Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ARR11(3)                       <---------ARR11(3)                      <---------At4g35610                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------TOE2(3)              --------->AHL20(2)              <---------AHL20(2)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ICU4           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->AHL20(2)          --------->AHL20(2)           <---------AHL20(2) <---------YAB1          <---------ATHB51     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <---------AHL20(2)       --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------AHL20(2)       --------->AHL20(2)       <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------RVE1(1)        <---------AHL20(2)      --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------CCA1(1) <---------AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->ARR11(3)<---------AHL20(2)         <--- ---->MYC3--------->ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------YAB1<---------AHL20(1)    ---- -----MYC3<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ARR11(3)--------->AHL20(2)        ----- ----->O2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->YAB1 <---------AHL20(2)       --------->ANAC55(2) ------O2 <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2)<---------AHL20(2) ----->TGA1a<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------TOE2(3)--------->AHL20(2)     <-----------GT1   tgtgtctattaaataattaatgtaagctcttcaacttctaatttataggttaatgatatttttattatttaattttatatattatttaattttacatatt  16480300                               <---------ANAC55(2)                               --------->ANAC55(2)     <---------YAB1                             <-----------GT1          --------->AHL20(2)                      --------->AHL20(2)              <---------AHL20(2)                      <---------AHL20(2)     <---------AHL20(2)                  <---------AHL20(2)         --------->AHL20(2)                  <---------AHL20(2)                  --------->AHL20(2)      --------->YAB1                       <---------RVE1(1) --------->YAB1  --------->AHL20(2)      <---------AHL20(2)                    <---------CCA1(1) ------AHL20(2)  --------->AHL20(1)     --------->AHL20(2)                    --------->ARR11(3) ----->AHL20(2)  <---------AHL20(1)     <---------AHL20(2)                    <---------ARR11(3) ---->AHL20(2)   <---------AHL20(2)<---------ARR11(3)--------->YAB1           <---------GLK1(2)     -   taattatactattactaaatttattttaatattacatgattttttaataaaactattttaatagttttctcatacttgaagattttttttgtaatccaaa  16480400                                                                    <-----------GT1                                                         <---------YAB1                            <-                                    <---------ICU4      <---------AHL20(2)                         <-                                    --------->ATHB12    <---------AHL20(1)                         <-                                   --------->ICU4       --------->AHL20(1)                        ---                                   <---------YAB1      --------->YAB1                             <--                                   <---------ATHB12    --------->AHL20(2)                        ----              <---------YAB1  <---------ANAC55(2)      <---------AHL20(2)                       <----       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ICU4<---------AHL20(2)           <-----       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->GT1--------->AHL20(2)          <-----------      <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------AHL20(2)--------->AHL20(2)---- --------->DOF2--------->YAB1 --------->ANAC55(2)  --------->ICU4 --------->AHL20(2) ----------->GT1<   ttcaaagtatgagtgtatcatagtcgtgaattacttaatgatttgagtaagtaaaaattatatttaaattaaacaatacaaaaaaattcgaaaaaaccgc  16480500       --------->LBD16      <---------ANAC46     <---------LBD16    <---------ANAC46  --------->ARR14(2)  <---------ARR14(2) <---------CCA1(2) --------ANAC58 --------ANAC58 --------ANAC46                         --------->MYB46(3) --->NtERF2                             ----------------->AGL3 ----NtERF2                    ----------->GT1               <----------DOF2 -->NtERF2             <---------ARR11(3)<---------------AGL15 -----DEAR3(1)         --------->ARR11(3)--------------->AGL15   <----------DOF2 ----LBD16 ----------->GT1    <---------TOE2(3)            --------->At4g35610 ---OsCBT  --------->YAB1   ---------->DOF2    --------->HSFB2a(2) ----->LBD16         ----------->GT1  <-----------GT1      --------->ZAT2  <----------DOF2<---------- ---------SPL7     ---------->DOF2  <---------MYB52(2)<-----------GT1<-----------GT1   <---------KAN4(2)   ggcgtatcgcggatgataaaaaaaagataataaaggtaaataaccacttatagaataaaccagctttcttttttcttctttttgcgaagaataaaccagc  16480600                                   <---------AHL20(2)                --------->GLK1(1)          <-----------GT1    ---------->ID1                      --------->HSFB2a(2)      <---------AHL20(1) <---------ANAC58                        --------->HSFC1(1)  <---------AHL20(2)  <-----------GT1         <----------DOF2    <---------HSFB2a(2) --------->AHL20(2)<---------AHL20(2)  <---------AHL20(2)        <---------HSFC1(1)    *TSS -GT1 --------->AHL20(1) <---------ANAC58  <-----------GT1   --------->TOE1(2) ------------>CBF   ttatttaatatttttccatatttttttccttgtcgattttttttatttctttttgccctaaatcgttcgagaaacccaaaatccaatcccttgtctaatt  16480700                                                <-----------ARR10                                                <---------ARR11(3)                                                --------->GLK1(2)                     <---------YAB1                                            <------ZmHOX2a(1)  <<<<<<<<<MYB98        <---------AHL20(1)                                ------>ZmHOX2a(1)       --------->YAB1               <---------AHL20(2)                               --------->TOE2(3)--------->ARR11(3)        <----------DOF2   <--------                         <----------DOF2   ----------->GT1   ----------->GT1         --------->AHL20(1)    ------>NtERF2        <---------DAG2   --------->MYB59    <---------YAB1   <---------LBD16       -   catcgatgcccaaaccaaaattgaaaactttatcctcaagagattaggaaaatctcattcattatgttaaaaatcccttttggggattatatttatcaga  16480800              <---------ANAC58              <---------ANAC58              <---------ANAC46     --------->ARR14(1)     --------->CCA1(2)                               --------->LBD16    <---------ARR14(2)                              <---------ANAC46                              ---    <---------GLK1(2)                           ------>ZmHOX2a(2)                           <--------    --------->ARR11(1)            ---------->DOF2  <---------LBD16                          ---------    --------->ARR14(2)   --------->ATHB12     --------->ARR11(3)                     <-----------GT1 -YAB1<-------TEIL      <---------YAB1        <---------ARR11(3)             <---------MYB52(1)------ --------->DOF2         --------->ICU4   --------->GLK1(2)    ----------->RAV1(1)   <-----------GT1 -   gaaaaagattcgaattgagtgtcttcatgatttgggcaaagctaatctgatcttgcggagacaacaacaaaaattgtctgttttttttaccaattcgtaa  16480900                                        --------->ARR11(3)                                 --------->LBD16               <------ZmHOX2a(2)                              ------>ZmHOX2a(1)               --------->ARR14(2)                             --------->TOE1(2)               <------NtERF2       --------->CCA1(2)         ---------->DOF2    ------>ZmHOX2a(2)              <---------ANAC58     --------->ARR11(3) ---->GAMYB                <------ZmHOX2a(2)               <---------ANAC58     <---------ARR14(2) -ANAC55(2)               --------->ARR14(2)     <----------DOF2        <----------ID1 >ANAC55(2)               <---------ARR14(2) <---------CCA1(2)<---------ARR14(2)--------->ARR14(2) --->MYB52(1)       --------->ATHB12    --------->GLK1(2)  <---------ANAC46     <---------ARR11(3) --------->DOF2    <---------ATHB12     <---------ARR11(3)<---------LBD16     ----------->ARR10   cggaaagtgttcaaagttccaatctttggatcctccgagcaaaatctctatcttttcaatggcggatcatcaagaagacgaagatttgaaattggctctt  16481000                                                                                =====================                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                        --------->GLK1(1)                                                                       <---------ARR11(3)                                                                       <---------AGP1                                                                       --------->ARR14(2)                                                                       <-----------ARR10         <---                                                                       <---------ARR14(2)      ------                                                                      <---------CCA1(2)      <-------                                                                      <---------ARR14(1)     --------                                                                   ------>ZmHOX2a(2)        ---------                                                                   <---------LBD16        --------->MYB46(3)                                                                  <------ZmHOX2a(2) ----------->GT1                               --------->MYB52(1)                <---------ARR14(2)--------->ALFIN1                       ------>ZmHOX2a(1)                   --------->GLK1(2)    <-----------RAV1(1)<-                     ----------->RAV1(2)               >>>>>>>>>TBF1 --------->LBD16<---------MYB46(3)                    ------>ZmHOX2a(1)               >>>>>>>>>TBF1--------->ARR14(2)<---------AtMYB61   aagatgagtatgcaatacaatcctcctgagccaaaacggagcaaacccattgaagaagaagaaactggatccggatctcaatctggtggtgaatcaccgg  16481100                                         --------->At4g35610                                         --------->ZAT2                                         <---------ZAT2                                         <---------At4g35610                                      <---------ZAT2             <-------GAMYB            --------->At4g35610            --------->MYB52(2)        <---------At4g35610            <---------DEAR3(2)       <-----------RAV1(1) ====RAV ------------>AtMYB77      --------->At4g35610 ------DEAR3(1)          <---------At4g35610      <---------ANAC58 --->LBD16 <---------DEAR3(1)      <---------At4g35610 --LBD16 <-----------HVH21         <---------ZAT2 <---------ANAC58 --->RAV1(2)<---------MYB46(3)     --------->ZAT2 <---------ANAC46                ------>ZmHOX2a(1) >MYB52(1) <---------TOE2(2)      <-----------RAV1(1)                       ------>ZmHOX2a(1) -----NtERF2--------->MYB55(2)   <---------RAP2.6(2)               ------>ZmHOX2a(1)     ---------->DOF2   aggcgaaatctcgtcggttgcagagagagcttatggctgctgctgctgagaagcgtatggttttgtttcctaagagtccttctcctgttaacaaagctag  16481200  Previous    Next  AGI:  At1g43690.1    Description:  ubiquitin interaction motif-containing protein. similar to H0525E10.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43646.1); similar to OSJNBa0028I23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE04637.3); contains InterPro domain Ubiquitin interacting motif (InterPro:IPR003903) Range:  from: 16480687    to: 16485277    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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