Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------YAB1                                                                                   --------->ICU4                                                                                 --------->YAB1                                                        <---------ANAC58        <---------YAB1        <---------ARR11(3)                              ----------->GT1         --------->ICU4        --------->ARR11(3)                              <---------ANAC46      --------->YAB1        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ANAC55(2)  <---------YAB1   <---------ANAC46                                     <---------ANAC58     --------->ICU4 --------ANAC58                                   <---------TOE2(3)        --------->YAB1      <----- --------ANAC58        <---------ZAT6      --------->AHL20(2)           <----------DOF2     <-------- ------>ATHB12   --------->MYB111(1)       --------->YAB1           <---------GLK1(1)     <---------At4g35610 -MYB59 <---------ARR14(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -DAG2  --------->ARR14(2)--------->ATHB12<---------ATHB12       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) >TOE2(3) ------>ZmHOX2a(2)     <---------WOX13(1)<---------TOE1(3) --------->GLK1(1)    <---------YAB1   tgattgtgtagatcgtgagtagttagagttattgatagattgcaatgaaattagggtttcgtgaattgggatttctttgatgatgatgattctgatgatt  16416200                    <---------AHL20(2)               <---------MYB52(1)        <------MYB83              --------->TOE2(3)          ----------->GT1            <-------TEIL                 <------MYB46(1)           --------->GLK1(2)            --------->MYB59           --------->ARR14(1)<---------ANAC46                                   <----------DOF2    <-------GAMYB--------->MYB52(2)<---------AHL20(2)                  --------->ATHB12   <---------MYB46(3)        <---------ANAC58                         <---------YAB1   --------->MYB52(2)        --------->ANAC55(2)                      --------->ICU4 ----YAB1 <---------GLK1(2)  <---------ANAC55(2)<---------AHL20(2)  --------->YAB1 -YAB1  ----------->ARR10    <---------ANAC58  --------->AHL20(2)  <---------MYB52(1)   tttgtttgttgagattcgttagtttattgtttcgtattgaatttggttataaaatcaacaaattactcagttatgatttcttctttgttttagtgaaatt  16416300                                            <---------ANAC55(2)                                           <---------ICU4                                          --------->ICU4                       <----------DOF2<---------ARR11(3)        <---------ANAC58              --------->ARR11(3)                                   ----------        <---------ANAC58            ----------->GT1          --------->At4g35610          --------->DAG2        <---------ANAC55(2)       <------ZmHOX2a(1)          <---------At4g35610        ---------->DOF2        <---------ANAC46     <---------REM1(1)         <---------TOE2(3)         --------->YAB1        --------->ANAC55(2) <---------TOE2(3)  ---------->DOF2                 <---------WOX13(1) ---   agccttgatttcgtattggttctgtcttttaatgtaggaagataataagtaaagtttgagattagctaacacacttctctaattgataacaaaaggtata  16416400                                                                                       --------->YAB1                                                             <------------CBF  xxxxxxxxxxxxxxxxxxxxxx                  <------ZmHOX2a(1)    <---------ANAC46     --------->ATHB12   xxxxxxxxxxxxxxxxxxxxxx ->GT1 <---------MYB46(3) <----------DOF2           <-----------GT1           <---------ANAC58 ------->DOF2  <-----------RAV1(2)  --------->GLK1(2)     <-----------HVH21   <---------ANAC58   aaaagagatttgttgatgcaggagttagcttttgtaatattctgtgtttgtgatttactctgtcattggaagagactatgtcttgcctagtataatctct  16416500                                                                                      <---------YAB1                                                                           ------->GAMYB                                                                        --------->MYB52(1)                                                                       <---------WRKY12                                                                       <---------WRKY45       <------                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <-----------GT1                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ARR11(3)                                 <----------DOF2   --------->ICU4<------           <---------GLK1(2)                  ----------->GT1<---------ANAC58  <xxxxxxxxxxxxxxxxxxxxx           <---------ARR11(3) --------->ANAC55(2)     ------------>CBF <---------WRKY38(1) xxxxxxxxxx x>smallRNA(le3)        <---------WOX13(1)   --------->DAG2  *TSS<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) x>smallRNA(si3)       <------------CBF     ---------->DOF2  <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxx   atgtgcgaaactagattttctatccgattgatacttgttagaagtataaagtaaaactcaatggcttttgtagtcaacgggaatgagtataatttggctt  16416600                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <-----------GT1                