Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------CCA1(1)                                                         <--------                  <---------RVE1(1)  --------->ARR11(3)                    <---------MYB52(1)  <----------DOF2--------->ARR11(3)  <---------AHL20(1)<---------At4g35610 --------->DOF5.7(2) ->LBD16         <---------ARR11(3)  <---------AHL20(2)--------->At4g35610--------->TOE2(3) <-------- --TOE1(2) <-----------GT1<----------DOF2          --------->GLK1(2)  <---------GLK1(1)--------->ANAC55(2)   ttcactttgatttttatcagatatttgtctttgtgctaatatatggtgatgaaattctgctgtttcatatggatttcgttaatgtgttcatgtgattaat  16996000                        <---------TOE2(3)                      ---------->DOF2                   <------MYB46(1)                   <------MYB83                  --------->MYB59              --------->ATHB12                       <---------TOE2(3)             --------->ICU4                        <---------AHL20(2)                              --             <---------YAB1                  --------->At5g28300                                   --           --------->YAB1                   ----------->GT1----------->GT1             <-------------         <---------ARR11(3)                <---------TOE2(3)                     <---------ANAC46<--- -YAB1   --------->ARR11(3)        ------->TEIL   --------->AHL20(2)   <---------ZAT18<---------ARR11(3) -WOX13(1) <-----------------AG <---------YAB1    <---------AHL20(2)  <---------ZAT6 <---------CCA1(2)   acaacaacgaatatcatgatttggtaaaggaaacatgaatgcatcaaggtaaattaatgttttgtaaatttagtgttcttgttccctatatctaatctgg  16996100                                                                         <---------ICU4                                                             --------------->AGL15                                                             <---------------AGL15                                                            --------------->AGL15                                                ------>ZmHOX2a(1)        --------------->AtSPL8                                               --------->TOE2(3)         <---------------AtSPL8                                     <---------AHL20(2)     <---------ANAC46                                    --------->AHL20(1)      <---------ANAC58 ------->ANAC58                     <---------AHL20(2)      ========================================= ------->ANAC58                     --------->AHL20(2)      <---------ANAC58   ----------->RAV1(1) ----AGL1          <---------YAB1   <---------AHL20(1)     <-----------------AGL1 --------->TOE2(3) -----P<---------YAB1           --------->ICU4 --------->ANAC55(2)      --------->ICU4   taagccaatgtgatagtcgttatcagagaatgacataatttaatgtgttccttaatcgtgttccttgtttgggaattagtacaacattaagctacagaga  16996200                                              <---------AHL20(2)                                             --------->AHL20(2)                       <---------TOE2(3)                                             <---------AHL20(2)                       <---------TOE1(3)                                             <---------AHL20(1)                --------->YAB1                                             --------->AHL20(1)          <-----------HVH21                     --------->TOE2(3)  --------->AHL20(2)               <---------MYB52(1)   --------->ICU4   --------->YAB1  <---------RVE1(1) <----------DOF2   --------->LBD16     ---------  --------------->AGL15      ------->TEIL<---------AHL20(2)           <---------LBD16 --------->MYB59 =================MADS_MADS<-------TEIL <---------AHL20(2)  <---------YAB1--------->WRKY18(1)     ---   atgacataatttagtaagagaaacataaatgcatcgaggtattttaatttaatgctctttttcttattctaatccggtcattcatatttaggttactgaa  16996300                                                                          <---------ICU4                                                                        --------->GLK1(2)                                                                        <---------ARR11(3)                                                                    <---------bZIP60(1)                                                                    --------->bZIP60(1)                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          ---------->DOF2     <-------TEIL          xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >ANAC55(2)         ------>ZmHOX2a(1)   --------->DAG2              <---------TGA2(1)               < ------>YAB1       --------->TOE2(3)   ---------->DOF2           ----------->HVH21           <------ZmHOX2a(1)   tcataagaggcacaaagacttccttacttaggctcgttagaaaaagctacttactgtatatatgtaagtgacataatctttaaaaaatatgtagaggaag  16996400                                                        <---------HSFB2a(2)                                                <----------DOF2                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <-----------HVH21        *TSS      --------->HSFB2a(2)                    --------->TGA2(1)        <-----------GT1                    <---------bZIP60(1)   --------->ANAC58                                     <-----                --------->ARR11(3)        <---------ANAC55(2)                    <-----------GT1  <--                <---------GLK1(2)         ----------->GT1             <-----------GT1     <----------DOF2              <---------ATHB12            --------->ANAC58    --------->TOE2(3)<-----------HVH21 <--- ------ZmHOX2a(1)   --------->bZIP60(1)   --------->ANAC55(2)----------->GT1<----------DOF2    ------   aaggatgctatctccaaagattatgtcacttacatatatacagtaagtaactttgcatccagaacgttatattaacaactttgtcacaacttctttataa  16996500                           <------ZmHOX2a(2)               --------->ATHB12                          --------->ARR11(3)        <---------ANAC58                      ---------->DOF2        --------->At4g35610 ------GT1       --------->ALFIN1   <---------YAB1  <---------ANAC58 -------ICU4   --------->ALFIN1   =================================================================== ------YAB1    <---------ANAC46   <---------------AGL15    <---------MYB46(3) --->YAB1 <---------LBD16 <---------ARR11(3) <---------At4g35610         <------ZmHOX2a(1)  <--------   caattgcgattttcagggtgtggagaaagatcaattctattatttgcagctatggcttccatggttgagaaaccaggatgccattgatgcaactatgttt  16996600                <---------DAG2                <----------DOF2             <-----------------AG                                           <---------GLK1(1)           <-----------GT1                                                  --------->GLK1(1)      ----------->GT1                                                      --------->ARR14(2)      <------MYB46(1)                                          <---------YAB1     --------->ATERF1(1)   <---------ANAC58                             --------->ANAC58           <---------ARR14(2)   <---------ANAC58                --------->ZAT6             <---------TOE2(2) <---------ANAC46  --------->ATHB12                 <-----------GT1            <---------TOE1(2)<---------LBD16 ==============================MADS_MADS        --------->ANAC58      <---------WOX13(1)           -- -YAB1<------MYB83      --------->SPL7          --------->ANAC46    --------->ATHB12            -----   gggatgcttggtataacccttttcggttcgaccattttcactaagtgtccaagaaacaacttcttatgtttgattgggatttgcgcaggctcgagctaga  16996700                                                                                          <---------YAB1                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC55(2)                                                                                     <------MYB46(1)                                                                                     <------MYB83                                                                                    --------->MYB59                                                                                    --------->MYB111(1)                                                           ==============================RAV                                                           ------->GAMYB            --------->MYB46(2)                                                           ----------->RAV1(1)  --------->ATHB12                                                          --------->ANAC46     --------->ICU4                               xxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------YAB1------->TEIL                          ------->MYC3               --------->TOE2(3)         ------>ZmHOX2a(1) ------->YAB1             <-------MYC3              --------->REM1(1)        ----------->RAV1(2) ---->YAB1       --------->AtLEC2          <----------DOF2--------->MYB46(3) <-----------------AGL1   atcatgttcacttccttccattcaaccatgtggataagagaactgctttgacttacatcaacgacagtagtaaactttctcctgattaggtgatgaatct  16996800               --------->ARR11(3)        --------->ANAC58        --------->ANAC46        --------->ANAC58                                               ---------->DOF2             --     -------->P<---------ARR11(3)  <----------DOF2                --------->TOE1(3)      --------->ATHB12  --------->TOE1(3)          ------>ZmHOX2a(1)                    --------->TOE2(3)     <---------YAB1  <---------DAG2  <----------DOF2------>ZmHOX2a(1)       --------->ANAC58               <---------ATHB51  --------->TOE2(3)      <-----------GT1                 --------->ANAC58       <---------ZAT18   <--  --------->AtMYB61     <-----------GT1<-----------GT1   --------->ANAC46       --------->ZAT18   ---   tcaaccttaccagcaaatgtctttttttatccttcctctttatactaatttgattttcccagcaatgaccttagaaagaaggtgctctcgattattgaca  16996900  Previous    Next  AGI:  At1g44940.1    Description:  pseudogene, putative H+-ATPase, blastp match of 60% identity and 7.2e-14 P-value to GP|12697488|emb|CAC28220.1||AJ286745 p-type H+-ATPase {Sesbania rostrata} Range:  from: 16996446    to: 16997415    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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