Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------TOE1(3)                     --------->MYB52(1)                   <---------WOX13(1)                   <---------ARR11(3)                 --------->MYB52(2)          --------->YAB1<----------DOF2               <---------MYB52(1)         --------->YAB1--------->ARR11(3)   --------->WOX13(1)             ----------->GT1   <---------TOE2(3)<---------AHL20(2)  --------->ICU4                 --        ------->GAMYB         <---------DOF5.7(2)    --------->TOE2(3)     <---------ATHB12       <--     <-----------GT1        --------->DOF5.7(2) --------->AHL20(2)--------->YAB1      <xxxxxxxxxxxxxx   tgtgttttaacagactcgttaattgaaaacgataacgttttctctaataataaaacattatctttttgtcataacgaatcaattaagtccctagtttcaa  16550500                                                                                                <----                                                                                               <-----                                                                                         --------->ALFIN1                                                                                       <---------ANAC58                                                                                       <---------bZIP60(2)             <---------TOE2(3)                                                         <---------ANAC46         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         --------->O2         <----------DOF2                                                               ==============        <---------ARR14(2)                                                             <---------O2    <---------LBD16                                             <---------YAB1         --------->TGA1a  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------AHL20(2)       <---------TGA1a ------->YAB1<---------TOE1(3)                         <---------LBD16                 <---------ANAC58 -------ATHB12                                    --------->ATHB12                --------->MYB52(1) xxsmallRNA(i)<---------ZAT6     <----------DOF2<---------WOX13(1)     <---------ICU4------->GAMYB<--   atcatatggggatttagggttagggattttgctcggtttaggggtcttagattgatttggggatttattttagtcattacaacacaacgacgtggctctg  16550600                                     --------->AHL20(2)                                     <---------AHL20(2)                                    --------->AHL20(2)                                    <---------AHL20(2)                                --------->AHL20(2)                              <---------ARR11(3)                                      --------->AHL20(2)                       --------->AHL20(2)                                             <---------AHL20(2) ---GAMYB <---------YAB1      --------->ARR11(3)                               --------->DAG2 ------RAV1(1)         <---------AHL20(2)              <-----------------AGL1 ---------->DOF2 ===MYC_MYB--------->YAB1   <---------TOE2(3)   --------->ZAT6             --------->YAB1       ----- -------MYB46(3)      --------->AHL20(2)      --------->MYB52(1)     ----------->RAV1(1)       ------   ttgttggaaactataatacttcgaattaataagatttattaatttagttaacagtatttctaatatggccacaacaaaaataaagtatttatttagacag  16550700                                                                                         --------->LBD16                                                                                        --------->HSFC1(1)                                                                                        --------->HSFB2a(2)                                                                                        <---------HSFB2a(2)                                                                               <---------CCA1(1)         <---------AHL20(2)                                                   --------->ARR11(3)        <---------AHL20(2)                                                    <---------ARR11(3)        --------->AHL20(2)                                                   --------->YAB1        --------->AHL20(1)                                                 <---------TOE2(3)    --------->AHL20(2)                                                   <---------AHL20(2)  --------->TOE2(3)                        <---------AHL20(2)           --------->AHL20(2)    ------- --------->YAB1       <---------MYB52(1)   --------->AHL20(2)    <---------ANAC46    <-----------GT1< ---->At5g28300 <---------AHL20(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------RVE1(1)<---- ----->GT1   <---------ICU4  --------->HSFB2a(2)  <---------TOE2(3)  <------ZmHOX2a(1) <---------LBD16   taaacataaatttaatatttattcgttttgtcgagaattggagatttaaatcaacgttttcaatatgtcgaggatttaatgatattttttccagaattaa  16550800     <------------CBF    --------->ATHB51    --------->ATHB12   <---------YAB1                          ---------->DOF2                     <-----------GT1 <---------------AGL15                 ---------->DOF2                      ----------------------->TaNAC69(2) -->AHL20(2)                      --------->AHL20(2)                     <------------CBF -----------------AGL3         --------->YAB1                   --------->TOE1(3)                <<<< -------GT1                   <---------YAB1 ----------->GT1    --------->TOE2(3)*TSS      ----------   accctataattggagattaatggtccaaattgattataaaataaagaaagaaaaaaaaaaactaaaccttagcaaaattgttaacttctcttcgtcttct  16550900                              --------->ANAC58                              --------->ANAC58                         ----------->HVH21                       ======================================bZIP_DOF                  --------->RVE1(1)                 --------->ARR11(3)                                <---------MYB59                 <---------ARR11(3)                               --------->ANAC55(2)        ------>MYB46(1)      ------>NtERF2    <---------O2                               <---------ANAC55(2)        ------>MYB83     --------->DEAR3(1)--------->O2                          <---------------AtSPL8        <---------MYB59   ------>ZmHOX2a(1)   --------->TGA1a                   <-----------HVH21         <----------DOF2 <<<<<TBF1       --------->GLK1(2)                    <---------AtLEC2        <---------ANAC58<<<<<<< >ID1----------->HVH21 <---------TGA1a            <----------DOF2<-------TEIL <---------ANAC58<<<<<<<   tcttcctccgaccttggaaaatctctcgtgactcgctagtcttctctaatgtctttacatgtcaaggtacataacctattgcttactttgataccaaatt  16551000                                                                                         <---------TOE2(2)                                             ------>ZmHOX2a(2)                       <------NtERF2                                           <---------ARR11(3)                       ------>NtERF2                                           --------->ARR11(3)                       ----------->RAV1(1)                                      <---------ARR11(3)                           <---------ETT(2)                --------->ARR11(3)    --------->GLK1(2)                            --------->ETT(2) <<CBP60g      <---------CCA1(2)----------->GT1          <---------LBD16           <---------bZIP60(1) <<SARD1   <----------DOF2     ----------->GT1<----------DOF2                      --------->bZIP60(1)   tcacttagggctgctttaaatcttggtttaaaactggaaaaatctgatctttttcattttcagggacctgtttgtcaaacttgtggcgacataggttttg  16551100                                              <-----------HVH21                 =====================                                              <---------MYB52(1)          <---------ANAC58       <---                                           <---------LBD16                <---------ANAC58      <----                                          <---------At5g28300       ----------->RAV1(2)         -----           <----------DOF2               <-----------GT1       <---------GLK1(1)<------ZmHOX2a(2)<---   aagaagcacttgtcttttgtgactcttgtatgtttgagtctattcaccggtgagttcaattctcgatttcccctgtgcgtcgatcaaattgtgcctatta  16551200                                                                                             <-------                                                                                            ---------                                                                                     --------->ANAC55(2)                                                                                     --------->ANAC46                                                                                     --------->ANAC58        <---------AtMYB61                                                            --------->ANAC58      <-----------RAV1(1)                                                            <---------ANAC55(2)      ------>ZmHOX2a(1)                                                             <---------LBD16    ----------->RAV1(2)      --------->ARR14(2)                                 <----------DOF2 ============HOX2a_HOX2a<---------YAB1                                         --------------->AGL15 ---MYB83<---------MYB46(3)  <---------ARR14(2)            <---------ANAC46    <---------------AGL15 -----TOE2(3)   <---------WOX13(1)                         <---------ANAC58   ----------------->AGL1 ---->MYB59   --------->ATHB12                             <---------ANAC58   <-----------------AGL1 ---MYB46(1) <---------YAB1 <----------TaMYB80      <---------At4g35610    <---------GLK1(2)<--------   ggtttctcctgtggtttgattgaattatgcatatacctatttctcttgttcttcagctattgcttagggataacaccgattccttttacggaatacataa  16551300                <---------YAB1   <---------GLK1(1)                          <---------ATHB12            >>>>>>>>>TBF1 --MYB59      ----------->GT1           <---------WOX13(1)             >>>>>>>>>TBF1       -------->P >ANAC55(2) <---------ARR14(2)        --------->ATHB12        <-------GAMYB               <---------- -ANAC55(2)<------ZmHOX2a(1)         <---------YAB1          <---------ZAT6     ----------->GT1   cttggatttgtgaggattgtgataacagtgagagtgattctgattgcaatgaagttgatcagactgttaagaagaagaagaagagtagaaatcaacccct  16551400  Previous    Next  AGI:  At1g43770.1    Description:  PHD finger family protein. similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57269.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 16550881    to: 16552991    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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