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      <-                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <-                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       xxx                     <---------------AGL15               --------->HSFB2a(2)                      <-- ---ANAC58           --------------->AGL15               <---------HSFB2a(2)<----------DOF2       --- ---ANAC58          ----------------->AGL1  <---------ATHB12         --------->DAG2        <---------ATHB12 xxsmallRNA(si3)    ----------------->AGxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(2) xxxx xxxxxxxxxxxxx>smallRNA(le3)     --------->REM1(1) <-----------GT1  ---------->DOF2    <xxxxxxxxxxxxx xsmallRNA(le3)     ----------------->AGL2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxx   actatctcactgatgaaatttatccaaaatgggctacatttatccaatctatttcacttccacaagatgaaaaagcttctttatttgctacaaatcaaga  16416700                    ------->MYC2                    <-------MYC2                    <-------PIF5           --------->ARR11(3)           <---------ARR11(3)         --------->ICU4       ---------->DOF2<-------TEIL     <---------RAP2.6(3)    <---------ANAC46<-------MYC3 --------ANAC58     ------->MYC3 --------ANAC58     ------->MYC4 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------MYB52(1) -------HSFC1(2)    ------->PIF5        --------->ZAT2 ------>HSFC1(2)  ------->TEIL          <---------ZAT2                                            <-- xxxxxxxxxxxxxxxxxxx>smallRNA(s2)      --------->ANAC58           ------>ZmHOX2a(1)          <------- xxxxxxxxxxsmallRNA(si3)               --------->ANAC58       --------->ARR11(3)           --------->GLK1(2) xxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                ----------->GT1   agcttgccgtaaagatgttgaacgtgcatttggagttttgcaagctcggtttgctattgtcaaacatcctgctcttatttgggataagataaaaatcggg  16416800                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --                                                             --------->ANAC46              <---------HSFB2a(2)                                                          <-------TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                         --------->CCA1(2)--------->ARR14(2)     <xxx                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ANAC46                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              --------->HSFB2a(2)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------LBD16                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------ARR14(2)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->ARR14(2) <-    <---------YAB1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxx -------KAN4(2)                 --------->YAB1          <---------ARR14(2)<---------ARR14(2)--------- --LBD16    ----------->GT1    <---------YAB1           --------->ARR14(2)------->TEIL  --------->ARR14(2)   aatattatgcgagcatgtataattcttcacaatatgatagtagaagacgaacgagatggatacactcagtatgatgtatccgatttcgcacatccggaat  16416900                                                                                         <xxxxxxxxxxx                                                            <---------YAB1               ------>ZmHOX2a(2)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ---    <---------ARR11(3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------At4g35610 ------->At4g35610                              --------->ARR11(3)                      --------->At4g35610 xxxxxxxxxxxxxsmallRNA(s)       <---------LBD16 <---------ARR14(2)                      <xxxxxxxxxxxx --------At4g35610    <-----------GT1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  xxxxxxxxxxxxxxxx x>smallRNA(fl3)   <---------GLK1(1)           <---------CCA1(2)                  xxxxxxxxxxxxxxxx>smallRNA(s) >LBD16           >>>>>>>>>>GATA-1  --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxx   cagctagttcttcacaagtggatttcacctattctacggacatgccttcaaatcttggtaatatgatggccactcgaacccgacttcgtgatcggactaa  16417000                               --------->ARR14(2)                      <-------GAMYB                     <------MYB83             <---------At4g35610          ---------->DOF2   <---------------AGL15 xxxxxsmallRNA(s)   <---------AtMYB61         <------MYB46(1)           <-----------TGA1 ------>YAB1 --------->At4g35610              <------MYB83             --------->YAB1           <---- xxxxxxxxxxxsmallRNA(le3)  <-----------------AGL1          --------->TOE2(3)               <---------AHL20(2) xxxxxxx>smallRNA(s2)<------MYB46(1)         --------->MYB59       <---------YAB1         --------->AHL20(2) xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ARR14(2)          --------->YAB1  --------->WOX13(1)  <-----   gcatgaacacttaaaagctgatttggttgaacatatatggcaaaagtttggtccgattcaagcttaattctaatcgtcattcaagtttttcatttaatat  16417100  Previous    Next  AGI:  At1g43590.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34838.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912) Range:  from: 16416561    to: 16417067    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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