Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->AHL20(2)                        <---------AHL20(2)                       <---------AHL20(2)          <---------YAB1                       <---------AHL20(1)        <---------ICU4                       --------->AHL20(2)        --------->YAB1               xxxxxxxxxxxxxxxxxxxxxxx                   <---------AHL20(2)           --------->ICU4     --------->DAG2                  <---------AHL20(2)          <---------ICU4      ---------->DOF2                ------->TEIL               --------->YAB1 --------->ZAT14     <----------DOF2     --------->ZAT6--------->AHL20(2)     --------->AHL20(2)   --------->AHL20(2)    <---------YAB1--------->AHL20(2)  --------->AHL20(2) ----------->GT1     <---------ANAC58    <--- --->CBF   <-----------GT1    ----------->GT1--------->ICU4    --------->YAB1<---------ANAC58    ----   tttcttatcagtataacgaatttaatttttttatgtaaaaaaaaataaaaattatgacagtgtaataaaaaagtgttttgctttgtggtgactataaata  16987000                                                      <-----------GT1                                                <---------AHL20(2)                                                --------->AHL20(2)                                                <---------AHL20(1)                                             --------->AHL20(1)                          --------->AHL20(2)--------->ATHB51             <---------ANAC58               <---------ICU4                                      <----             <---------ANAC58               --------->AHL20(2)                               <-------          <----------DOF2 <---------AHL20(2)<---------AHL20(2)                               <-------  --------->YAB1         <---------YAB1    --------->ICU4                                    -------- >smallRNA(i2)         --------->YAB1   <---------AHL20(2)     <---------AHL20(2)            -------- ------AHL20(2)       <---------AHL20(2)--------->AHL20(2)   --------->AHL20(2)    --------->AtLEC2<- ----->AHL20(2)       <---------YAB1    --------->AHL20(1)   <---------AHL20(2)<---------AHL20(2) <--   taaataatactcctttcgttttatattataaattgttttgaattaattattttattttacaatataaatttgtttctaaatttttatgcaaactatatat  16987100      --------->AHL20(1)      <---------ARR11(3)      --------->ARR11(3)      <---------AHL20(2)                      <------MYB46(1)      <---------AHL20(1)                      <------MYB83      --------->AHL20(2)                      <---------MYB46(3) --------->AHL20(2)              --------->AHL20(2) <---------AHL20(2)              <---------AHL20(2) -----AHL20(2)                   <---------AHL20(1)                  --------->AHL20(2) --AHL20(1)                  --------->AHL20(2) <---------WOX13(1)   <---------AHL20(2) --ARR11(3)                  <---------AHL20(2) <--------P          --------->AHL20(2) ->AHL20(2)         <---------AHL20(2)      <---------WOX13(1)      <---------AHL20(2) ->AHL20(1)         --------->AHL20(2)    --------->ATHB12     --------->AHL20(2) --------YAB1   --------->AHL20(2)       <---------YAB1      ----------->GT1 -------AHL20(2)<---------AHL20(2)<---------AHL20(2)       ---------->DOF2               <-----------GT1   tattttaatatattctaaatatttatatcatataattttttttatgattggttgattttttaaaagtaaatttttttatctgtgtgttttttaactaaaa  16987200                                       --------->HSFB2a(2)                             <---------AHL20(1)                             --------->AHL20(1)                             <---------AHL20(2)        <---------ZAT6                             --------->AHL20(2)------>ZmHOX2a(2)                <---------AHL20(2)                            --------->AHL20(2)<------ZmHOX2a(2)                 --------->AHL20(2)               ----------->GT1         <---------HSFB2a(2)                  <---------AHL20(1)         <---------YAB1 <---------AHL20(2)   --------->ARR11(3)             --------->AHL20(1)      --------->ICU4   <---------AHL20(1)    --------->ARR14(2)             --------->AHL20(2)  --------->AHL20(2)   --------->AHL20(1)    <---------ARR11(3)       ----------->GT1  <---------AHL20(2)   --------->AHL20(2)    <---------ARR14(2)     <---------ZAT14    <-----------GT1 --------->AHL20(2)    <---------AHL20(2)---------->DOF2<---------ZAT18     <---------AHL20(2)    ---   caatttaaattatgaaacagaaaaataaaattttatttcttcgaaaagatcggaatagtgttcttgtgactgaagtaataaattatatgttacaatttga  16987300                      <---------AHL20(2)                      --------->AHL20(2)                     --------->AHL20(2)                         ------>ZmHOX2a(1)                     <---------AHL20(2)               <---------YAB1 --------->YAB1                  <---------AHL20(1)                 <---------AHL20(2)                  --------->AHL20(1)                 <---------AHL20(1)                  --------->AHL20(2)                 --------->AHL20(1)            <xxxxxxxxxxxxxxxxx          --------->ANAC46                           --------->AHL20(2)        <------NtERF2        --------->ANAC46                            --------->YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ARR14(2)                      --------->ANAC46   ------------>CBF<---------ANAC58  --------->YAB1 --------->AHL20(2)         <---------REM1(2)  --------->TOE2(3)<---------ANAC58 <------ZmHOX2a(2)<---------AHL20(2)   <---------ANAC46   <---------AHL20(2) <---------DEAR3(1) --->ZmHOX2a(2)  <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------O2  <------------CBF   tcgatcatatacacaaaaaataaattaatatgcatactatggagtctacacaaattataatttatcctcaatattcacgttggcgcatcaaattgttgac  16987400                                                                                                 ----           <---------CCA1(1)                                                                <--------           <---------RVE1(1)                                              <----------DOF2   ---------          --------->ARR11(3)                                            ---------->ID1      ---------          <---------AHL20(1)                                           <-----------GT1      <--------          --------->AHL20(1)         ------------>CBF          <---------YAB1        <---------ARR11(3)          <---------ARR11(3)        --------->GLK1(2)        --------->YAB1          --------->ARR11(3)      ---------->DOF2   ------------>CBF  *TSS  --------->MYB46(3)<---------YAB1    --------->YAB1--- xxxxxxsmallRNA(se3)  <-----------GT1<-------TEIL  <---------ATHB12 <---------AHL20(2)     ----------   attttccaaaaagatatttagtatttaccaatttagagattcaattttgaacaatcgttccattgattatttttttcttttttcaaagatagttctaaaa  16987500                                                                         <------MYB46(1)                                                                         <------MYB83                                                                         <---------MYB46(3)                                                                        --------->MYB111(2)                                                                        --------->MYB46(2)                                                                        <---------MYB46(3)                                                                        --------->MYB55(2)                                                             --------->At5g28300                                               <-----------RAV1(1)      <---------AtMYB61                                             <---------DOF5.7(2)        <---------DEAR3(1)        <---------AHL20(2)                 --------->DOF5.7(2)         <---------MYB52(1)        --------->AHL20(2)       <---------ARR14(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(1)       --------->ARR14(2)      ------------>MYB.PH3(1) ------>DOF2                     --------->ARR11(3)  <---------PCF2    <--------P                  -- -HSFB2a(2)       <---------AHL20(2)      --------->TOE2(3) ----------->GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ------>AGL15     <---------AHL20(1)      --------->TOE1(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxx >HSFB2a(2)       --------->AHL20(2)    <---------TOE2(3)--------->MYB52(1)----------->HVH21  xxxxxxx -------AGL15--------->AHL20(2)  <---------GLK1(2)  <------NtERF2      <---------MYB55(1)   --------- ------>DAG2 <---------AHL20(2)  <---------ARR11(3)<---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->AGL3<---------AHL20(1)----------->ARR10  --------->ALFIN1   <---------MYB46(3)     ---------   aaagttttattttattttattttattttttgttcagattttcaacgttaatggtggggcaaacggttatatcggttggtgacggtcttgtttctctgacg  16987600                  --------->LBD16                          <---------ANAC55(2)            <---------MYB46(3)                             --------->ANAC58            ==============           <--------P                                      --------->ANAC46            ---------->DOF2          <-------GAMYB                             ------>NtERF2                <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------DEAR3(1)                       ------>NtERF2                   <---------ATHB12       <-------TEIL                             --------->LBD16 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58 --------->SPL7       ----    <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  ------->TEIL<---------SPL7         ====    <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->YAB1     ------>NtERF2         <---------ZAT18<---------DAG2--------->HSFB2a(2)       ------ xxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------AtMYB61  <----------DOF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------HSFB2a(2)   xxxxxxxxxx -->HVH21<---------MYB46(3)  <---------ANAC58  <---------HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->TGA1<---------RAP2.6(2)  <---------ANAC58  --------->HSFB2a(2)------>ZmHOX2a(1)   <---------AHL20(2)   ataatgaggtgcggttgttccgccttctaatgcgagttgtggtgaacttcccgacgactttacgcatccttctagtcgtaccactgatttaaagacacca  16987700                                                        <---------ANAC46                                                       <------NtERF2                                                       <---------LBD16                                                       --------->At4g35610                                                       --------->RAP2.3(1)                                                      ------>NtERF2                                                      <---------ATERF1(1)                                                      <---------RAP2.6(1)                                                      <---------ERF1                                                      <---------ORA47(2)                                                      <---------RAP2.3(1)                                                      <---------RRTF1(1)                                                     --------->ATERF1(2)                                                     <---------ATERF1(2)                                                     <---------RRTF1(3)                                                     <---------ANAC46                                                     <---------DEAR3(1)                                                     <---------RAP2.6(2)                                                     <---------RRTF1(2)                                                     <---------DREB2C(2)           <-------TEIL                           =======================MYC_MYB                         xxxxxxxxxxxxxxxxxxx                           ===================================MYC_MYB      xxxxxxxxxxxxxxxx>smallRNA(i)                           =======================MYC_MYB                  <------MYB46(1)                           <---------TGA1a           <---------RAP2.3(3)   <---------MYB46(3)                           <---------O2              <---------RAP2.3(2)   <------MYB83                           --------->O2           ------->GAMYB            --------->MYB52(2)                           ================================================bZIP_DOF<---------ZAT14                           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------At4g35610<---------AtMYB61                      <---------At4g35610         <-----------RAV1(1)     <---------DEAR3(1)                      --------->At4g35610        <------------AtMYB77     --------->MYB111(2)                      --------->ZAT2      --------->At4g35610             --------->ALFIN1                      <---------ZAT2     --------->ALFIN1 <------NtERF2   <---------MYB46(3)                  <-----------HVH21      <-----------RAV1(1)              --------->MYB55(2)        =============================bZIP_DOF   --------->At4g35610      <---------MYB55(1)        ---------->DOF2 <---------ZAT18  <---------MYB46(3)              <--------P--------->ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ANAC46 ====================================bZIP_DOF   --------->ZAT2  ---------->DOF2<------NtERF2 ------>DOF2---------->DOF2--------->TGA1a<-------GAMYB--------->ATERF1(1)--------->MYB46(2) ====================================bZIP_DOF   <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)  <xxx --->AtMYB61=========================bZIP_DOF xxxxxxxxxxxxxxxx>smallRNA(i)--------->MYB111(1)   <xxxx xxxxxxxxxxxxx>smallRNA(si3)    --------->ETT(1)<xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aaagagggactaaagaaagttgtcagctcacttgtcggaagggctgttgcaactggcggcggaagtcaaagacgggttggtggggttcactacgagtcga  16987800                           ==============================MYC_MYB                           ===============================MYC_MYB                           <---------O2                           --------->ZAT2                           <---------TGA1a                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       ------>ZmHOX2a(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <------ZmHOX2a(2)                      <---------At4g35610                      --------->At4g35610        <-------GAMYB                     <---------AGP1     --------->At4g35610                     --------->ARR14(2) --------->ZAT14                     <---------ARR14(2) <---------ZAT14                          --------->ATHB12                     <-----------ARR10  <---------At4g35610                      -------->ATHB1                    <---------CCA1(2)   --------->ZAT18                          <---------ICU4                  xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------AHL20(2)     --------->YAB1                  --------->ETT(1)     --------->ALFIN1   --------->AHL20(2)    --------->ICU4     --             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------MYB46(3)              <---------YAB1-------            --------->ARR14(2) <------NtERF2 ------------>AtMYB77               <---------ATHB12 <xxx            <---------GLK1(2)--------->ALFIN1------------>MYB.PH3(1)          --------->YAB1 <-------            <---------ARR14(2)<---------MYB46(3)<---------DEAR3(2)           ------------>ATHB5  <---       <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ALFIN1 <------ZmHOX2a(1) ------->GAMYB     <---------ANAC58 x>smallRNA(fl3)<-----------HVH21  <------MYB83<---------DEAR3(1)      --------->MYB46(3) <---------ANAC46 xxxxxxxxxxxxxsmallRNA(i)  <---------bZIP60(2) <---------ANAC46     <---------WRKY38(1)   <---------ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <------MYB46(1)<---------MYB52(1)<---------WRKY12    xxxxxxxxxxxxx   gacgattagcgccagatttgtcggatctgaggtggctaggtgtgcagaggcggttaggattttatttgagtcaaccgctctaatcattgttttcgtgtga  16987900  Previous    Next  AGI:  At1g44935.1    Description:  transposable element gene Range:  from: 16987442    to: 16988292    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version