Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               --------                                                                                 ------>NtERF2                                                                                <---------TGA2(1)        ---------->DOF2                                                         --------->ANAC58       --------->AtMYB61                                                        --------->bZIP60(1)  --------->LBD16              --------->TOE2(3)          <---------At4g35610   <---------bZIP60(1) --------->ANAC46        --------->LBD16               <---------At4g35610      --------->ANAC58 ------->ANAC46        ----------->RAV1(2)     --------->At4g35610           ----------->HVH21 ------ALFIN1        <---------ARR14(2)        <---------At4g35610         <---------ICU4    ------>ZmHOX2a(1) ---->MYB46(3)     <---------PCF2            <---------WRKY38(1)           --------->YAB1   <-------- -ZmHOX2a(2)    --------->ALFIN1           <-----------HVH21      <----------TaMYB80 <---------CCA1(2) -->ARR14(2)   ------->PIF5  --------->ARR11(3)<---------ZAT2--------->At4g35610--------->TGA2(1) ---ARR14(2)   <-------PIF5  <---------ARR11(3)--------->ZAT2<---------At4g35610--------->ANAC46   cacccgagaccaaagctcgtggggaccctgagaccttagaaatatggtcagcagcgctgcttctgctgatattccacttatgacgccatctcttcctgga  16533100                                              ------>NtERF2                                             ----------->HVH21                                    ---                                             --------->DEAR3(1)                                 <----                         <---------MYB46(3)------>ZmHOX2a(1)                                    <----                       <---------MYB52(1) --------->TOE1(2)                                     <----                      --------->LBD16     --------->TOE2(2)                                --------->O2                    <---------LBD16     <---------HSFB2a(1)                                --------->TGA1a                  ------>MYB83          --------->HSFB2a(1)                                <---------O2                  -------->P           <---------ARR14(2)                                  <---------TGA1a                  ------>MYB46(1)      --------->ARR14(2)                                  --------->ZAT2                 <---------ALFIN1  --------->ANAC58            --------->AtMYB61           --------->At4g35610                <---------ALFIN1   --------->ANAC58      ----------->HVH21                 <---------At4g35610             --------->ANAC58    ---------->DOF2       --------->At4g35610                 <---------ZAT2 ->LBD16     --------->ANAC46   <------ZmHOX2a(1)      <---------At4g35610   <------ZmHOX2a(1) <----- -LBD16      --------->ANAC58 <---------TOE2(3)      <---------GLK1(1)    <---------LBD16<-----------RAV1(2)   ttttgaagacatagcaccccaacccggtggataaggaaaggaatcctccgacgggatagctgacaccaaaactgattcaggaagatgggactcaggtggc  16533200                  ----------->RAV1(2)                                        --------->AtMYB61          --------->HSFB2a(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <------ZmHOX2a(1)     <---------ZAT18      <---------ZAT18              --------->MYB46(3) -------->HVH21 <---------ALFIN1          <---------ZAT2               --------->TOE2(3)          --- -----ANAC46    --------->REM1(1)         --------->ZAT2            ------>ZmHOX2a(1)             --- -----ANAC58  ================RAV        --------->ANAC58         <---------ANAC58            <------ -----ANAC58  ----------->RAV1(1)        --------->ANAC58         <---------ANAC58            ------- -NtERF2  <---------HSFB2a(2)      <---------WRKY18(1)      <------ZmHOX2a(1)------->GAMYB   <-------   ttgacaggacttctagcaacacctgtagtcgacttcttgacccaagcagagcccttggcataggactgtcctgcctcaaccaaaacagtagaaggaacaa  16533300                       --------->ARR14(2)                       <---------ARR14(2)                  --------->ANAC46                                            <---------DOF5.7(2)     ----------------------->TaNAC69(2)                                   <---------ANAC58 ------>TOE2(3)   --------->ANAC58                                        <---------ANAC46          - ------>YAB1      --------->ANAC58                                        <---------ANAC58         -- ---KAN4(1)      <---------LBD16      --------->ANAC58           <----------DOF2                   <X -->KAN4(1)   <-----------HVH21       --------->ANAC58       <---------ZAT18--------->DOF5.7(2)   <-- --KAN4(2)   <----------DOF2   ----------->GT1  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                -----   tctcaatattcttccctttcacgcagttctgagaggtgataagccttggaggggtactactggagcgcttcttagagcgtgaacgaactcttcccttcca  16533400                     <---------AHL20(1)           --------->ARR14(2)                            ------->PIF5           <---------ARR14(2)                            <-------PIF5          <---------CCA1(2)                         --------->ANAC58    <---------ARR11(3)                              --------->ANAC58     --------->GLK1(2)    --------->ARR11(3)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ----------->HVH21 --------->DOF2      --------->AHL20(1)         <---------HSFB2a(2)      <---------ARR14(2) ------->YAB1        --------->ARR11(3)         --------->HSFB2a(2)      --------->ARR14(2) XXXXXXXXXXXXXXXXXXXXMIR447C                   <---------LBD16           --------->ARR11(3) -------ATHB12       <---------AHL20(2)  <---------MYB52(1)              <---------ARR11(3) ---->WOX13(1)    --------->YAB1         --------->DOF5.7(2)  ---------->DOF2    <-------TEIL   atcaaagatgttgtatccactaatattttgtcgaagcgaaggcgttatctctggaagcaagtgccaaagcttgagtatcttgatacatctcttgacactg  16533500                                                       <---------ANAC58                                                       <---------ANAC58                                                       <---------ANAC46                                                    ------>ZmHOX2a(1)                                                  ----------->RAV1(2)                                               --------->HSFC1(2)                                               <---------At4g35610                                               <---------ZAT2                               <--------                      --------->ETT(2)         <---------HSFB2a(1)                       <-----------GT1                      ----------->HVH21        --------->HSFB2a(1)                      <---------AHL20(2)              --------->ANAC55(2)              <---------HSFC1(2)                      <---------AHL20(2)          <----------DOF2                     ------->TEIL                             --------->AHL20(2)        --------->At4g35610                --------->ANAC58                       <---------WRKY12  -       --------->ARR11(3)                  --------->ANAC46                     --------->At5g28300 -       <---------ARR11(3)                  --------->ANAC58         *TSS       ----------->GT1      <   agcattggagagcttcacgttttgttgacaggtttttgcaactacacgaagctcctgtcttggaaacaaaactcaattcgacggtcaaatttaatctttt  16533600                                                                                                   --                                                                                                   --                                                                                                 ----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               <-----                             --------->MYB46(3)                                                ------  ----------->HVH21         --------->ANAC58                                  --------->ANAC58 ------ -ICU4     <---------ANAC46 --------->ANAC58                                  --------->ANAC58 ------ -------->O2               ------->GAMYB   <---------AHL20(2)        --------->MYB52(2)    ------>MYB46(1) -------->ANAC46          --------->MYB46(3)   <---------YAB1       <-------TEIL           ------>MYB83 ---------O2            --------->YAB1   ------->TEIL           <---------TOE2(3) ----------->RAV1(1)   caacgtgacaatggctgagaatacaataacaaccaattccatgaattttttgataaaactggaatcaaggttcgtttctcaagcccacatacctcccaac  16533700  ----------->GT1 ---->MYB46(1) ---->MYB83 --->GAMYB          --------->ATHB12 ---->MYB46(3)     --------->ICU4 --->ANAC58        <---------YAB1 >MYB46(1)   ---------->DOF2 ------------AGL1<------ZmHOX2a(1)                                                              ----- >MYB83    <---------HSFB2a(2)                  --------->ZAT2                   --------->ATHB12 -->P   --------->GLK1(2)         <---------TOE2(3)    ------>ZmHOX2a(1)        <---------YAB1  ----- --->ANAC58<---------YAB1        <-----------GT1<---------At4g35610   <---------CCA1(2)<-------GAMYB   caaatgggaaattctgaaaggatgattagaactattaacaatgttattcgagctctcctatttcaagctcgtctatctccttgttattgggttgaggcac  16533800                           ------>ZmHOX2a(1)                       <---------ARR11(3)                  ------>ZmHOX2a(1)     --------->GLK1(1)                               --------->TOE1(2)                 --------->TOE2(3)    --------->At4g35610                              ----------->RAV1(2)              --------->ARR14(2)      <---------At4g35610                 --------->YAB1--------->TOE2(2) <-----------RAV1(1)   --------->ARR11(3)                              <----------DOF2------>MYB83 ---->ANAC58  <---------ARR14(2)  <---------ALFIN1                   ------>ZmHOX2a(1)------>MYB46(1) ---->ANAC58 <---------CCA1(2) --------->ANAC46           ------>ZmHOX2a(1)           -------->P   taaatgttgttgttcatatcctaaaaatccttccctccacagctatccaaaatcaaattcctcatagcctcctctttcataaaaatccaacctgtgatca  16533900                                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <<<<<<<<<WRKY18      --------->ANAC58                                                <-----------HVH21      --------->ANAC58                                            --------->GLK1(2)       <---------WRKY38(1)               <---------ANAC58       --------->WOX13(1)            <---------WRKY12               <---------ANAC58     <---------ATHB12     <-----------HVH21      <---------DEAR3(2)           <---------ANAC58  <---------ZAT2 <---------ARR14(2)    <------ZmHOX2a(1)   <----------DOF2           <---------ANAC58  --------->ZAT2 --------->ARR14(2)--------->DEAR3(1)<---------MYB46(3)   ccttcgagtttttgggtgcttatgttttccaagcttgaatcattcaaatctgtcaaaactatcaccgaggacaacgccttgtctgttcctttggtatcca  16534000  Previous    Next  AGI:  At1g43760.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40390.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Endonuclease/exonuclease/phosphatase (InterPro:IPR005135) Range:  from: 16531320    to: 16533505    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g43763.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.9e-96 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata) Range:  from: 16533568    to: 16535842    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version