Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <----------DOF2                                                                             <---------ICU4                                                                         <---------AHL20(2)   --------->GLK1(1)                                                    <---------AHL20(2) <------ZmHOX2a(1)        >>>>>>>>>MYB98         ----------->GT1        --------->AHL20(2) >HSFB2a(2)           <----------DOF2         ---------->DOF2        --------->WOX13(1) <xxxxxxxxxxxx ------>AGL15         --------->TOE2(3)   --------->TOE2(3)    ---------->DOF2    <-----------GT1 -HSFB2a(2)           --------->TOE1(3)----------->RAV1(1)  --------->YAB1  <---------ATHB12     <---   ataggaattcaacatagtttcaaactttaacatacttgttgcaacataaaaaggaaatacaatcacaaagtcaattaaatcattttacttctttccaagt  16300400                                                                         ----------->GT1                                                                         <------MYB46(1)                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                  --------->ANAC58                             <---------ANAC58                     --------->ANAC58                 ------>ZmHOX2a(2)                             <---------At4g35610                <---------GLK1(1)                              <---------ZAT2               --------->ARR11(3)                              --------->ZAT2   <---------LBD16       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC58       <---------ANAC58            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ANAC58 ------->TEIL                   ------>ZmHOX2a(1)  <------MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ----------------------->TaNAC69(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            -- xxxxxxxxxxxsmallRNA(i2)  <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <------- ----TEIL      <---------ARR11(3)           <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxx   gcatccataagccttgtgatctctgcatctttcttgtccaagcggtctttgaggtcctcaatttcagcacggatttggttaatctggagacgattactat  16300500                                                                                           ------>MYB46(1)                                                                                           -------->P                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR11(3)                                                                                     <---------ARR14(2)                                       --------->ANAC58        --------->ANAC58      --------->ARR14(2)               <---------ANAC58        --------->ANAC46        --------->ANAC58      --------->ARR11(3)      <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ANAC58      ---------->DOF2 <---------At4g35610 ------->At4g35610                  --------->ZAT2       --------->AtLEC2    --------->At4g35610 --YAB1        <---------ANAC58<---------ANAC58    <---------MYB46(3)      <---------ZAT14 ------>MYB83 xxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58  <---------MYB52(1)        --------->ZAT14<---------ALFIN1   cacctccaaatttgaatgcgttttgaatcaattccctgtgctcgccaaatcgtttgtcgatgcaaaagcactgctcgtgaactgcaagatcccaaccctt  16300600                 <---------ICU4              --------->YAB1             <---------YAB1           --------->YAB1           <---------ICU4          --------->ICU4          <---------YAB1        <---------ICU4        --------->YAB1       --------->ICU4        --------->At4g35610       <---------YAB1        <---------At4g35610  --------->ANAC46  <---------WRKY18(1)             <----------DOF2  --------->ANAC55(2)      --------->YAB1     <---------ARR11(3)                  --------->WRKY18(1)  <---------ANAC55(2)     <---------ATHB12    --------->ARR11(3)            <---------REM1(2)   gtctacgtgataattatcatcttgaccactcatcagacatttgagaaatgtcttcttttaatcgccaataagacgctctacaaggtcaagctgtttacca  16300700                                                            ------>ZmHOX2a(1)                                                       --------->KAN4(2)                                                      =============HOX2a_HOX2a                                                      --------->HSFB2a(1)                                                      <---------HSFC1(2)                                                      ------>ZmHOX2a(2)                                                      <---------HSFB2a(1)                                                      --------->HSFC1(2)                                                     ==============HOX2a_HOX2a                                                     <------ZmHOX2a(2)                                                    <---------ARR14(2)                                             ======================HOX2a_HOX2a                                             <------ZmHOX2a(2)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ARR14(2)    ----------->HVH21       *TSS          <---------LBD16                   <---------ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->CCA1(2)                    --------->ARR11(3) --------->At4g35610             ------      <---------GLK1(2)                    <------ZmHOX2a(1)<---------At4g35610  --------->AHL20(2)      <---------ARR14(2)                   ==================HOX2a_HOX2a  <----------ID1       ------      --------->ARR14(2) <-----------GT1   =================HOX2a_HOX2a ----------->GT1       -------   caaaaacagatttggggaacaccaaaatcaccatcgtacttggaaggatcatcggatcgttcctctgatgaagaaggtgacaaataactaagtggcatta  16300800                                                                                <---------TOE2(3)                                                                            <----------DOF2                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         --------->ARR11(3)                                                                         --------->AGP1                                                                         <---------ARR11(3)                                                                         --------->ARR14(2)                                 ----------->GT1        ==========================HOX2a_HOX2a                                ----------->GT1         =========================HOX2a_HOX2a --->ATHB12                  --------->DAG2             ------>ZmHOX2a(1)<---------AGP1          ---- --->ATHB51                ---------->DOF2       <---------AHL20(2)      <---------ARR14(2)      ---- -->ICU4                 --------->YAB1          --------->AHL20(2)     <---------CCA1(2)        ----   tttgctacatagccaaacacatgaaaatcaaaaggggataaattccaaaatataaatcctaacatccaaaccctagatctttaagaaaattcaaaatcca  16300900                                                                                        --------->AHL20(2)                     --------->MYB52(1)                                                 <---------AHL20(2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  --------->AHL20(2)                 --------->YAB1                   --------->ICU4                       <---------AHL20(2)     <---------ARR11(3)                           <---------YAB1                       <---------AHL20(1)     --------->ARR11(3)--------->ANAC46         --------->YAB1                         --------->AHL20(1) -->MYB46(1)    <---------YAB1                  --------->TOE1(3)                --------->TOE2(3) -->MYB83       <-----------------AGL1          --------->TOE2(3)                --------->TOE1(3)--- ---->P       --------->YAB1           <----------DOF2--------->AHL20(2)   --------->YAB1   <--------   acccctagatatcaaattatcataaacggcaactctaattcctttgcaaaccataattcaatagaattgggagaaaatcaaaaccctaatttattttcta  