Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC58                                <---------ICU4                       <---------ALFIN1                                --------->YAB1                   --------->ANAC58                                  --------->ANAC58                   --------->ANAC46            <---------ALFIN1      --------->ANAC58                   --------->ANAC58          ----------->RAV1(1)     --------->ANAC46    <---------HSFB2a(2)--------->ANAC58  <---------ARR14(2)         --------->YAB1 ---->YAB1    <---------At4g35610        --------->ARR14(2) <---------ARR11(3) ---ANAC55(2) --------->At4g35610      <---------MYB46(3)   --------->ARR11(3)                      -   atcactctcgaaacatagctcacgcacacatcgttcaatagcggttccaacacatacttcaatatctctataagcatcactcttttgactaattagtttt  16648800                     ------>NtERF2                    <---------ARR14(2)                    --------->ARR14(2)                  --------->LBD16              <<<<<<<ZML2              <---------ARR14(2)              --------->ARR14(2)                                               <---------AHL20(2)           <---------HSFB2a(2)            ----------->GT1                     <---------AHL20(2)           --------->HSFB2a(2)            <---------ANAC46                    --------->AHL20(2)           --------->HSFC1(1)           <---------ANAC46                      <---------AHL20(1)           <---------HSFC1(1)         --------->YAB1                      --------->AHL20(2)       <----------DOF2               <---------ATHB12          <---------AHL20(2) -------->ANAC46<---------LBD16      --------->ICU4     <----------DOF2   <---------AHL20(2)        <   atactcaaactttctagaaccggagcctgtgtaatggcaatgatgtgtgaataaacagctttgattttttttttttttaattttttttttttcatcaaac  16648900                                          <---------MYB52(1)                                         --------->LBD16--------->ATHB51                                        <---------DEAR3(1)                                        <---------DREB2C(2)                                        --------->ATERF1(2)                                  <---------HSFB2a(1)   <------------ATHB5                                  <---------HSFC1(2)    <--------ATHB1                            ---------->DOF2             --------->ATHB12                         --------->At4g35610            <---------ICU4                         <---------At4g35610--------->ATHB12      --------->ANAC58                        ----------->RAV1(1) <---------MYB46(3)    --------->ANAC58                   ---------->DOF2--------->HSFC1(2)   <---------YAB1                  <---------AHL20(2)    <---------ATERF1(2)  <----------ID1                     -----           <---------ARR11(3)    ------->TEIL    --------->At4g35610                            ----- ----------DOF2   <---------ATHB51--------->HSFB2a(1)  --------->ICU4       --------->At4g35610 -----   agctttgattcaacatctaaataatgcagcaaaagaaccttgccggtgattagcagaataattgggccaaggcccattagcagagcaaaatcaactagac  16649000                    <---------TGA1a                    --------->O2                    <---------O2                    ===============================MYC_MYB                    --------->TGA1a                   <------NtERF2                  ------>NtERF2                  <---------ATERF1(1)          --------->GLK1(2)                                                  <---------SPL7          --------->ARR14(2)                    --------->MYB52(1)          --------->ALFIN1          <---------ARR14(2)                 <------ZmHOX2a(2)             --------------->AtSPL8   -          ------>MYB46(1)                  ------->GAMYB                   <---------------AtSPL3   -          ------>MYB83                   <---------TOE1(3)                 <---------------AtSPL8  --         --------->WOX13(1) --------->AHL20(2)--------->MYB46(3)   ---------->DOF2            -------  <-------TEIL    <---------DDF1         <---------TOE2(3)    --------->MYB52(1) ----------->GT1   -- ---->ANAC46     ----------->HVH21      <-----------GT1     --------->MYB46(3) --------->SPL7<------- ---->ANAC58     --------->DEAR3(1) --------->TOE2(3)   <---------YAB1    <------MYB46(1)   --------- ---->ANAC58    --------->DEAR3(2) ----------->GT1   <---------MYB52(1)   <------MYB83     <---------ANAC55(2)   gaaatgcataccaatctggccgacgtcgaataaaaaaacgtttaacgatccaacggttatgaacaaacagaaaggaaggtgtacgataaaactccgtaag  16649100              <---------ANAC58              <---------ANAC58           --------->ARR11(1)           --------->ARR14(2)          --------->HSFC1(2)          <---------HSFC1(2)   --------->TOE2(3)   ------->GAMYB                         ---------->DOF2  --------->MYB46(3)            <---------DEAR3(2) -------->P<---------ARR14(2)   <------MYB83 ------>MYB46(1)                ----------->GT1 ------>MYB83<-------TEIL       <------MYB46(1) -------->MYB55(1)       <-----------HVH21 -------->MYB52(1)    <------------CBF  <---------AHL20(2) ------->AtMYB61---------->ID1 <---------MYB46(3) -->SPL7  --------->HSFB2a(1)  <---------DEAR3(1)                                                 <-- ------->MYB46(3)  ------------>CBF     --------->AHL20(2)---------->DOF2                         <-- --MYB52(1)<---------GLK1(2)   <---------DREB2C(2)--------->At4g35610   *TSS               --------->GLK1(1) >LBD16   <---------HSFB2a(1) <---------------------WRI1--------->MYB46(3)                 <---------   accaaccgtagaagattcgtccccaattgtcagtcggtgaaattaaagaggcatcttaaccaaagaagtctctcttacgagttttctcttcggctttcca  