Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------  --------->AHL20(2)                                                                         -------- -------->TOE2(3)                               --------->YAB1                   --------->ANAC58---- ->ZmHOX2a(1)                         <---------ARR11(3) <---------GLK1(2)       --------->ANAC58---- ----ANAC58                           --------->ARR11(3) --------->ARR14(2) --------->ANAC58 -------- ----ANAC58         --------->At4g35610 --------->TOE2(3)<---------ARR14(2) --------->ANAC58 --------   tacattatttacagagataaacagctaaaattaggcttaagacctcaatatcaaaatcaaattcgccaaaatcaacacaagacaagtcaagaacaacgca  16626500        <---------TOE2(3)     <---------WOX13(1)   --------->ATHB12                                             --------->At4g35610               --- >GAMYB--------->YAB1                                      --------->YAB1        --------->ZAT6------ ->ANAC46                      --------->WRKY18(1)   --------->ANAC46          <-----------GT1------- ----->ANAC58                <------MYB46(1)     <---------AHL20(2)    --------->ZAT14       -------- ----->ANAC58                <------MYB83 <---------ARR11(3)    <---------At4g35610  --------->YAB1 ->ANAC58                   --------->MYB59      --------->AHL20(2)    <---------ZAT14       -------- ->ANAC58            <-----------------AGL1 ------>ZmHOX2a(2)<-------TEIL  <----------DOF2 --------->MYB46(3)   aacaaagattgatgatgcgatttatcaaattaggtcaaacacatgatccatttaaacacaatattcatctaactacacttttaacagtgataaacaacca  16626600                                                                                                 ----                                                                                                 ----            --------->ARR14(2)                                                           --------->ANAC55(1)    --------->LBD16                                                                      --------->ANAC58   --------->ANAC58                                                                      --------->ANAC58   --------->ANAC58                     <------ZmHOX2a(2)                         <---------HSFC1(2)   --------->ANAC46                    <---------ARR11(3)                         --------->HSFC1(2)   <---------ANAC55(2)         ----------->HVH21                                  --------->At4g35610   --------->ANAC55(1)    --------->ANAC58                                   <---------------------WRI1   --------->ANAC55(2)    --------->ANAC58                                <---------ARR11(3)     ---- ------->DOF2  <----------ID1  --------->DEAR3(1)                         --------->ARR11(3)  <------ ->GAMYB   ------>MYB46(1)--------->ANAC46--------->ATHB12         --------->ANAC58      --------->ANAC46 -->MYB46(3)<---------ARR14(2)--------->At4g35610     --------->YAB1    --------->ICU4 <---------ALFIN1 ->ANAC58  ------>MYB83  --------->WOX13(1)          <---------YAB1--------->ANAC58   <---------REM1(2) ->ANAC58<---------MYB59---------->DOF2--------->ARR11(3)        --------->CCA1(2)<---------At4g35610   aaaacccgtaaccaaattcgacaaaatcaagcagcgacgaagatcgattgaagcgattatagtggagataagcaaagatttcgaagcttacacgccagac  16626700                                 <---------HSFB2a(2)                                 --------->HSFB2a(2)        <------ZmHOX2a(1)       ------>ZmHOX2a(2)                                               -----        ===============================HOX2a_HOX2a                                              -----        ==============================HOX2a_HOX2a               <---------MYB55(2)              -----    ---------->DOF2            <------ZmHOX2a(2)   <---------DAG2<---------ALFIN1               -----  --------->AtLEC2        --------->ANAC58         <----------DOF2              <---------WRKY38(1) ----->ANAC58             --------->ANAC46        <---------ANAC58        --------->TOE2(3)    <----- ----->RAP2.6(2)        --------->MYB46(3)    <---------ANAC58  --------->MYB46(3)     <----------DOF2 ----->ANAC58  <---------YAB1 --------->ARR11(3)  <---------ANAC58     ----------->RAV1(1)    <------ ---ALFIN1 <---------MYB59--------->ANAC58    <---------ANAC58 ------->TEIL    --------->WRKY18(1)   cgccatgaaaggaccttattcttgtaacaagcgatctcgaagcgattgccttgctttttgagacgaaccactgcaacattagtcaacctcttttgcccta  16626800                                                          <------NtERF2                                                         <---------ATERF1(1)                                                         --------->ABI4(1)                                                         ------>NtERF2                                                        --------->RRTF1(2)                                                        --------->RRTF1(3)                                                        --------->RAP2.3(2)                                                        --------->ATERF1(2)                                                        --------->DREB2C(2)                                                        --------->DEAR3(1)                                                        --------->ANAC46 <--------P                                             <---------ATERF1(2)       <---------MYB46(3) ->MYB83                                                --------->RAP2.6(2)   --------->AHL20(2) ->MYB46(1)                                             --------->RAP2.3(3)   <---------AHL20(2) --->P                                                <---------ATERF1(1) <---------CCA1(1) ---->MYB52(1)                                       --------->ANAC46    --------->ARR11(3) ----ALFIN1                          --------->ARR14(2)--------->RAP2.3(1)<---------RVE1(1) ---SPL7                             <---------ARR14(2)--------->ERF1    <---------ARR11(3)         <   ccggttgcaccagcgtcttcgacatacttctctctcgcgaattttggtttccctctcgccgccactaaattttgggatatttatttgttgaaactgcaaa  16626900                                                                                                xxxxx                                                                                             xxxxxxxx                                                                                         <-----------GT1                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                    xxxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 <---------ANAC58                                                                                 <---------ANAC58 ---                                                                                 <---------ANAC46 xxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              <--------Pxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         *TSS                                            --------->ATHB12   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->ARR11(3)                                --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ARR11(3)    <---------ANAC58         --------->DAG2     ---------->DOF2xxxxxxxxxxxxxx     <------MYB46(1)        <---------ANAC58        ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <------MYB83           --------->MYB52(2)   --------->AHL20(2)  --------->TOE2(3)xxxxxxxxxxxxxxx ---------YAB1             <-------TEIL    ----------->GT1<------------CBF <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   atgtgataggtcttcacttgtttattaagttcgtggctaaatgtgaagaaaataaaaagttattggctaaaacttaaagggttgcctgaattttcagccc  16627000          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ----------->GT1 xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(fl3) xxxxxxxxx>smallRNA(le3) xxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(i2) xxxxxxx>smallRNA(fl3) xxxxxx>smallRNA(si3) xxxxxxx>smallRNA(si3) xxxxxxx>smallRNA(le3) xxxxx>smallRNA(si3)                                                                             xxxx xxxxxx>smallRNA(se3)                                                                            xxxx xxxxxx>smallRNA(le3)                                                                            xxxx xxxxxxx>smallRNA(se3)                                                                           ---- xxxxxx>smallRNA(fl3)                                                                           xxxxx xxxxx>smallRNA(si3)                                                                        <-------- xxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxx xxxxxxxsmallRNA(se3)                                                            xxxxxxxxxxxxxxxxxxxx xxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ZAT14                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxsmallRNA(si3)                                                         xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) x>smallRNA(se3)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >smallRNA(fl3)                          <---------ANAC55(2)            ----------->GT1   <----------DOF2 >smallRNA(se3)            ------>ZmHOX2a(1)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxx>smallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->AHL20(2)     ------->TEIL xsmallRNA(fl3)           --------->TOE2(3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----- >smallRNA(si3)  <---------ICU4 <----------DOF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---- xxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------AHL20(2)   xxxxxxxxxxxxxxx xxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tatactagttaaaatttcaacattccatcctaaacttttagtcacttgaaaaatcaccataaacaattttaatctcgataaaactacatgtactttcgga  16627100                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                               <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxsmallRNA(i)                            <xxxxxxxxxxxxxxxxsmallRNA(s)                            ----------->HVH21                            --------->DEAR3(1)                           --------->MYB46(3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 ------>NtERF2-------->P                <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxsmallRNA(s)             --------->ANAC46 ------>MYB83             --------->ANAC58 ------>MYB46(1)             --------->ANAC58--------->ORA47(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->LBD16        --------->ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <--------HAHB4    xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->YAB1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ICU4   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------MYB52(1)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(s) ----->GLK1(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)    <---------LBD16 xxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ICU4              --------->AHL20(2) xxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ATHB51 >smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------ATHB51          --------->ANAC46xxxxxxxxxxxxxxxx ---->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----ARR14(2)------>NtERF2--------->DEAR3(2) <---------YAB1      -------->P <-----------GT1 x>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <--   tttgttcttaaaactacgcctccaattgaaccgaccagttaaccgataattatacatccggtttgacttacccataatttaaccaaaactaatccgattt  16627200                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  <--                                --------->ARR11(3)                                                ---                                <---------AHL20(2)                        <---------YAB1       ------                                --------->AHL20(2)                      --------->AHL20(2)     <-----                                <---------ARR11(3)                      <---------AHL20(2)     ------                                <---------AHL20(1)                     --------->AHL20(2)      <-----                                --------->AHL20(1)            <---------AHL20(2)        <---------AHL20(2)         <-----------GT1       --------->AHL20(2)            <---------AHL20(2)         --------->AHL20(2)       <---------AHL20(2)    --------->AHL20(2)          <---------AHL20(1)  <---------YAB1 --------- <----------DOF2           --------->AHL20(2)            <---------AHL20(2) <---------AHL20(2)------- <---------DAG2     <---------CCA1(2)               <-------TEIL   <---------YAB1   --------->AHL20(2) >smallRNA(i)     <---------AHL20(2)           >>>>>>>>>>GT-3b--------->AHL20(2)    <---------AHL20(2) ---------GT1     --------->AHL20(2)  <----------DOF2    --------->AHL20(2) --------->AHL20(2)<------   tgactttattttaacccaatttatatccaaaaaatatattctttagaagaaaaatacattttatttattttcatttatttttataaaaaattaaaaataa  16627300           ----------------->AGL1           ----------------->AG    <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(2)   <---------AHL20(1) ------->AHL20(1) --------AHL20(2) ------->AHL20(2)    --------->AHL20(2)             <---------AHL20(2) -------AHL20(2)     --------->AHL20(1)         --------->AHL20(2) ------>AHL20(2)     <---------AHL20(2)         <---------AHL20(2)    <---------AHL20(2) --->AHL20(2)        <---------AHL20(1)   --------->ANAC46           <---------ARR11(3) ----AHL20(1)     --------->YAB1        --------->ANAC58<---------AHL20(1) --->AHL20(1)   --------->AHL20(2)      --------->ANAC58<---------AHL20(2) ----AHL20(2)  --------->YAB1           --------->ANAC46--------->AHL20(2)  ----------->GT1 >YAB1   <-----------GT1              ----------->RAV1(1)<---------AHL20(2)--------->MYB59 -->AHL20(2)--------------->AGL15    --------->ANAC46--------->YAB1  <---------AHL20(1)         ----- ---AHL20(2)<---------MYB59        <-----------GT1 --------->AHL20(2)--------->ARR11(3)      <-------   attaattaattttaccaaaataataaaataacaaaatataccacacaaaattatataataaaattttagtatatattttggtaataaacaaaatataccg  16627400  Previous    Next  AGI:  At1g43860.1    Description:  transcription factor. similar to unnamed protein product [Vitis vinifera] (GB:CAO60901.1); contains InterPro domain Shwachman-Bodian-Diamond syndrome proteins (InterPro:IPR002140) Range:  from: 16624508    to: 16626909    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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