Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->ARR14(2)    <---------ARR14(2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ------>MYB46(1)                                             <------MYB83   ------>MYB83                     <---------At4g35610        <------MYB46(1) ----HSFB2a(2)                --------->ZAT2                  <---------AtMYB61 --->HSFB2a(2)                <---------ZAT2                  <---------------AtSPL3     <---------ZAT18 ----HSFC1(1)                --------->MYB52(1)    <-----------HVH21<---------ZAT6     --------->At4g35610 --->HSFC1(1)         --------->At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->YAB1   -   gaaccaaatccagtttcagacatcagtagcccaactggagatgtccgagacctggtcatttgggatggtactgttgataactcactaatagctcacattg  16332800                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                   --------->ICU4     xxxxxxxxxxxxxxx                                                                   <---------YAB1     --------->ZAT14                                                                 <---------ICU4       <---------ZAT14                                                                 --------->YAB1    <---------ANAC46                                                           --------->ANAC58       <------------------                 ---------->DOF2                           --------->ANAC58      --------->ZAT18            ----------->GT1                              ---------->DOF2--------->AHL20(2)        --------->At4g35610        ---------->DOF2     <---------ZAT6   <---------AHL20(2)        <---------At4g35610--------->ARR14(2)     --------->YAB1<---------ATHB12 --------->ZAT14 -------->ARR11(3)         <---------ARR14(2)    <---------YAB1 --------->ICU4   <---------ZAT14   --   aagaaattgaagctcagttaaaagatgaaaatccacaaaaagacgttgttgatgatagtgaaagcaatgatgattttaatgagttcagtgaagaagacga  16332900                                                                                                    -                                                                                                    =                                                                                        --------->ATHB12                                                                                       --------->ICU4                                                                                       <---------YAB1                                                                                     --------->YAB1==                                                                                 <---------MYB46(3)<-                                                                               <xxxxxxxxxxxxxxxxxxxxx                            <------ZmHOX2a(1)                                 <-------GAMYB       <--           --------->WOX13(1)                                                <---------ANAC58     --- ==================================HOX2a_HOX2a                               <---------ANAC46     <-- ------>ZmHOX2a(2)    --------->At4g35610                                    <---------ANAC58     <-- x>smallRNA(i)      <-----------RAV1(2)                                   --------->ALFIN1        --- -----TaNAC69(2)   ================HOX2a_HOX2a <---------ZAT14          <-----------RAV1(1)  <------- ------->ARR11(3)  <------ZmHOX2a(2)   <---------YAB1                  --------->GLK1(2)<---------ICU4   tgatccagactatcaatctggatcagaagaggatgaagatgatgatgtctggactgagaaagttttagacgagaatgtggcgttggatgatgatttcaca  16333000              <------MYB46(1)              ----------->GT1              <------MYB83             --------->MYB59             <---------------AtSPL8           <------ZmHOX2a(1) ----->ZmHOX2a(2)                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) =================HOX2a_HOX2a                                             <------MYB83 =================HOX2a_HOX2a                                             <---------MYB46(3) -----ZmHOX2a(2)                                                          <------MYB46(1) xxsmallRNA(fl3)                                                         <---------AtMYB61 -------ARR11(3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ARR14(2)                                                        <---------MYB52(1) -------ARR14(2)                                                       <-------GAMYB -------GLK1(2)                                                     ------>ZmHOX2a(1) ------>ARR11(3) <-------TEIL          <---------ANAC46        ------->GAMYB        ------->GAMYB ----GT1 <---------TOE2(3)    <-----------GT1       --------->ARR11(3)<-----------RAV1(1)         ---   gatccccctctaaggaaggtacaaaactatagttaccttcttcgtgaaatggatgattttgtcaaccctcctctgttggtagacaaccctcttctgtctc  16333100                                                                         ---------->DOF2                                                                      --------->TOE1(3)                                                                      --------->TOE2(3)                                                                  --------->ATERF1(1)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                 <---------At4g35610                                                                 <---------ATERF1(1)                                                                <---------ORA47(2)                                                                <---------ATERF1(1)                                                                ------>NtERF2                                                                <---------RAP2.3(1)                                                               <---------DEAR3(1)                                                               --------->ATERF1(2)                  -                                                     ---------->DOF2<------NtERF2                  *TSS                                               --------->YAB1  <---------ATERF1(2)          <--------                                          ------------>CBF  <xxxxxxxxxxxxxxxxsmallRNA(s)    <--------             <------ZmHOX2a(1)           ------>ZmHOX2a(1) <-----------RAV1(2)              <--------            ----------->GT1  ---------->DOF2<---------------AGL15--------->At4g35610        --------- --->ZmHOX2a(1)  ---------->DOF2         <---------------AGL15 <---------RAP2.3(2)      <------------CBF   ctatccaagttaagaggagaaaagtctcactaaaagagttgtcctccaattagaagaaagaacaggcggcagccttaaagagagggataacattgtgtga  16333200                                      --------->At5g28300                                 ----------->HVH21                              --------->ATHB12                             <---------YAB1 -------->AHL20(1)           <-------TEIL                                      ---------->DOF2 -ANAC58                   --------->YAB1                                 <----------DOF2           - -ANAC46             >>>>>>>>>>>>>>>>>LFY                                ------>ZmHOX2a(2)         <- -ANAC58      --------->ARR11(3)<---------WOX13(1)                     <---------ARR11(3)      <----- -->GT1<----------DOF2--------->MYB46(3)                               --------->ARR11(3) -----------   aatatatgactttgaagacattgaaccaatgttcattgacagtgactcacccgatttcagaggtcataacattgatctttctaaagaagacaatgttata  16333300                                                                      <-----------GT1                                                               --------->YAB1                                                               --------->AHL20(2)                                                              <---------ATHB12  <---------TOE2(3)                                         --------->WOX13(1) --------->DOF2                                           <---------ATHB12 --------AHL20(2)       <------ZmHOX2a(1)                --------->ANAC58                         <-- ----YAB1           --------->TOE2(2)                    --------->ANAC58                 <-------TEIL >GT1               --------->TOE1(2) <-----------HVH21 --------->WOX13(1)               --------->CCA1(2)   tttaaaggaagggtttttgaaaccaaggacgagttcaaagtgtcactgtctatttatgcaatcaatcaaatttttcggtttagtttgtgagatacaccaa  16333400                                                  --------->ANAC46                                             <---------SPL7                                            --------->ALFIN1                                         <---------MYB46(3)                                         --------->MYB55(2)                                        <---------ANAC58                                        <---------ANAC46                                        <---------ANAC58                                ---------->DOF2                             --------->CCA1(2)   <---------LBD16                       <------ZmHOX2a(1)                          --------->ANAC58<-------GAMYB             <---------------------WRI1                          --------->ANAC58<------NtERF2      <------MYB46(1)         --------->MYB59  --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ----------->GT1  <---------TOE2(1)  <--- -------ZAT6      --------->ALFIN1     <---------LBD16       <------MYB83     <---------TOE1(1)  <---   gtgttatcttgtagcacaatgtgttgacaagaaatgagactggcgggtgtacgcgcataagattggtgatatcgatgagtacgaggttaggaaagtgaag  16333500                                               <---------ALFIN1                                            --------->ANAC46                                            <-----------GT1                                         <---------ARR14(2)         <----------DOF2                                        ------>MYB83     --------->ARR11(3)                      ----------->RAV1(2)--------->ARR14(2)         <---------DAG2                    <---------GLK1(1)   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                         ----           ----------->HVH21            ------>MYB46(1)  <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxx ------ANAC58 <---------ANAC46        <---------MYB59   --------->YAB1    <---------At5g28300  <----- ------ANAC58 <---------bZIP60(2)  <-----------GT1     <---------TOE2(3) <-----------GT1<xxxxxxxxxxxx   cttgagcatgtctgtgatgtggaaacctgaggtcaatttaccaaatacaccacttctaagataatcgctgctttattacggtcgaagtatgtcaatgtta  16333600                      -------->P                    ------>ZmHOX2a(2)                   --------->CCA1(2)                   <------ZmHOX2a(2)                  >>>>>>>>>GATA-4                  --------->ARR11(3)                  <---------ARR14(2)                  --------->ARR14(2)                  --------->AGP1                  <---------ARR11(3)                  <-----------ARR10                  >>>>>>>>>GATA-1        ---------->DOF2--------->ANAC46       --------->HSFB2a(2)                                                                       ----       ===================HOX2a_HOX2a                                                            <---       ------>ZmHOX2a(1)                                 <---------GLK1(2)          --------->ANAC58       <---------HSFB2a(2)                              <---------ZAT2              --------->ANAC58       ====================HOX2a_HOX2a                  <---------At4g35610    --------->ANAC58  ---- ----->REM1(1)    >>>>>>>>>GATA-3                       --------->At4g35610    --------->ANAC58  ---- x>smallRNA(se3)  >>>>>>>>>GATA-2                  ----------->HVH21 <---------GLK1(1)           <--- ------GT1       --------->GLK1(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      ---------- xxxxxxxxxxxsmallRNA(si3)    <---------ZAT2 --------->YAB1   <---------YAB1  ---------->DOF2     ----   caactggtcctagagcgagagatctaccccaagctgttttagacgagcataatgtgacagcttcttattggaaatgctggaaagccaaggaattggcaaa  16333700  Previous    Next  AGI:  At1g43280.1    Description:  transposable element gene. Mutator-like transposase family, has a 6.6e-47 P-value blast match to Q9ZQM3 /24-192 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 16333199    to: 16334942    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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