Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------AHL20(2)             --------->AHL20(2)                                                --------->LBD16      <---------ARR14(2)                                                      <---------ANAC46      --------->ARR14(2)                                                      <---------LBD16     <---------GLK1(1)                                                        <---------ANAC58     <---------CCA1(2)                                                        <---------ANAC58     --------->GLK1(1)                                                  <---------DAG2 -------->DAG2                                      xxxxxxxxxxxxxxxx>smallRNA(s)   <-------TEIL -------->DOF2<---------YAB1                     <-----------HVH21      <----------DOF2 -------->AGL15  <---------YAB1            --------->MYB52(1)    <-----------RAV1(2)               -- ---------AGL15  <---------TOE2(3)      --------->YAB1   <-----------HVH21   <---------LBD16  -------   aaaaagcatatccatttttatggtagcccatggtttttgaaagaataacgctgtcataccatcaggccctggtgctttttccgggtgcatcaaaaacaaa  17076600                                                                                                 <---                                                                                                 ----                                                                                               <-----                                                                                       --------->LBD16                               <---------MYB52(1)                                     --------->ANAC46                             ----------->GT1                ---------->DOF2           --------->ANAC55(2)                             <---------ANAC46             <---------YAB1              <---------ANAC55(2)                            <------NtERF2              <---------MYB52(1)            <---------LBD16                        --------->At4g35610          ----------->GT1               --------->ARR14(2)                 <-----------RAV1(1)                ------>ZmHOX2a(2)      --------->YAB1  --------->KAN4(1)        --------->TOE2(3) --------->ALFIN1  <---------AHL20(2)      <-----------GT1--------->GLK1(2) ------->RAP2.6(2)    <-----------RAV1(2)   --------->AHL20(2)     <-----------GT1<---------GLK1(2) --->DOF2        =================RAV      --------->AHL20(2)<---------TOE2(3)---------->DOF2--------   gccgctcttacctcatcttctgtagcaggtgtcgttaagaagtcatttatttgatccgttattaaagttttaacctctgataaagattccgcaatattct  17076700                                                                                                   <-                                                              ------>ZmHOX2a(1)                  ==== --------->ARR14(2)                                           --------->At4g35610                ---- <---------ARR14(2)                                 --------->ARR11(3)                          xxxxx ------LBD16                                <xxxxxxxxxxxxxxxxsmallRNA(s)               --------->YAB1 ----->LBD16                                <-----------RAV1(1)                        <---------ICU4 ----LBD16       ---------->DOF2        <----------DOF2<----------DOF2                --------->ICU4 ->GLK1(2)  --------->AHL20(2) --------->ANAC46     <---------ARR11(3)              --------->YAB1<--   ggggattcgacttattaaacaaagtctcaaaataagacaccgctatatgttggacatctttatcctctgcaaaccattttccattttcatcatgaagtcc  17076800                                                                  --------->TOE2(3)           ------>ZmHOX2a(1)                                      --------->TOE1(3)   ===============HOX2a_HOX2a                                   ------>MYB83               <---------   ------>ZmHOX2a(2)                                            -------->P                 --------->HSFB2a(2) --------ATHB12                                             --------->ANAC46               <---------HSFB2a(2) =========HOX2a_HOX2a                       <---------AHL20(1)  ------>MYB46(1)       <----------DOF2 -->ZmHOX2a(1)                              --------->AHL20(1) <---------ALFIN1       <---------DAG2 xxxxxxxxxxx>smallRNA(i)<---------MYB52(1)  --------->ARR11(3)<---------ALFIN1     ------>ZmHOX2a(1) -------TOE1(2)   <---------CCA1(2)   ----------->GT1  <---------YAB1    --------->TOE2(3) ----------   tatgatccgattcctagcccgtctctgttttgttagagcatggaaatattttgagttattatccccaaccttcatccataaactcctacttttctggtac  17076900                                                                         --------->YAB1          ----                                                 <---------MYB52(1)--------->HSFC1(1)  ------>NtERF2                                      <---------ZAT6               --------->HSFB2a(2) --------->LBD16                                 ------->GAMYB   --------->DOF5.7(2)    <---------ATHB12 ------->TEIL ------AtSPL8              ------>ZmHOX2a(1)------------>MYB.PH3(1)<---------HSFB2a(2)--------->RAP2.6(2) ----->AtSPL8       --------->ANAC46  ----------->GT1    ------>ZmHOX2a(1) --------->At4g35610  *TSS   caatattgttcttcatctatataagcctccttcaaccgtattgttaaatccgttatctcctcacttgttctcgaatcatctctctgtgccgcatctatga  17077000                                                                    <------------CBF                                                               --------->ZAT18                                <------------CBF               <---------ZAT18                              <---------AHL20(2)           ------>ZmHOX2a(1)                   <-----     --------->AHL20(2)     <----------DOF2          ------>ZmHOX2a(2)                         ====== --->TEIL            ------->TEIL                    =============HOX2a_HOX2a     <---------YAB1  <--   actcatttttaatatgaactatgaactcatcttttattgcagtagggaaaactgatctatcctcgtgtgctattgatatggattatttttgtagtggatc  17077100               --------->At4g35610           ------>MYB46(1)           -------->P ----------->RAV1(2)          ------>ZmHOX2a(1) -------->P------>MYB83  --------->At4g35610                                                      --- -ZmHOX2a(2)   --------->ZAT2                                                       <---------ETT(2) ================HOX2a_HOX2a          ----------->HVH21                             ----------->HVH21 -------MYB52(2)<-----------ARR10     ----------->TGA1  <---------ZAT6              --------->ETT(2)   actaaccaagtcctaccagctctaacctgctgtatgcagtctgacgcttgttcaagtagagtcactatgtgtctatgctagtcccatcgacaggcctact  17077200                                   ------>ZmHOX2a(2)                        --------->REM1(1)     <------NtERF2               <---------AGP1                            <-------TEIL    ------>NtERF2           <----------DOF2                             --------->ZAT2   --------->ANAC58        <---------ANAC58                             <---------At4g35610   --------->ANAC58        <---------ANAC58                             --------->At4g35610 <---------ANAC58     --------->At4g35610                             <---------WRKY12 <---------ANAC58     --------->ZAT2 ---------->DOF2                <-----------HVH21 <---------bZIP60(2)  <---------At4g35610                   ------->TEIL<---------ZAT2 -------->HVH21     <---------DEAR3(1)               --------->ICU4--------->ANAC46         <--------   ctgacgcgcctagagggaacgagcggctggctttggatctaaagagcatagggaaatgtttgaatctacaggtcagcttcatcttctcttgttttctctg  17077300                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------bZIP60(2)                                                                        <---------TGA2(2)                                                                       ----------->TGA1                                                                     --------->ANAC46                                                                     --------->ANAC55(2)                                                                     <---------ANAC58                                                                     --------->O2                                                                     ================================                                                                     <---------O2                                                               --------->CCA1(2)                                                              --------->ARR11(3)                                                              <---------ARR11(3) ----------->GT1                                                --------->ANAC58     <---------ANAC58                                                --------->ANAC58     --------->TGA1a                -               --------->YAB1                   --------->ANAC46     <---------TGA1a           <-----   --------->ARR11(3)              <---------MYB46(3)   =======================bZIP_DOF      <------- ---GT1      <---------TOE2(3)  --------->TOE1(2)       ---------->DOF2----------->HVH21     --------   tttcagttcttgttcaaggataaaaacagagaaacgttggataaaacttcaaggaacttaaagagatatagacgtgacgtagatggagaaatatgagctg  17077400                                                                                                    -          <-----------GT1                                         <-----------GT1                   - ==========bZIP_DOF                                               <---------ICU4                  --- --------->DOF2        <---------ANAC55(2)         --------->GLK1(1)  <---------ZAT14             --- ----MYB46(3)          --------->ANAC55(2)     <---------ZAT6    <---------ATHB12<---------ICU4   --- --At4g35610         <-----------GT1      --------->YAB1  --------->ZAT14     --------->YAB1     ---- ->At4g35610      <---------ZAT6  <-----------GT1  <---------GLK1(1)  --------->ZAT14       <--------   ttgaaagtgatttttccatagtattacataacattttcacacatttatagtggaaatcagagaactaatcactgctctgttcataactacatattttcaa  17077500  Previous    Next  AGI:  At1g45140.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.4e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 17073798    to: 17076996    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g45145.1    Description:  ATTRX5 (thioredoxin H-type 5); thiol-disulfide exchange intermediate. Identical to Thioredoxin H-type 5 (TRX5) [Arabidopsis Thaliana] (GB:Q39241;GB:Q38881;GB:Q9MAJ6); similar to ATTRX3 (thioredoxin H-type 3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G42980.1); similar to thioredoxin h1 [Glycine max] (GB:ABV71991.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxi Range:  from: 17077382    to: 17078770    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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