Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                            xxxxxxxxx                                                                                           <---------                                                                                           <---------LBD16                                                                                     xxxxxxxxxxxxxxxx                                                                                    <------MYB46(1)                                                                                    <---------MYB46(3)                                                                                    <------MYB83                                                                                    <xxxxxxxxxxxxxxxx   ----------->GT1                                                                xxxxxxxxxxxxxxxxxxx   --------->YAB1                                                                 <---------WOX13(1) ------>SPL7                                                                    xxxxxxxxxxxxxxxx>smallRNA(i) -->NtERF2                                                                      xxxxxxxxxxxxxxxxxxxxx ---->ZAT18                                                             ----------->GT1xxxxxxxxxxxxxx -----SPL7                           <---------MYB52(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---At4g35610       <---------YAB1 --------->ATHB12       <---------AHL20(2)    --------->ATHB12 -->At4g35610   <-----------HVH21 --------->MYB46(3)     --------->AHL20(2)    <---------YAB1 <------ZmHOX2a(1)   gacgattgtaatttcaagtgtcatgaaacattttgaaccattggtttaatggttcaaaattaaaacgtttgcaagagttatatgattggttaaccaggag  16548100                                                                                    --------->YAB1        <-------GAMYB                    <---------AHL20(2)                      --------->YAB1        --------->At5g28300              --------->AHL20(2)                     <---------YAB1       ----------->GT1               --------->AHL20(2)                      <---------YAB1      <---------TOE1(3)              <---------AHL20(2)                      <---------AHL20(2)      <---------TOE2(3)          <---------YAB1                           --------->AHL20(2)      <---------ANAC46          <---------AHL20(1)                        <---------AHL20(1)     <---------At5g28300        --------->AHL20(2)                        <---------AHL20(2) <----------DOF2               --------->YAB1                             --------->AHL20(1) --->ALFIN1                   <---------YAB1                            <---------YAB1 xxxxxxxxxxxxx>smallRNA(se3) --------->AHL20(2)                        --------->AHL20(1) --RAV1(2)                   --------->AHL20(1)                        --------->AHL20(2) xxxxxxx>smallRNA(si3)     <---------ARR11(3)                        --------->AHL20(1) xxxxxxsmallRNA(fl3)       <---------AHL20(1)                        <---------AHL20(1)   ----------- xxxx>smallRNA(le3)        --------->AHL20(1)                       --------->YAB1 <---------YAB1  <- xx>smallRNA(se3) --------->YAB1<---------AHL20(2)       --------->AHL20(2)  --------->AHL20(2)    -- xxxxxxxxx>smallRNA(le3)   --------->AHL20(2)--------->AHL20(2) --------------->AGL15 <---------YAB1   gtgctattacggttaaactaaaataacaaaatattataatttataaattatacaaaatataaaataccaaaaatattatattattatgataaatgtgaaa  16548200                                    <---------AHL20(2)                                    -------->HAHB4                                 <---------ICU4                      --------->AHL20(2)                         <---------ARR14(2)                      <---------AHL20(2)                         --------->ARR14(2)                     --------->AHL20(2)                     --------->ANAC46                <---------AHL20(2)  <---------ICU4--------->AHL20(2)                --------->AHL20(2) <---------YAB1 <---------AHL20(2)                <---------AHL20(1) <---------ATHB51    <---------AHL20(2)                         ---             --------->YAB1     ------>ZmHOX2a(1) --------->AHL20(1)                              ---   --------->YAB1    <---------AHL20(2)           <---------AHL20(1)                              <-- >GT1     --------->YAB1       <---------MYB59   --------->AHL20(2)                               --- --------AHL20(2)<---------AHL20(2)<---------ATHB12   --------->AHL20(2)                          --- ------->AHL20(2)--------->AHL20(2)--------->ICU4<---------AHL20(2)    ------->TEIL ---------->DOF2   tttaaatataactaataataaaattaaattcttcctaattattcaaactaattaaattttatactcaaatatgcatttgcttcataaaaagaacatcatc  16548300                                                              <---------ANAC46                                                   <-----------GT1                    --------->YAB1                                                <---------ARR11(3)                    <-----------GT1                                                --------->ARR11(3)                <---------AHL20(2)                                                <---------AHL20(1)                <---------YAB1                                              --------->ARR11(3)               --------->AHL20(1)                                              <---------ARR11(3)     <---------HSFB2a(2)                                              <---------AHL20(1)     --------->HSFB2a(2)<---------YAB1 ------>ANAC55(2)                          --------->AHL20(2) <---------ANAC58--------->AHL20(2) ------>ANAC58                        --------->AHL20(2)      <---------ANAC58--------->YAB1 -------ANAC55(2)              <------ZmHOX2a(1)--------->AHL20(1)  <---------LBD16  <---------YAB1 ------>ANAC58                <----------ID1  --------->AHL20(1) <---------ZAT14 <---------AHL20(1) -------->GT1         ---------->DOF2 <---------AHL20(2)<---------DAG2     --------->YAB1   aagtaatatggaaatgacaaaaaaaaaagattaggacaaattaaaaaaaatattttcaatttttgggtgttctggattaataatattattacaatactta  16548400            <---------YAB1          --------->YAB1                                                               --------->AHL20(1)         <---------ATHB12                      ----------->GT1                <-----------GT1         <---------YAB1              --------->ARR11(3)                    <---------ICU4    <-------   --------->ARR11(3)              <---------YAB1                       --------->YAB1 --------->AHL20(2)   <-----------ARR10      <--------P--------->YAB1               ----------->GT1       <---------ARR11(3)   <---------ARR11(3)    <-------GAMYB   <---------YAB1 <---------MYB52(2)--------->ICU4    ---------   gttagtatcttatcattcttcagtttgggttgatactatgattttgatagagaaaaaaactaacattttgtgaataaaaattaccaccatatattaaagt  16548500                                                                 <-----------GT1                                                                <---------YAB1                                                              -------->ATHB1                                                              <---------ICU4                                                              --------->ATHB51                                                             --------->AHL20(1)                                                             --------->AHL20(2)         <---------HSFC1(2)                                  --------->ICU4         --------->At4g35610                                 <---------YAB1         --------->HSFC1(2)                                  <---------AHL20(2)               <------    <---------------------WRI1                      --------->ANAC58                          <------   <------ZmHOX2a(1)  --------->ICU4                --------->ANAC58                      <----------DOF2 <---------TOE2(3)  ---------->DOF2       <---------ANAC46<---------AHL20(2)           ---------->ID1 --TOE2(3)    --------->ZAT6        <---------TOE2(3)     --------->AHL20(2)     --------->ICU4 ->DOF2*TSS   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46             <---------YAB1   tttgaggaagaagcttacactgaaaagatgacattgttgatgtaatgtgtaaacaagcaaaaaattattacaactaagatgtcatttttgttctttaagg  16548600                 <---------TOE2(3)                 <---------TOE1(3)        <---------AHL20(2)    --------->AHL20(2)    <---------AHL20(2)                         <---------ICU4    <---------AHL20(1)                      <---------ICU4    --------->AHL20(1)                      --------->YAB1   <---------AHL20(2)                      <---------ATHB12                           ------->TEIL   --------->AHL20(2)  ----------->GT1     --------->ICU4              <---------AHL20(2) ---TOE2(3)  <----------DOF2       --------->ARR14(2)                <---------AHL20(2)      <------- ---TOE1(3)<---------YAB1         <---------CCA1(2)          ---------->ID1         <-------TEIL    <   tctaattaaatttatctttgaggtatggttactctcaaatctccaataatcaattcgatttttgtccctatatttttttgtttaagtgcatctattatct  16548700                                                ----------->GT1      <---------WRKY12                                               --------->DAG2        <---------WRKY38(1)                                      --------->TOE2(3)             --------->WRKY18(1)                                    --------->ARR11(3)             <-----------HVH21                                    <---------ARR11(3)           --------->DAG2 ----GT1                --------->ZAT14        <---------TOE2(3)--------->DAG2         ---------->DOF2 ---------AHL20(2)      <---------ZAT14    --------->YAB1      ---------->DOF2>>>>>>>>>TBF1       xxx   atttttttggttcaagagtttatttctgaactgaatgaaatcttagcataaggtaacatcgaagaaaaaggtcaatggaagaagaattttaaagaagaga  16548800                                            --------->YAB1                                     <---------ARR11(3)                                     --------->ARR11(3)                                     <-----------ARR10                                     <---------ARR14(2)                                        <-----                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <--------                           <---------AHL20(1)     <-----------GT1                      --------->YAB1                      ========================HOX2a_HOX2a                              <---------ICU4                      =======================HOX2a_HOX2a                              --------->ICU4     <---------GLK1(2)------>ZmHOX2a(1)------>ZmHOX2a(2)                            --------->YAB1     <---------ARR11(3)    <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------ATHB12     --------->ARR11(3)    --------->AHL20(1)  --------->ARR14(2)              <---------ATHB12------  <---------TOE2(3)  --------->TOE2(3)<------ZmHOX2a(2)                <---------AHL20(2)   --------- ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->AHL20(2) --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2)    <---------YAB1  <---------ATHB12 ---------   cattaaagatttttgagtttcttcctcaaaatattcaaggatcttatcagatttactaagtgtcattgtggattttaatcaataactaataatcatctga  16548900                            --------->AHL20(2)                            <---------AHL20(2)                           --------->AHL20(2)                        --------->AHL20(2)                       --------->AHL20(1)                       --------->ARR11(3)                       <---------AHL20(1)                       <---------ARR11(3) ----------AtSPL3   <---------AHL20(2)                                <----------DOF2 -At4g35610         --------->AHL20(2)                               <---------DAG2 --------->AtSPL8--------->AHL20(2)                               <-----------GT1 -->RAV1(2)      --------->YAB1        --------->GLK1(2)       <----------DOF2 >At4g35610     <---------ATHB12      <---------GLK1(2)  --------->YAB1                       -------   gtacgttttatactcccaataaaaaaatatttaattttcaaattctgaaaaacaaacaaacatagcttttacctttttatgcctcttcaacatatgaatc  16549000  Previous    Next  AGI:  At1g43766.1    Description:  pseudogene, putative phosphofructokinase beta subunit, similar to pyrophosphate-dependent phosphofructokinase beta subunit GB:AAC67586 GI:3790100 from (Citrus x paradisi); blastp match of 58% identity and 9.9e-12 P-value to GP|3790100|gb|AAC67586.1||AF095520 pyrophosphate-dependent phosphofructokinase beta subunit {Citrus x paradisi} Range:  from: 16548507    to: 16548855    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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