Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------AHL20(2)         <---------AHL20(1)        --------->YAB1      --------->AHL20(2)                                                                           <-      <---------AHL20(1)                                                             <---------AHL20(2)      --------->AHL20(1)    <---------AHL20(2)                                 <---------YAB1      <-     --------->YAB1       <---------ANAC55(2)                                --------->YAB1--------->ANAC58 ---CCA1(1)               --------->ANAC55(2)                          <-------TEIL  --------->AHL20(1) ---RVE1(1)      <-----------GT1                                  <---------AHL20(2) --------->AHL20(2) --ARR11(3)<---------AHL20(1)                <-----------GT1      --------->AHL20(2)--------->AHL20(2) ->ARR11(3)--------->AHL20(1)  <---------WOX13(1)            <---------YAB1 <---------YAB1 --------->ANAC58   ttttcaaatataatattttttacaaaatatgtaattgatgtgaattttttcaatataggtgttcttatttatatacatattataaaaaaaattaagccat  16873700                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                        ------->TEIL                                                                       <---------CCA1(2)                                                                   --------->O2                                                                   <---------ANAC46                                                                   <---------ANAC58                                                                   <---------TGA1a                                                                   <---------ANAC58                                                                   <---------O2                                                                   ==================================                                                             <----------DOF2           <---------ARR11(3)            ====================================bZIP_DOF           --------->ARR11(3) <---------MYB52(1) --------->YAB1    --------->TGA1a --------ANAC58     ------->TEIL         <----------DOF2     ================bZIP_DOF --------ANAC58    <-----------GT1     ------->TEIL         <---------DAG2                  <--------   ttcgtttttgtaatatctaatgtaccagttccattagtatgtactttgctagtataacatacccttttgacgtgaatcttctatgagtatgtttctttag  16873800                                                                                      <---------YAB1                                                                                      <---------AHL20(2)                                                                                     <---------AHL20(2)                                                                              <---------AHL20(2)                                                                           <---------AHL20(1)      -- <-----------GT1                --------->AHL20(2)                         --------->AHL20(1)    ---- ==bZIP_DOF                  <---------ANAC55(2)                   ---------->DOF2 <---------AHL20(2) --DOF2               --------->TOE2(3)                 <---------YAB1     --------->AHL20(2)   <----   ttttgaccagacacaattcatttacatcaatacataaattggattttagttccaaaatatgattttcttgaaagaaatattttatatttttattagaagg  16873900                                                       <-----------GT1                   ------->TEIL                                                      <---------ZAT14              --------->DAG2<--- ------->ICU4          <----------DOF2       ---------->ID1                       ---------->DOF2---- ------->GT1 <---------YAB1           <---------AHL20(2)              --------->YAB1    <---------CCA1(2) --ZmHOX2a(1)--------->ICU4           --------->AHL20(2)<---------At5g28300 <----------DOF2      ----   agttattagttcgtcataaatggttctttgaatatgacatttattttgtttttttgtttactgtctaaataagtataacttttaaaaagtgtatctaaat  16874000                                                                                                   --                                                                                               ------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             <-------            <---------AHL20(1)                              <---------ALFIN1                 <-------            <---------AHL20(2)                             --------->ANAC46                  <-------            --------->AHL20(1)                          <---------ZAT14                      ========           --------->AHL20(2)                           <---------ZAT18                      ========           --------->YAB1                               --------->ZAT14             <------------CBF          <---------YAB1 <---------AHL20(2)  <---------MYB52(1)                  ------------>CBF  -- ------AHL20(2)         --------->AHL20(2)  --------->TOE2(3)                   <------ZmHOX2a(1) --- ----->AHL20(1)    <---------WOX13(1)       --------->TOE1(3)               ---------->DOF2  <------- ----->AHL20(2) <---------YAB1<-----------GT1--------->DOF5.7(2)            =========================   tttttaaaaactattatattgatagatttatttttctccacaaaaacgttatctccagttcaccacatagagagtatggaaaggacaattgggagacgtg  16874100    <----------DOF2    <---------DAG2  ------->TEIL <---------ALFIN1 ------->ANAC58 --->ALFIN1 ->TGA1a ->O2 --bZIP60(2) --TGA1a --ANAC58 --O2 ---------->DOF2               *TSS                                  <---------ZAT14 --ANAC58                          <----------DOF2               --------->ANAC46 ==============bZIP_DOF         <---------ARR11(3)           ----------->RAV1(1)    ------>ZmHOX2a(1) ==============bZIP_DOF <-----------GT1                     --------->ANAC46      ------>ZmHOX2a(2) ------->ANAC58       <---------GLK1(1)                 ----------->RAV1(1)       =================== ------>PCF2          --------->GLK1(1)<-----------GT1 --------->ANAC46   --------->ZAT14          -- --ANAC46     <---------ATHB12  --------->ARR11(3)   --------->HSFB2a(2)--------->ANAC46       ------ ==bZIP_DOF   ------------>CBF <---------CCA1(2)     <---------HSFB2a(2)--------->bZIP60(2)   -------   gacgcactttaagcccatcaatagatttcccttatatcttttaatctcttcacttccacaacacaacacaaaacacatcactgatccttctctcatcctc  16874200                                            <------NtERF2                                           --------->LBD16                                           ------>NtERF2                                           --------->ORA47(1)                                          --------->ATERF1(2)                                          <---------ATERF1(2)                                          --------->DEAR3(1)                                          --------->RAP2.6(2)                                         --------->DEAR4(2)                                         --------->ORA47(2)                                         --------->ATERF1(1)                                        <---------ATERF1(1)                                       --------->DEAR3(1)                                      --------->DEAR3(2)                                      --------->ATERF1(1)                                      --------->MYB46(3)                                     <---------At5g28300                                     <---------ATERF1(1)                                    <---------ALFIN1                                   <------NtERF2                                   --------->ATERF1(1)                                   ----------->HVH21                                  <-----------TGA1                                  <-----------HVH21                                  <---------ATERF1(1)                                   <-----------GT1                                 <---------ANAC58                                 ---------->DOF2 =HOX2a_HOX2a                    <---------ANAC58                             --------->At4g35610 -------->DOF2               <-----------RAV1(2)                     <----------DOF2   --------->ZAT18 >ZmHOX2a(1)         <---------At4g35610------>NtERF2  <---------TOE2(3)      <---------At4g35610 -->TOE2(3)          --------->At4g35610--------->ABI4(1)<------ZmHOX2a(1)  ---------->CDC5  <-------   agaaagaatggctcaaaccatgctgcttacttcaggcgtcaccgccggccattttttgaggaacaagagccctttggctcagcccaaagttcaccatctc  16874300                                           --------->YAB1                     --------->ZAT18       --------->ATHB12                                 ---------                  <---------MYB52(1)       -------->ATHB1                                ------>ZmHOX2a(1)                 --------->LBD16           <---------ICU4                           <---------At4g35610     <---------HSFB2a(2)                  <---------ATHB12                          --------->At4g35610     --------->HSFB2a(2)                --------->WOX13(1)                       <---------At4g35610    <---------LBD16<--------P      <------ZmHOX2a(1)                             <---------ZAT2 ------>ZmHOX2a(1)<-------GAMYB --------->HSFB2a(2)                           ---------->DOF2 --CCA1(2)     <---------LBD16  <---------HSFB2a(2)  ------>ZmHOX2a(1)       --------->AtMYB61<------   ttcctctctggaaactctccggttgcactaccatctaggagacaatcattcgttcctctcgctctcttcaaacccaaaaccaaagctgctcctaaaaagg  16874400                                       <---------ANAC46                         --------->ANAC58                         --------->ANAC58                  --------->PCF2       <---------ANAC58      --------->ARR11(3)                  ---------->ARF1      <---------ANAC58      <---------GLK1(2)                  ---------->ID1   <---------ANAC46          <---------ARR11(3)              <---------ANAC58     <---------ANAC58        <---------TOE2(3)                xxxxxxxxx              <---------ANAC58<---------HSFB2a(1)          <---------YAB1     <---------TOE1(3) <-----------GT1 <-----------HVH21 <---------ANAC58        ----------->ARR10  --------->MYB59-------- ->DOF2   <----------DOF2--------->ANAC46                  <---------TOE1(3)  <---------TOE2(3) ---TOE2(3) <-----------GT1   --------->HSFB2a(1)     <---------ZAT6   <-------TEIL    --------->GLK1(2)   ttttcacatactctttacttgtcccacaaggaacatttcttgtgtgtttgatggtaatgttaagattttcatatacattttaggttgagaagccgaagag  16874500                                                                        --------->ALFIN1                                                                        <-----------RAV1(1)                                                                      <---------ANAC58                                                                   <------MYB46(1)                  <                                     <------MYB46(1)               <---------MYB46(3)        <-------                                     <------MYB83                  <------MYB83 <---------YAB1-------       <------ZmHOX2a(1)   --------->MYB55(2) ---------->DOF2     <---------AtMYB61    --------->ARR14(2)     <---------TOE2(3)     <---------MYB46(3)---------->DOF2     <---------MYB52(1) ------>ZmHOX2a(2) xxxxxxxxxxxxxxx>smallRNA(si3)      <---------AtMYB61<---------KAN4(2)<---------ANAC58 <---------ARR14(2) -->DOF2                xxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------MYB46(3)--------->ATHB12   -   caaggttgaggatggcatctttggaacgtctggtgggattggtttcacaaaggcgaatgagctattcgttggtcgtgttgctatgatcggtttcgctgta  16874600  Previous    Next  AGI:  At1g44575.1    Description:  NPQ4 (NONPHOTOCHEMICAL QUENCHING). Identical to Photosystem II 22 kDa protein, chloroplast precursor (PSBS) [Arabidopsis Thaliana] (GB:Q9XF91;GB:Q9ST34); similar to putative photosystem II protein [Gossypium hirsutum] (GB:ABO41853.1); similar to putative photosystem II protein [Gossypium raimondii] (GB:ABO41835.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 16874136    to: 16875823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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