Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->GLK1(1)                                              <--                                  <---------ARR11(3)                                              ---                                  --------->ARR11(3)                                           *TSS<-                              ---------->DOF2                                                ------>ZmHOX2a(1)                        --------->ZAT14                                                     ---------                        <---------ZAT14                                                     ---------        <------NtERF2<---------ANAC58                                                    <-----------GT1 ------->DOF2        <---------ANAC58               <---------ZAT6           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   caaagatggcagagaaacatgggccttgcagtgaaagaactccatacttctatagagtaagagcaatagaaaaacatatgttatcttatattttccttaa  17033300                                                                                      ---------------                                                                                <------------CBF                                                        --------->ARR11(3)     --------->ATHB51                                                        --------->AHL20(1)     -------->HAHB4     --------->AHL20(2)                         ---------->DOF2                <--------ATHB1    <---------AHL20(2)                       ----------->TBP                   <---------ICU4   --------->YAB1                          <----------DOF2                     --------->YAB1 -------AHL20(2)             --------->YAB1<---------------AGL15              <---------ATHB51 ------>AHL20(2)      <---------AHL20(2)   --------------->AGL15              <---------AHL20(2) --------AHL20(2)     --------->AHL20(2)   --------->TOE2(3)  ---------->ID1  --------->ICU4 >TOE1(3)         ----------->GT1       XXXXXXXXXXXXXXXXXXXX>MIR830      --------->TOE2(3)        <-- >TOE2(3)       ---------->DOF2      <-----------GT1    <---------AHL20(1)    <---------YAB1   <-----   ttttatattaattctttgtaaagtttaattttcatatttttactactttaaaaagaaatattttgtttttttaaaacttaataattgttttgtacttgta  17033400                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                             --------                                                                                             --------                                                                                  <---------YAB1 ----                 <---------AHL20(2)                                              <---------AHL20(2) <             <---------RVE1(1)               <---------AHL20(2)                  --------->AHL20(2) -             <---------CCA1(1)              --------->AHL20(2)                <---------AHL20(1) <---            --------->AHL20(1)              <---------AHL20(2)                --------->AHL20(1)-----            <---------AHL20(1)              --------->AHL20(1)                <---------ARR11(3)<----     --------->HSFB2a(2)    --------->DAG2  <---------AHL20(1)                --------->ARR11(3)<----     <---------HSFB2a(2)   ---------->DOF2 --------->YAB1                   <---------AHL20(1)<------ >AtSPL8    <---------ARR11(3)         <---------AHL20(2)                   --------->AHL20(1)<------ -------WOX13(1) --------->AHL20(2)    --------->AHL20(2)    <----------ID1 <---------ARR11(3)------- ----YAB1   --------->ARR11(3) ----------->GT1      <----------DOF2--------->ARR14(2)<---------YAB1<-   attggttttagaaagatatttttttataaaaaagggtatttttaaatataatgtcttttaaaaactacaaatttgcaaaatatttttataaatgaataat  17033500 <---------AHL20(2) ----->YAB1 ---->HAHB4 ------ICU4 ---->ATHB1                                                                                     <---- -----HAHB4                                                                                     ----- ->ICU4                                                                                  --------->ZAT18 ->AHL20(2)                                                                              <---------ZAT18 ----->ATHB51   <---------ICU4                                         <---------AHL20(2)<---------ZAT14 ---------AHL20(2)                                                  --------->AHL20(2)   --------->ZAT14 -------->AHL20(2)        --------->AHL20(2)                      <---------YAB1       <---------ZAT18 ------AHL20(2) --------------->AtSPL8                         --------->ICU4          <---------ZAT14 ---->ICU4  <---------AHL20(1)                                 <---------YAB1          --------->ZAT14 -----YAB1  --------->AHL20(1)                                --------->TOE2(3)        --------->ZAT18 -----ATHB51--------->AHL20(2)                           --------->ZAT18       <---------ARR11(3) ---ICU4    <---------AHL20(2)                         ------->PIF5 <---------AHL20(2)<---------ZAT6 --HAHB4   --------->AHL20(2)   <---------AHL20(2)     <-------PIF5<---------AHL20(2)<---------------AtSPL8 -->YAB1 --------->TOE2(3)<---------AHL20(2)    --------->At4g35610--------->AHL20(2)--------------->AtSPL8 --------YAB1   <---------------AtSPL8     <-----------GT1 ----------->RAV1(1) --------->ARR11(3) ---   tattaatttttcattaaattagtactatttaaaatttatagttttttatcagttgcaagtgcaacattattaatttatagagattttagtgtacacttct  17033600            --------->ATHB12      <---------ATHB12      <-----------GT1                 --------->YAB1    --------->WOX13(1)      --------->ZAT6                  ----------->GT1   <---------AHL20(2)     <-----------GT1              <---------TOE2(3)   --------->AHL20(2) <---------AHL20(2)        <---------AHL20(2)  --------->AHL20(2)<---------RVE1(1)           --------->AHL20(2)                                ---  <---------AHL20(2)<---------CCA1(1)      --------->AHL20(1)        --------->ARR11(3)           --- -----HSFB2a(2)    --------->ARR11(3)      <---------AHL20(1)        <---------ARR11(3)          ---- ---->HSFB2a(2)    <---------ARR11(3)     --------->YAB1 --------->YAB1   --------->ATHB12 ---------- ------>AHL20(2) <---------TOE2(3) --------->YAB1<---------YAB1  ---------->DOF2          <----------ID1   ataaataaatcaattcattgagattttttttcactattcatcaaaaatattaaaattaagaatagtaaaaagctcttcatttgcataagaaaaaaacaaa  17033700                                                                                                 ----                                                 <---------CCA1(2)               <---------ARR11(3)                     *TSS                   <---------ARR14(2)             <---------WRKY18(1)   ----                     ---------->DOF2        --------->ARR14(2)            ----------->HVH21      ----               ---------->DOF2          --------->ZAT2                --------->LBD16            ---- --------------------->ANAC81           <---------At4g35610           ------>NtERF2              ---- ------>MYB52(1) <----------ID1         <---------ZAT2               --------->ANAC46        <------- -------------------->ANAC81            --------->At4g35610         <---------LBD16          ------>ZmHOX2a(1) -------------->ANAC81       <------ZmHOX2a(1) --------->O2       --------->ARR14(2)    <---------At4g35610   aaacagaaaacaaaaaaaaaagacaaagtaaggaggccagacagcagacccgtctctctccgtctccatctccgccatgaccagctcttccgctccttca  17033800                     <---------O2                     <---------TGA1a            <----------DOF2            ===================bZIP_DOF ----->ANAC58        --------->TGA1a ----->ANAC55(1)     ===================================bZIP_DOF ----->ANAC58        --------->O2 <-------TEIL             --------->YAB1                        <--- ----->ANAC55(2)     ===================================bZIP_DOF                                 <--- ----->ANAC46     ----------->HVH21                     <----------DOF2                          <--- ----HVH21----------------------->TaNAC69(2) <----------DOF2 <---------YAB1           <----------DOF2   cgcaaggtcgctctctttctctcacatgtcttcaaattcatgtttctctttacaaaaactttgatgattcaatctgagaaattgtgttctttcattcatg  17033900                  <---------ANAC46                  <---------ANAC58                  <---------ANAC58                  <---------ANAC55(2)                ------>ZmHOX2a(2)                                             <-----------TGA1        --------->ANAC58                                                     <---------ANAC58        --------->ANAC58                                                     <---------ANAC58        --------->ANAC46                  <----------DOF2                 <---------GLK1(1)    <----------DOF2                    <---------ARR11(3)          <---------ALFIN1 ------ANAC58  <------ZmHOX2a(2)       --------->ARR11(3)         --------->MYB46(3)        --------- ------ANAC58 --------->ARR11(3)   ---------->DOF2              --------->ANAC46   ---------->DOF2 ------ANAC46 <---------ARR11(3)<---------HSFB2a(2)         --------->ARR14(2)<-----------HVH21 -----   cgtaggctttaagcaagatcgcgtgtaataggttgcagaaagagctttctgagtggcaattgaatccccccactggatttcgtcacaaagtcactgataa  17034000                                                                                  <---------ANAC46                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                           <---------ARR14(2)                                                                           ------->TEIL   ------>ZmHOX2a(2)                                                                           --------->ARR14(2)                                                                           <---------ARR11(1)                                                                           --------->GLK1(2)                                                                          <---------CCA1(2)                                                                          <---------ARR14(1)                                                                        <---------ANAC58<---------ARR11(3)               <----------DOF2                                          --------->ANAC55(2)            ------->TEIL                                                <---------ANAC55(2)   ---------->DOF2                                            --------->ATHB12<----------DOF2 >YAB1      -------->P       <----------DOF2     <----------DOF2        <---------ANAC58--------->ARR11(3) ---->GLK1(2) --------->TOE2(3)               <-----------GT1<---------YAB1<-----------ARR10   tcttcaaaagtatcaacctttatgtctctgtctttgaaatgagttttttttctttctgtgattttgatttgaatgcgtatctttgtgtgtgatcttaaga  17034100                                                                                                  ---                                                                                                  ---                         ----------->HVH21                                                        ---                       --------->LBD16                                                           ----                      <-----------RAV1(2)                                                       <----                  --------->GLK1(1)                                                          --------                  <---------GLK1(1)                                                          --------                  --------->ZAT2                                                           <---------ALFIN1                  <---------At4g35610                                  --------->LBD16    --------->HSFC1(2)                  --------->At4g35610                                  ------>ZmHOX2a(1)  <---------At4g35610                  <---------ZAT2   --------->ANAC58                  <---------LBD16      --------->At4g35610               --------->LBD16     --------->ANAC46       <---------TOE1(3)               <---------HSFC1(2)             <---------LBD16       --------->ANAC58      <-----------RAV1(2)             --------->ANAC58            --------->MYB52(1) <----------DOF2       <---------At4g35610      <-----------GT1--------           <-----------GT1     <---------DAG2        --------->At4g35610   <---------ICU4--------->ANAC58   tggacaatagatgttaccggagctccagggacactttacgctaatgagacttatcagcttcaggttgaatttcctgaacattaccctatggaagcacccc  17034200  Previous    Next  AGI:  At1g45040.1    Description:  pseudogene, hypothetical protein Range:  from: 17032938    to: 17033295    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g45050.1    Description:  ATUBC2-1 (ARABIDOPSIS THALIANA UBIQUITIN-CONJUGATING ENZYME 15); ubiquitin-protein ligase. Identical to Ubiquitin-conjugating enzyme E2-18 kDa (UBC2-1) [Arabidopsis Thaliana] (GB:P42743;GB:O48952;GB:Q9MAK4); similar to UBC18 (UBIQUITIN-CONJUGATING ENZYME 18), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82081.1); similar to Os03g0681400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050906.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 17033721    to: 17035638    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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