Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->ICU4                         --------->YAB1                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 <-----------ARR10                 <---------ARR14(2)                                              <---------ARR11(3)                 --------->ARR11(3)                                              --------->ARR11(3)                 --------->ARR14(2)                                      --------->ARR14(2)                 <---------ARR11(3)    --------->MYB52(1)                <---------ARR14(2)                <------ZmHOX2a(1)     ---------->DOF2     --------->TOE2(3)      <---------GLK1(2)      <---------GLK1(2)  ----------->GT1      <----------DOF2            ------->TEIL   tagaaatagaatttgtaaggatcttaatggtaatatttaacaaagggactttggctaaaacctctaccaaaaacgtatatgtagatttttgagtaaacat  16426600                      <---------AHL20(2)                   --------->TOE2(3)                 <---------AHL20(1)                 --------->AHL20(1)              --------->AHL20(2)       --------->TOE2(3)       --------->TOE1(3)     <---------ARR11(3)                                                     --------->TGA1a         <     --------->ARR11(3)  <---------ICU4                                     <---------TGA1a         -    <---------GLK1(1)--------->AHL20(2)                          <-----------GT1           <---------ANAC55(2)    --------->GLK1(1)<---------AHL20(2)   <---------ANAC46 <-------TEIL   <---------ALFIN1 <---------YAB1   atacagaaatcttaaaaaaaatattaattttgaccccaaatttgacctgtattcaaataagttcatataacttcacacacttgagaagaaattacgaaaa  16426700                                                                            ------>MYB46(1)            <---------ARR11(1)                                              ------>MYB83            ------->TEIL                                                  ===========================            <-----------ARR10                                             <---------MYB59            --------->GLK1(2)                                             --------->AtMYB61            <---------ARR14(2)                                            ------->GAMYB            --------->ARR14(2)                                           --------->MYB46(3)           <---------GLK1(2)                                            -------->P           <---------ARR14(1)                                           ------>MYB46(1)           <---------CCA1(2)                                            ------>MYB83         --------->LBD16                                              --------->AtMYB61        --------->HSFB2a(2)                                         >>>>>>>>>>MYB80        <---------HSFB2a(2)                                      --------->AHL20(2)       <---------LBD16               ------------>CBF            <---------AHL20(2) ---------At4g35610             --------->At4g35610   ---------->DOF2--------->MYB46(3)             < -------->At4g35610        <-----------GT1         --------->ANAC46<-----------GT1 <------------CBF <   tcagcagtttcccgaatcttacaaacgtataaccagatggccaatgtaatttcactcaaaggcccatttaaaccaaccaaacaaatattgaacggcttca  16426800               -------->ABF1               ------->MYC3               ------->MYC4               <-------MYC4               <-------MYC2               <-------MYC3               ------->MYC2              <---------TGA1a              --------->TGA1a              --------->O2              <---------O2              --------->ANAC55(2)                                                              ------              <---------ANAC55(2)                         ------------>CBF              <---------ARR11(3)      --------->At4g35610                          --------->ZAT6                       <---------ARR14(2)      ----------->RAV1(2)                       <---------MYB52(1)                      --------->ARR14(2)    <---------ALFIN1                   --------------->AGL15                           <---------CCA1(2) =======================MYC_MYB    --------->GLK1(1)    --------->ANAC46          <-----------GT1  -- -----------HVH21           <------------CBF<-----------GT1                   XXXXXXXXXXXXXXXXXXXX>MIR4239 -----------TGA1      <---------ICU4   <---------------AGL15                ----------->GT1 ------>ZmHOX2a(1)   agcgtcacacctgaacacgtgtcaacatcacattgcgatttccatttttcgttactctactccaatttccattttgttttgttatttccatatcctcctc  16426900                               --------->YAB1                               <---------ICU4                            <---------ICU4                           --------->ICU4                           <---------YAB1                         --------->YAB1                                                           <--                        <---------YAB1                                                            <--                       <---------ARR11(3)                                             <---------MYB52(1)                       --------->ARR11(3)                                            <---------SPL7                   --------->YAB1<---------YAB1                                     <---------ANAC58                  <---------ATHB12                                                  <---------ANAC58                  ------------>CBF         <-----------GT1     --------->MYB46(3)  --------------->AtSPL3 >ZmHOX2a(1)    --------->WOX13(1)     <---------GLK1(2)    --------->LBD16      <-----------GT1 ---- --------->TBP------------>CBF<---------YAB1       <------------CBF   <---------TOE2(3)          <---   tatatatacacatagtatcaatcaatatcattatcatcacagattatacaactcattgtttccgaacaaactagggttttgtttttccgttcgatttcag  16427000                                               --------->ANAC58                                               --------->ANAC58              <---------TOE2(3)        --------->HSFB2a(2)   <-----------RAV1(1)                 <---------HSFB2a(2) -------RVE1(1)          <-----------GT1  ---------->DOF2           <------NtERF2        <----------- -------CCA1(1)       ----------->GT1--------->At4g35610          <---------DEAR3(1)     ------------ ----->ARR11(3)<---------YAB1    --------->ARR11(3)           ------>ZmHOX2a(1)    --------->ATHB12 ------ARR11(3)--------->ICU4    <---------ARR11(3)       <---------SPL7          <---------YAB1-----   atattttgttgtcgataatgtttgtagtaacaaaacatcttctgcaaagacggaagaggtcgtcctcgtcgtcgtcttgctacgatgatttcttcaagag  16427100                                                                                                  ---                 ----------->GT1                                                                  ---         --------->ANAC46             --------->ANAC55(2)                                         ---         --------->ANAC58             --------->ANAC58                                            ---         --------->ANAC58             --------->ANAC46                               >>>>>>>>>WRKY18        <---------LBD16 ---------->DOF2       <----------DOF2        <---------HSFC1(2)         <---- ----AGL15    <---------ANAC46        <---------ANAC55(2)       >>>>>>>>>TBF1        <---------WRKY18(1) --->AGL15    <---------ANAC58        --------->ANAC58       >>>>>>>>>TBF1         ------>ZmHOX2a(1) ------>GT1   <---------ANAC58--------->At4g35610   <-----------HVH21--------->HSFC1(2)       -------   gttacaaaaccacggagcgtggtttaaaaagcatcttactacgcaactcttttctgtcacgaagaagaagaagcttcacttagtccttgacttagaccac  16427200                                                                                       --------->ANAC58                                                                                       <---------ANAC55(2)                                                                                       --------->ANAC58                                                                                       --------->ANAC55(1)      <---------ALFIN1                                                                 --------->ANAC55(2)     <---------ZAT18                                                                   --------->ANAC46     --------->ZAT14                                                          ------>ZmHOX2a(2)     <---------ZAT14                                                         --------->CCA1(2)   --------->REM1(1)                          <-----------ARR10              <------ZmHOX2a(2) ------>ANAC55(1)                   --------->ANAC58                        --------->ARR11(3) ------>ANAC46                      --------->ANAC58--------->HSFB2a(2)     --------->ARR14(2)      < ------>ANAC58                      --------->ANAC46<---------HSFB2a(2)     <---------AGP1  <-------- ------>ANAC58               ------>MYB83     <---------ARR14(2)            <---------ARR11(3)  ----- -----ALFIN1--------->ZAT14  ------>MYB46(1)  --------->ARR14(2)            <---------ARR14(2)  ----- -->AtMYB61 <---------ZAT14--------->AtMYB61  --------->ARR11(3)            --------->AGP1--------->MYB52(1)   acgctactccactctgttctggtttcagacctatccaaacgcgagaagtatctactcgaagaaactgattcaaggcaagatctatggagacgcaacgtag  16427300                 --------->DAG2            <---------YAB1       ------->TEIL    <---------ANAC55(2)                                                      ------->MYC2    --------->ANAC55(2)                                       --------->ARR11(3)  --------->ANAC46 --------->ARR14(2)                                           <---------ARR11(3)  <<<<<<<<<<<<<<<<<LFY <---------ARR14(2)                                       ---------->DOF2    ------->MYC3 -------GAMYB--------->YAB1 <----------DOF2         --------->ANAC58         <-------MYC2        >>>> -ANAC46 <---------AHL20(2)<---------DAG2           --------->ANAC58         <-------MYC3   <-------- ------->MYB.PH3(1) --------->TOE1(2)        ======================================================== ------->AtMYB77---------->DOF2              <---------------AGL15         ------->TEIL    <--------P   acggttacgaatttatcataaagctacgaccttttcttcatgagtttctcttagaagccaataagctcttcacaatgcacgtttacacaatgggtagttc  16427400                                 <---------YAB1                                 --------->LBD16                 <---------REM1(1)    --------->DAG2      ---------->DOF2            ------>ZmHOX2a(1)   --------->ANAC58             --------------->AGL15                                --------->YAB1   --------->ANAC58       <---------WOX13(1)                                       --------->AHL20(2)   <---------ANAC46  --------->At4g35610                                         ====================   --------->ANAC55(2)  --------->ATHB12                                         ------>ZmHOX2a(1)  -   <---------ANAC55(2) <---------YAB1---------->DOF2                             <----------DOF2  ---   --------->ANAC46  <---------At4g35610      <----------DOF2               --------->ANAC58      <-- >>>ZML2      --------->ALFIN1 ------>ZmHOX2a(2)                        --------->ANAC58      <------ -MYB46(3)<-----------RAV1(2)--------->ARR11(3)               <---------YAB1--------->ANAC58  ------- ===============================================MADS_MADS----------->GT1--------->ANAC58 --------->ANAC46   tagttacgcaaagcaggtgttgaagctgattgatcctgataaagtatactttgggaaacgagttataactagagaagcaagtccttttaataagtcactt  16427500  Previous    Next  AGI:  At1g43610.1    Description:  NLI interacting factor (NIF) family protein. similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G43600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47916.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain FCP1-like phosphatase, phosphatase domain; (InterPro:IPR011947) Range:  from: 16427018    to: 16427785    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version