16649200                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              <---------AGP1                              --------->ARR11(3)                              --------->ARR14(2)                                         <---------TOE2(3)           <---------ANAC58   <---------ARR14(2)                                         <---------TOE1(3)     ------>ZmHOX2a(1)        <---------ARR11(3)                                        <---------DOF5.7(2)     ==================================HOX2a_HOX2a                                  <---------TOE2(3)     =================================HOX2a_HOX2a    ---------->DOF2            <----------DOF2 --------DOF2           --------->HSFB2a(2)      <---------TOE2(3)              ------>ZmHOX2a(1)---- -------DAG2            <---------HSFB2a(2)  <----------DOF2                 <------ZmHOX2a(2)  <---- -DOF2     <---------ANAC58  <---------CCA1(2)   <---------TOE1(3)   --------->AHL20(2) ---------->DOF2   ctttttcctctgttcgtgtcattcttctcgtagatctcgagagagagccttaaggtaaagagaaacttaaaaaaaatcgatcctttaagttaaagtttgt  16649300                                                          <------MYB83                                                          <------MYB46(1)                                                     --------->DAG2                                                     <---------TOE2(3)                          -----                                                   ---------->DOF2                              <----                                               --------->AHL20(2)                <-----------TGA1                                               <---------AHL20(2)   =========================HOX2a_HOX2a                        ----------->GT1   <------ZmHOX2a(1)     <---------YAB1   <-----------HVH21 <- --->TEIL        <---------ETT(1)         =================================HOX2a_HOX2a    -------->P -----CCA1(2)    ----------->HVH21     <---------LBD16  <--------P  ------>ZmHOX2a(2) <------ZmHOX2a(1)   atctttcgattgttttgttccgacccttgtaaaatttgttctcaggaaattaaaaaaggttggattttgatcgatgggttcttcgtcaggacaacccgaa  16649400                                   <-----------RAV1(1)                                --------->GLK1(2)             <---------TOE2(3)  <---------ARR14(2)     <---------ANAC46           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ANAC55(2)       <---------ARR14(2)     <---------ANAC55(2)       --------->ARR14(2)     <---------ANAC58          <---------GLK1(2)                                           <---------     <---------ANAC55(1)      --------->GLK1(1)                                           ------>ZmHOX2a(2)     <---------ANAC58     ------>ZmHOX2a(2)                                             --------->ARR11(3) ---->ARR14(2)         --------->ATHB12     ---------->DOF2                             <---------ARR11(3) -----ARR14(2)    <---------AHL20(2)  --------->ALFIN1                              --------->YAB1  < --------YAB1<---------TOE1(3)--------->HSFB2a(1)      <----------DOF2           <----------DOF2    -   tttgattacttgtttaaggttttattgatcggagattctggtgttggaaagagctctcttttgttgagtttcacatctaatacctttgatgatctttctc  16649500                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                            <---------ARR14(2)                                            --------->ARR14(2)                     <---------MYB52(1)                                            <---------ARR11(3)                  ------>ZmHOX2a(2)     <------MYB46(1)                <---------------AtSPL8                    <---------ARR14(2)     <------MYB83                  ---------->DOF2                            <---------AGP1    <---------MYB46(3)<---------WOX13(1)    <-----------ARR10                 --------->ARR14(2) --------->ATHB12   --------->ATHB12<---------------AtSPL3                   <---------CCA1(2) -DOF2         <---------TOE2(3)<----------DOF2     <----------DOF2      ------>ZmHOX2a(2) ---------ATHB12   --------->AHL20(2)       --------->ARR11(3)         <---------ARR11(3) -------->MYB46(3) <---------AHL20(2)   --------->MYB52(1)             --------->ARR11(3)     -------   caacgattggtgagttttagattaattgatcaagctttaaagtaccgatcttagcttttgtgttttgttttttgatcttggatctgttttgtctaggtgt  16649600                 ----------->HVH21               --------->At4g35610              --------->GLK1(2)                                      --------->ARR11(3)              <---------ARR14(2)                                     <---------ARR11(3)              --------->ARR14(2)                          <-------TEIL<------ZmHOX2a(2)           --------->ANAC55(2)             <---------ANAC58  <---------At4g35610     <---------TOE2(3)            <---------GLK1(2)      --------->CCA1(2)     <---------TOE1(3)   ----------->GT1   <---------ANAC58<-----------RAV1(2) -->ALFIN1 <---------ANAC55(2)---------->DOF2           <---------ARR14(2)                 <---------ANAC46   ggattttaaggttaagtatctgacaattggagaaaagaaactcaagcttgcgatttgggatacaggtgagagatcaatactcttgttgttgttgtttgga  16649700  Previous    Next  AGI:  At1g43890.1    Description:  ATRAB18 (Arabidopsis Rab GTPase homolog C1); GTP binding. similar to ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G03530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60918.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Rab18 (InterPro:IPR015598); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 16649172    to: 16651079    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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