Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->At4g35610                                                                    <------ZmHOX2a(2)                                                                   <---------ARR14(2)                                                                   --------->ARR14(2)                                                                   <---------ARR11(3)                                                                   --------->GLK1(2)                                                                   <---------AGP1                                                                   <-----------ARR10                                                                  <---------CCA1(2)                                                                  <---------ARR14(1)                                                                 --------->LBD16                                                               <---------LBD16                                                             ------>MYB83                                                             ------>MYB46(1)                                           ================================HOX2a_HOX2a                                           =================================HOX2a_HOX2a                                 --------->TOE1(3)         --------->AtMYB61                                 --------->TOE2(3)         <---------MYB59                      --------->SPL7       <------ZmHOX2a(1) --------->MYB52(1)--------->TOE2(3)                    <---------SPL7  ----------->HVH21   ====================HOX2a_HOX2a                <----------DOF2  --------->TOE2(2)      ===================HOX2a_HOX2a              <              <---------HSFC1(2) --------->TOE1(2)<---------At4g35610------>ZmHOX2a(2)           <---              --------->HSFC1(2)<---------HSFB2a(1)     <------ZmHOX2a(1)      --------->TOE1(3)<----   tacaacgttgctaagaagctttggtacgaagacaaccttcgacgaggaatgcttctgaggaccaaaccggatctgaagaaaccttcactgatgagtttat  17054600                                                       <---------ANAC46                                                     <---------ANAC58                                                     <---------ANAC58           <-------GAMYB                          <----------DOF2     <---------WRKY12                          --------->ARR11(3)   <-----------HVH21                        <-----------GT1 ---------At4g35610                    <---------ARR11(3)                                     <------ ------At4g35610                >>>>>>>>>TBF1  <---------ARR11(3)                <---------YAB1     < -------RAV1(1)        <---------YAB1  --------->ARR11(3)<---------YAB1    <----------DOF2<---------RAP2.6(2)   gctgcggtcagagggttacccttctctgatagaagaagaaagattttaagctctttggtgtgatagaatgtgcaactctttttgttattagttcggcttt  17054700                                                   <---------YAB1                                                 --------->GLK1(1)                                                 --------->CCA1(2)                                                 --------->ARR14(1)                                                 <---------GLK1(1)                                                <---------ARR11(3)                 <---------TOE2(3)              --------->ARR11(3)           ------>ZmHOX2a(1)                  ----------->ARR10          ----------->GT1            <           --------->LBD16                    <---------TOE2(3)     <---------ANAC58             <---        <------ZmHOX2a(2)            --------->TOE1(3)         <---------AtLEC2                  <---       <---------ARR14(2)            --------->TOE2(3)    <----------DOF2<---------ZAT6          ----       --------->ARR14(2)      --------->ANAC58 <---------ARR14(2)  <---------ANAC58            <----       --------->ARR11(3)      --------->ANAC58 --------->ARR11(1)  <---------ANAC46       --------->TOE2(3) ----DOF2------>ZmHOX2a(2)     --------->ANAC46 --------->ARR14(2)--------->ARR11(3)    <-----------GT1 ---------AHL20(2)            ------->TEIL<---------At4g35610<---------YAB1      <-----------GT1-----   atattatgggatcctggttaagtttttgtctgaacgtaaccttaagctaagatatgcttacttttgaatgtcttggtgttaaatcactatataccttcat  17054800   <---------MYB59   --------->TOE1(3)   --------->TOE2(3)  <---------ANAC55(2) -----------GT1                 ---------->ID1        <---------TOE2(2)                       ------- -----HAHB4                 <----------DOF2      ------->GAMYB                              <------ZmHOX2a(2) ------ICU4            --------->DOF5.7(2)      --------->MYB46(3)                          ========= ----->ATHB51         --------->TOE1(3)        -------->P                                  <---------ARR14(2) -----YAB1            --------->TOE2(3)    <---------At4g35610         --------->ANAC46    --------->ARR14(2) ---->ICU4            <----------DOF2      --------->At4g35610         ------->GAMYB ---------->DOF2   tattacctaaacgtataaaaaaaactttaactttgtcgaaatcgctgctaaccacataggtattaagttctaaccgaaacaaaaccaaaaaccgatccat  17054900                <-------GAMYB               <------MYB46(1)               <------MYB83              --------->MYB59          <------MYB46(1)          <---------DEAR3(2)          <------MYB83         --------->MYB59     <---------MYB46(3)                                                                             -   <---------MYB52(1)                             --------------->AGL15                             <  ------>ZmHOX2a(1) <---------TOE1(3)            ----------------->AGL3                            --  <----------DOF2<---------MYB52(1)       ---------->DOF2                 *TSS                 ------ -->TOE2(3) <---------MYB52(1)       --------->At4g35610             --------->CCA1(2)         <----- ========HOX2a_HOX2a<---------TOE2(3)----------->GT1        <----------DOF2         --------->TOE1(3)   aatcctttggttcggttcggttagggtttatgagacagaagctaaaaagacaccatttttagctttggaagataaacagagaagaagcttaacacagaga  17055000                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                           --------->ANAC46                                                                              --------->GLK1(2)------            <---------ANAC46                                                 <---------GLK1(2)-------    --------->LBD16                                                          <---------ARR14(2)<-----   <---------LBD16                                                     --------->ZAT14     --------->DEAR3(1)  <---------LBD16                                                      --------->WRKY12    ------->GAMYB <---------ANAC58          <---------ANAC58                            --------->WRKY38(1)<---------MYB55(2) <---------ANAC58          --------------------->WRI1                  <---------ZAT14    --------->DEAR3(2) -------->ZAT18            <---------ANAC58   --------->ZAT6          <---------MYB52(1)  --------->MYB46(3) ---------ZAT14            <---------ANAC46 --------->SPL7            <-----------HVH21 <---------ALFIN1 ------->ALFIN1       ---------->ID1        ------->TEIL   <---------GLK1(2) --------->ARR14(2)------ --->ZAT14  <---------ANAC58            --------------->AtSPL8      <---------ANAC58   --------->MYB46(3) ----ZAT14  <---------ANAC58      <----------DOF2 --------->ZAT14   <---------ANAC58 --------->ANAC46   agtgcgcgggaatggcgagagtttgtcttccttgttctttccttcgtacctctactctctcgattctcttccgttcaccgattctctccacaaccgccgc  17055100   --------------------->WRI1 -->RAP2.3(2) -->RRTF1(2) -->RAP2.3(3) -->RRTF1(3) -->ANAC58                  ------>NtERF2 -->ANAC58             --------->ZAT18 -->ANAC46           --------->GLK1(1) -->DEAR3(1)         <---------GLK1(1) ->RRTF1(1)        <------NtERF2                                   <-----------GT1 ->RAP2.3(1)     <---------DEAR3(1)        --------->YAB1----------->GT1               <------ZmHOX2a(2) --->LBD16      <------NtERF2         XXXXXXXXXXXXXXXXXXXX>MIR169H-N               --------->HSFB2a(2) -->RAP2.6(2) <---------DEAR3(1)  --------->ZAT14        <---------ANAC55(2)       <---------HSFB2a(2) -NtERF2 <---------ANAC58  --------->DEAR3(1)           >>>>>>>>>>AtSR1  <---------CCA1(2) >NtERF2 <---------ANAC58 --------->ORA47(2) <---------YAB1   --------->ICU4      <---------LBD16   <   aatttcattttgctcgtcgtcggagttcgccgactctgtagccaaggatgattcaaaacgcgtaaaaattcactcatctctgtttctggatcaaattcga  17055200                                                                                                    -                                                                                                    <                <-----------GT1          ------>ZmHOX2a(1)                       <---------GLK1(1)<--              <---------ANAC58       <---------ZAT18                 <---------GLK1(1)         <-----              <---------ANAC58       --------->ARR14(2)              --------->GLK1(1)      ---------        <---------TOE2(3)            <---------ARR14(2)<----------DOF2       --------->YAB1 <--------        <---------TOE1(3)     <----------DOF2   ----------->RAV1(2) --------->ARR14(2)     --------->ARR11(3)    <----------DOF2      <---------At4g35610  --------->ANAC58      <---------ARR14(2)     <---------ARR11(3) ---------TOE2(3)        --------->At4g35610  --------->ANAC58 <-----------HVH21 --------->GLK1(1)<--   ttacggttttagggtttcttacaatttagctgctttcagggtcctctcaagcctgggctttacctcgtcggaactccaatcggaaacctcgaagatatca  17055300                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                 ----                                                                                                 ====                                                                                                <----                                                                                                -----                                                                                                =====                                                                                               <-----  --------------->AtSPL8                                                                       ------  --------------->AtSPL3                                                                       ------  --------->ANAC46                                                                             <----- -------->MYB52(1)             <---------AtLEC2                                                ------ -----------GT1            <----------DOF2                                                    <------ --------DOF2         <---------HSFC1(2)                                            <---------ANAC58 ------GT1            --------->HSFC1(2)                                            <---------ANAC58 >GLK1(1)       <-----------ARR10                           --------->ICU4          <---------ANAC46 -GLK1(1)       --------->ARR11(3)                   --------->GLK1(1)             <-------TEIL------ -------DAG2    <---------ARR11(3)                <---------YAB1              <---------ZAT18--------   ctttacggtactcttcaatatctaagcttctttgcattgtttgaaatgtgttctgatttctaatgcttagaatttgttagtgcgattcgtgtattgagat  17055400   <---------ARR14(2)   --------->ARR14(2) --------->LBD16 ------->At4g35610 --------LBD16 --------At4g35610 -->ZmHOX2a(2) ==========================HOX2a_HOX2a --ZmHOX2a(2) ---->CCA1(2) ==========================HOX2a_HOX2a ----ARR11(3)             --------->ANAC46 --->ARR11(3)             --------->ANAC58                                        <---------ANAC55(1) --->ARR14(2)             --------->ANAC58                            --------->ZAT2 ----ARR14(2)         --------->CCA1(2)                               <---------At4g35610 --->ARR14(3)        <---------ARR14(2)                       ---------->DOF2     <---------ANAC58 ---GLK1(1)          --------->ARR14(2)                     <---------YAB1        <---------ANAC58 --->AGP1           <------ZmHOX2a(1)                      --------->YAB1         <---------ANAC46 --->ARR10        <---------TOE2(3)                  <-----------GT1  <---------ZAT2         --------   ctgcggatgtgatactctctgaggatacaagacactctgggaagttgctacagtattacaatattaaagctcagcttgtaagttacttgtatatggaaag  17055500  Previous    Next  AGI:  At1g45100.1    Description:  polyadenylate-binding protein, putative / PABP, putative. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G41690.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 17053071    to: 17054629    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g45110.1    Description:  tetrapyrrole methylase family protein. similar to hypothetical protein OsI_032434 [Oryza sativa (indica cultivar-group)] (GB:EAY78475.1); similar to hypothetical protein OsJ_030279 [Oryza sativa (japonica cultivar-group)] (GB:EAZ16070.1); similar to Os10g0414500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064595.1); contains InterPro domain Protein of unknown function UPF0011 (InterPro:IPR008189); contains InterPro domain Tetrapyrrole methylase; (InterPro:IPR000878); contains InterPro domain Tetrapyrrole methylase, subdomain 1; (InterPro:IPR014777) Range:  from: 17054974    to: 17057232    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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