16301000                                                               <---------HSFB2a(1)                                                               <---------HSFC1(2)                                                               <---------MYB46(3)                                                               --------->HSFB2a(1)                                                               --------->HSFC1(2)                                                           <---------DEAR3(1)                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                          --------->At4g35610                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <---------LBD16                                                          <---------At4g35610                                                          --------->ATERF1(1)                                                          <------NtERF2                                                         <---------DEAR3(2)                 <-------TEIL                                                         ------>NtERF2                     <---------ARR14(2)                                                         <---------ORA47(2)              <---------HSFB2a(1)                                                         <---------ATERF1(1)             --------->HSFC1(2)                                                         <---------RAP2.3(1)             <---------MYB46(3)                                                         <---------ERF1                  --------->HSFB2a(1)                                                        <---------DEAR4(1)               <---------HSFC1(2)                                                        <---------At1g77200             <---------AtMYB61                                                 <-------TEIL<------NtERF2          --------->ATERF1(1)                                                --------->CCA1(2)                   <------NtERF2                                                --------->ARR14(1)                  <---------LBD16                                               <---------GLK1(2)                    --------->At4g35610                                             ----------->ARR10<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------At4g35610                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ORA47(2)                                     --------->At4g35610<---------DEAR3(1)         <---------ERF1                                     <---------At4g35610<---------DREB2C(2)        <---------RAP2.3(1)                                    <---------MYB46(3)  <---------RAP2.3(3)       <---------DEAR4(1)                                  --------->At4g35610  <------NtERF2              <---------RRTF1(2)                                  <---------ZAT2--------->GLK1(2)                 <---------RRTF1(3)                                  <-------GAMYB--------->ARR11(1)                 --------->ETT(1)                                  <---------At4g35610  --------->ATERF1(1)        <---------DREB2C(2)                                  --------->ATERF1(1) <---------SPL7              <---------At1g77200                                  <------NtERF2<---------ARR14(2)                 <---------DEAR3(1)                                 <---------RAP2.3(1)  ------>NtERF2  <---------MYB52(1)<------NtERF2                                 <---------ERF1--------->ARR14(2)  <---------MYB46(3) <xxxxxxxxxxxxxx                                 ------>NtERF2<---------HSFB2a(1)  --------->MYB52(2)<---------DEAR3(1)                                <---------RAP2.6(2)   <-----------HVH21           <---------RAP2.3(3)     --------->LBD16            <---------RAP2.3(2)   <---------ATERF1(1)    <---------ANAC58  ------    --------->ANAC58            <---------DEAR3(1)<---------DEAR3(1)<-------GAMYB <---------RAP2.6(2)    --------->ANAC58            <---------RAP2.3(3)  --------->DEAR3(1)      <---------ANAC58--------    --------->ANAC46           --------->RAP2.6(3)<xxxxxxxxxxxxxxxxsmallRNA(i)    <---------RAP2.3(2) -------->P -------->P      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AtMYB61  <---------ORA47(1) ------>MYB46(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-------TEIL <-----------RAV1(1) ------>MYB83  --------->WOX13(1)<---------ATERF1(1)xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21<--- ------>MYB46(3)  --------->AHL20(2)----------->HVH21<---------DEAR3(1) <-----------RAV1(1)--------->ARR14(2) ---GT1<-----------ARR10    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)-   tccaacccgaaacttaccaattaacttggacaaggcggctgatgcgaaagattcggcgtcggcggaggttcgttgtgttgtttgtcggcggaggttcgtc  16301100                                                                                            ---------                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------AHL20(2) xxsmallRNA(i)                          ---------->DOF2               ----------->GT1--------->AHL20(2) ---->ID1                       --------->HSFB2a(2)           ---------->DOF2        <---------AHL20(2) ->MYB52(2)                <---------DAG2                 ---------->DOF2      ----------->GT1 --------HVH21<------ZmHOX2a(1) <---------HSFB2a(2) ----------->GT1 ----------->GT1  <---------AHL20(1) --------->DOF2            <----------DOF2         ------------------------>ANAC81   --------->AHL20(1)   gtcaaagaagagagaaggagagaagaaaacttttcgagagaagaaaggagaagaaggaaataaagaaagagagagaaaaatttgtaatttaatgagatga  16301200                                                         <---------ZAT6                                                         <---------ANAC46                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  --------->ANAC58                                                  --------->ANAC58                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                            <---------ZAT6               --------->ICU4                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)--------->YAB1                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------YAB1                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->YAB1                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ICU4                               <---------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ----------->GT1                               <---------ZAT6 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ANAC58                   -                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)               <--                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)       ----------->GT1                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i) --------->YAB1 <xx             <xxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC46     --------->ANAC58  xxxxxxxxxxxxxxxxxx   <---------RVE1(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1   --------->DAG2   <---------CCA1(1)     <-------TEIL   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <---------YAB1        <--  <---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ANAC46 <---------YAB1 <---  <---------GLK1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<x  --------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<--- >At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------->DOF2   gaaagattttttgaattgaaattgaaatacatagtgtgaacacatagtgtgaacgcatagtgtgaacacacaatagttattatgataataaaagtgaaat  16301300  Previous    Next  AGI:  At1g43230.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1) Range:  from: 16300385    to: 16300798    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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