2)                                                             <-                   <---------MYB46(3)                                                          <-----       <---------ARR11(3)                                                                    ------>MYB83       --------->ARR11(3) <---------GLK1(1)                                                  ------>MYB46(1) --ZmHOX2a(1)      --------->MYB59<-------TEIL                 --------->YAB1            --------->ARR11(3) -->ALFIN1         --------->MYB46(2)    ------>MYB83  ---------->DOF2                   <---------ARR11(3) -----ZmHOX2a(1)   <---------AtMYB61     ------>MYB46(1) <---------TOE2(3)         <---------At4g35610   aggagacaatatcgtcgaggtttggtagaaatcaggttcgacctatcaaatcgtggacaaaggtatcaaaattttcagagattgtagctaagacctacag  17255200        <---------DAG2        <----------DOF2       <----------DOF2       <---------DAG2     ------->TEIL   ------->MYC4   ------->MYC2   <-------MYC3                                    <---------ANAC46   ------->MYC3                                    <---------ANAC58   <-------MYC2  --------->ARR14(2)                <---------ANAC58                             <---- ---------ANAC55(1)   --------->ATHB12    --------->At5g28300                           <---------MYB46(3) ------TEIL      <---------ARR14(2)      ----------->GT1                    <----------DOF2 <-------- ----ZAT6     <---------ANAC46           <----------DOF2             <----------DOF2   <-------------   ttacatgtgcctttttgcgaatattgatttgagttaaactgggctgtaatttcgcttgtactactcttgggcttttctctttgtacaaggttgttcggct  17255300                                            --------->AHL20(1)                                            --------->AHL20(2)                                            <---------AHL20(1)                 --------->ETT(2)      --------->AHL20(2)  <---------AHL20(2)               *TSS                 <---------ETT(2)   ----------->GT1       --------->AHL20(2)     --------->ANAC46     --------->AHL20(2)            ----------->GT1  --------->ANAC46             --------->ANAC58 ------DOF2   <------MYB83       ------>MYB46(1) <---------ARR14(2)              --------->ANAC58 -RAP2.6(2)   <------MYB46(1)    ------>MYB83    --------->ARR14(2)         <---------------AtSPL8 --AtSPL3    --------->MYB59    --------->MYB52(1) --------->MYB46(3)   <------------CBF   <---------   tttctaatgaaatatttggtcgacaaaaaaaaaccaactgttaaaatataatatccaccattaaatctgaaaaacattgaggcacgaaactattttccaa  17255400  Previous    Next  AGI:  At1g46552.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.6e-184 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 17250299    to: 17254892    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g46554.1    Description:  other RNA Range:  from: 17255392    to: 17256343    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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