Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            -----------                                                                                     --------->YAB1                                                                                    =================                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR14(2)                                                                               <---------LBD16   ----                       ------->GAMYB                                        ---------->DOF2     =====                    --------->MYB52(1)                                    --------->TOE2(3) ---------                <---------TOE2(3)                                      ----------->RAV1(1)--------->At4g35610      --------->HSFC1(2)                  <-----------GT1       --------->ANAC58   --------->ARR14(2)      <---------HSFC1(2)                 --------->AHL20(2)     --------->ANAC46  <---------ARR14(1) ----------HVH21<---------TOE1(3)     --------->WOX13(1)        --------->ANAC58 --------->LBD16<---- -----AtLEC2  --------->STY1(1) --------->HSFB2a(2) --------->ANAC46   ==============================   atgtcagaaacatcccctaaggtaacagtcttgtctggaccaattaactcgtcccagtaactcttcatgccatcaacataaaccggatcatcatctggat  16962100                                        --------->ANAC46                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                    --------->ANAC58                                    --------->ANAC55(1)                                    <---------ANAC55(2)                                    --------->ANAC58                                    <---------ETT(2)                                    --------->ANAC55(2)                          <---------ARR14(2)                                    --------->ANAC46                             --------->ARR14(2)                                <-----------HVH21                         --------->MYB46(3)   ------    --------->TOE2(3)      --------->ANAC58                     <---------LBD16 ------>MYB46(1)------ xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC58    <-----------ARR10   ------>MYB83 <------- >RAV1(2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------RAV1(2)     --------->ETT(2) ===========HOX2a_HOX2a    <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ARR14(2)<---------MYB111(1)  <- ----->YAB1                --------->ANAC58       --------->ANAC55(2)   <---------ARR14(2)   -------- ===========HOX2a_HOX2a   --------->GLK1(1)      <---------TOE2(3)      --------->ARR14(2) --------->ANAC46 >HSFB2a(2)               --------->WOX13(1)    <-----------RAV1(2)    <---------GLK1(1)<---------ZAT14 --ZmHOX2a(2)     <---------ALFIN1  --------->AtLEC2   --------->AtLEC2--------->GLK1(1)--------->ZAT14 =RAV------>ZmHOX2a(1)  <---------ZAT18 --------->ANAC58   <---------CCA1(2) --------->ANAC46<-------   cataatcctcagaaaactccccacagggcaatccagtcacgcaagcaaattcaggtaatgcaaatctcagggggtatccaccaaatactgtccacagctc  16962200                                                                             --------->At4g35610                        <-------TEIL                                    --------->ANAC46                     <---------ANAC58                                   ------->GAMYB <---------DAG2      <---------ANAC46                                   <---------ATERF1(2) <----------DOF2     <---------ANAC58                                  --------->MYB46(3) --------->AtSPL8   <-----------------------TaNAC69(2)                 --------->DEAR3(2) --------->AtSPL3   <-------TEIL                            <---------ZAT18  <---------At4g35610 --At4g35610     <---------At4g35610          <----------DOF2         -------->P --------TOE1(2) --------->ZAT2  --------->ANAC58 --------->HSFB2a(2) --------->MYB52(1)       ------ ->ZAT2          --------->At4g35610   --------->YAB1     <---------ZAT18  <-----------RAV1(2) ------ --ZAT2          <---------ZAT2  --------->ANAC58 <---------HSFB2a(2)--------->MYB52(1)      --------   gtactttttcttcgttaccagctgcgtacatagcaacgcatgcataagctttccagacatcgcacacttactaaccggcagatggaatagaggtccaaag  16962300                                             <---------ANAC46 <-----------ARR10                                             <---------HSFB2a(2)                                             --------->HSFB2a(2)                                            <---------LBD16   --------->GLK1(2)                                           ------>MYB46(1)    <---------ARR14(2)                                           --------->MYB52(1) --------->ARR11(3)                                        <---------HSFB2a(1)   --------->ARR14(2)                                 --------->LBD16              <---------ARR11(3)    <-----------GT1                                --------->LBD16       <------ZmHOX2a(1)            <-----------GT1                               <---------LBD16--------->LBD16<---------GLK1(1) <---------AHL20(2)   ----------->GT1          ---------->ID1 ------>MYB83      --------->RVE1(1)--------->ARR11(3) --->ANAC58             <----------DOF2 --------->HSFB2a(1)<---------GLK1(2)  <---------AHL20(1)  --- --->ANAC58  <---------GLK1(1) --------->At4g35610  <---------TOE2(3)         <---------ARR11(3)  <-- -->DOF2     --------->GLK1(1) ----------->RAV1(2)---------->DOF2        <---------ANAC46         ---   caagattgtagaatgaaatccaattcctttgtcccctgaaaaaccttccggataaaggatagaatatctggtcttgagtatatatttagccttcccctcg  16962400               ---------->DOF2            <---------ANAC46                                        <---------WRKY18(1)           <------NtERF2                                           --------->WRKY12          ------>NtERF2                                            --------->WRKY38(1)         --------->ALFIN1       --------->CCA1(2)          --------->LBD16         <---------DEAR3(1)    <---------ARR14(2)          ------>ZmHOX2a(1)      <---------DEAR3(1)       --------->ARR14(2)         --------->TOE1(2)      ============================HOX2a_HOX2a        --------->HSFC1(2)             --------->ANAC58      ------>ZmHOX2a(2)        <---------ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ATHB12            --------->ARR11(3)    <---------HSFC1(2)             --------->ANAC58 ------>ARR14(2)             ----------->ARR10       --------->HSFB2a(1)          *TSS            <-- -------ARR14(2)           <------ZmHOX2a(1)         <---------MYB46(3)       --------->ICU4    ----- ------>ARR11(3)--------->DAG2<---------HSFB2a(1)    <---------HSFB2a(1)  <-----------HVH21     <----   gatattgatcggtggcgaaaagtctattaggaagatttgaatcacactgagaagatggttcctgagaggttgaccctgtcattagcaagaaacaagtttc  16962500                                                                                                  <--                                                                                                  ---                                                                                                  ---         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <---------ANAC58       <-------      <---------TOE2(3)                                               <---------ANAC46       --------      <---------YAB1                                                  <---------ANAC58       <-------      <---------TOE1(3)                       <---------ZAT18     <---------ANAC46      <---------ZAT6 -------At4g35610                ------>MYB46(1)                  <---------ANAC58  <---------At5g28300 ---->HSFB2a(2)                  ------>MYB83 --------->ZAT18     <---------ANAC58 --------->MYB52(1) -----HSFB2a(2) --------->MYB52(1)            <---------ZAT14 <------------CBF     <-----------GT1<--   agaagattaagattagattaacagataatatgaccaaatgaaaacgagttcacaaacgtctgtctattgcttgcttagattagattaacagtgtaagagt  16962600        <---------ZAT6 ------>MYB46(1) ------>MYB83                                                                      ----------->GT1 -------HSFB2a(1)                                                               --------->MYB52(1) ------>HSFB2a(1)                                                           --------->ZAT6 ------>HSFC1(2)                                                       ------>ZmHOX2a(1) --------AtSPL3                                                    --------->ARR14(2) ------->AtSPL8                                                    <---------ARR14(2)               - --------AtSPL8                                                ----------------->AGL1               < -------HSFC1(2)          ---------->ARF1             <-----------GT1  ----------->GT1              -   accttccatagtgtaacagaataaacttgtctgccaatgctatcgatttagatgttatactgtcttccaaatcctgtaacacaaacagataaactcatct  16962700                                                               <-----------GT1                --------->CCA1(2)  <-----------GT1  <---------AHL20(2)               --------->ARR11(3) <---------YAB1  <---------AHL20(2)        --------->At4g35610     --------->YAB1    <---------YAB1        <------NtERF2          --------->ICU4   <---------RVE1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------CCA1(1)         <---------ARR11(3) --------->CCA1(2)        ----------->GT1      --------->ARR11(3)         --------->ARR14(2)       -- -------->ARR11(1)      --------->DAG2         <---------ARR11(3)         --------->GLK1(2)  -------- ---------ARR14(2)     ---------->DOF2         <---------ARR14(2)  --------->ANAC58          <------- -------->ARR11(3)   <------ZmHOX2a(1)         --------->ARR14(2)  --------->ANAC58      <-----------GT1   tagatatggcagcaatagatataggaaaaggaaattataactatatgcagatattattttgttttaaacaagtcaaaatctgaagtatatttttcatctc  16962800                                                                                   <---------REM1(1)                                                                                 <---------ANAC46                                                                                 <---------ANAC55(1)                                                                                 <------MYB46(1)                                                                                 <------MYB83                                                                                --------->MYB111(1)                                              <---------ZAT18         --------->ZAT2  <-----------GT1 ---------->DOF2                              --------->ZAT18         <---------At4g35610    -------- ------->ANAC46                               <---------ZAT14        ----------->RAV1(1)--------->MYB46(3) ->At4g35610            ------->TEIL--------->MYB52(1)      --------->ZAT18     --------->MYB59 --At4g35610        ------------------------>ANAC81    ---------->DOF2--------->At4g35610    <-------   cacaaaagaaaatcaagttgcaaatgaaactgacaaaaaaacagagagtgaacaaaacaaagttcacaaaccagcagaagattaggtgtaaccactaaac  16962900                                                                            ---------->DOF2                                                                          >>>>>>>>>MYB98                   --------->ICU4                                        --------->MYB52(1)         <---------AHL20(2)      <------ZmHOX2a(2)   ---------->DOF2     ------>MYB46(1)      --------->YAB1             ========================HOX2a_HOX2a     ------>MYB83 --------->At4g35610           <------ZmHOX2a(1)  <------ZmHOX2a(1)    <---------MYB46(2)      <----- <---------At4g35610--------->ATHB12           <-----------RAV1(2)     <---------MYB111(1)  XXXXXXXXX ->ZAT14 --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------MYB59     ---------- --ZAT14 --------->AHL20(2)---------->DOF2  <---------ARR14(2)       ------->TEIL        <---------ZAT6   tacagctaaaataaaatagaactgattagaaaaggatcactctgaagaaccaggagaaagacaactctaagaacctaacaaagcctagttagtgaaagaa  16963000  Previous    Next  AGI:  At1g44880.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G10350.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1); similar to Ulp1 protease family [Arabidopsis thaliana] (TAIR:AT3G42530.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 16956826    to: 16962482    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version