Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->LBD16                 ------>NtERF2                --------->ANAC46             --------->GLK1(2)                                                                    ---             --------->ARR14(2)                                                              <<<<<<<<            <---------GLK1(2)                                                                <<<<<<<<            --------->ARR14(2)                                                               <<<<<<<<            <---------ARR14(2)                                                               <<<<<<<<           --------->HSFB2a(1)                                                              <--------           <---------HSFB2a(1)                                                      <---------ATHB12           --------->HSFC1(2)        ---------->DOF2                              --------->WOX13(1)           <---------HSFC1(2) --------->TOE1(3)                                 <---------ATHB12-----    --------------------->WRI1--------->TOE2(3)                       <------ZmHOX2a(1)    <---------    <----------DOF2          ----------->RAV1(2)                --------->ZAT6--------->WOX13(1)<----   gaacgactttggaagattccgccattacaaaacctgaaacaaagacaaacccattaaactaaattgacagtaggacacatcaatcaatcaatttttcccg  16280700 -------->HVH21 <<E2Fa <<E2Fc                                                                                  <---------ATHB12 <<E2Fe                                                                         ----------->HVH21 <<E2Fd                                                                 --------->ARR11(3) ---GT1            <---------DAG2                     --------->At4g35610--------->GLK1(1) ---->At4g35610    <----------DOF2                 <-------TEIL         <---------ARR11(3) --GT1 --------->YAB1                      --------->ARR11(3)       ---------->DOF2--------->ZAT6 -----At4g35610 <---------ALFIN1       ---------->DOF2<---------At4g35610<---------GLK1(1)--------->YAB1   ctcacagaatcaaaatcaacactttttcaatttctaaattcaaaagaactagattcagaagaaacaaaaaaaaagatttcccttgacactaatcaaaaca  16280800             ----------->RAV1(1)             <<<<<<<<<<<<<<<<<LFY       <---------ATHB12                                                                <---------ARR14(2)     --------->WOX13(1)                      <---------ATHB12 <---------AHL20(2)       --------->ARR14(2)  --------->TOE2(3)                  <------ZmHOX2a(1) <XXXXXXXXXXXXXXXXXXXXXMIR447A/B <---------GLK1(2) --------->YAB1                ----------->HVH21  ----------->GT1               <------ZmHOX2a(1)   caaacatcaatcaaacaacattggaagaaatcgatgacaggaatcgaatcaagggataaaacattttatctccaaatcgctaggaaacagatactcagag  16280900                                      <---------ANAC58                                      ----------->RAV1(2)                                      <---------ANAC58                                  <---------ANAC58                                  <---------ANAC58                                       <---------ZAT14                            --------->GLK1(2)                                           --------->ALFIN1                           <---------ARR11(3)                                  --------->GLK1(2)                           <---------GLK1(2)                  ---------->DOF2  --------->ARR14(2)                           --------->ARR11(3)      ---------->DOF2             <---------ARR14(2)                          <---------RVE1(1)    <----------ID1<------ZmHOX2a(1)<---------GLK1(2)   acagagatgaaaacagacagagagacagagattttggcttgcctgagagaagacaaagagagaggaaagagagagagagagaatctgagagtgtagatcg  16281000                                                                  --------->ZAT6                                                                <-----------GT1                       --------->CCA1(2)                        *TSS             <-----------GT1                <---------ANAC58                             <----------DOF2    <---------AHL20(2)                <---------ANAC58                       <<<<<<<<<WRKY18<---------ARR14(2)         ---------->DOF2                             <-----------HVH21--------->ARR14(2)   aaggaaggaaggaaaggagcttgagatttgagagggtctctcgtctatgtctcgtcgtcaatgctttaaccctatctactaatttatcttatactatcga  16281100               <---------ANAC58               <---------ANAC58        <---------ALFIN1 <-----------GT1    --------->YAB1       -----          <----------DOF2     <----------DOF2   <-----------GT1  <---------ANAC58           <--------     <-----------GT1      ---------->ID1    <---------DAG2       <---------ANAC58         --------->ATHB12   <-----------GT1        <---------CCA1(2) <----------DOF2   <----------DOF2            <---------YAB1   gtttttttctctctttttcgtgcctcttgtctcttttagccaaacccttttttcattttttcaactttcgttcacaataactatataggctctgattgca  16281200                                                                           -------->ATHB1                                                                           <--------HAHB4                                                                           --------->YAB1                                                                           <---------ICU4                                                                           <---------AHL20(2)                                                                           --------->ATHB51                                                                           --------->AHL20(2)                                                                          <---------ATHB51                                                                 --------->AHL20(2)                           <---------AHL20(2)                 --------->YAB1                          <---------AHL20(2)                  --------->AHL20(2)   <---------TOE2(3)<                          --------->AHL20(2)              <---------AHL20(2)      ---------->DOF2  -- ------>RAV1(1)     --------->HSFB2a(2)                   --------->AHL20(2) <---------YAB1 --------- -WOX13(1)       <----------DOF2        --------->YAB1 --------->AHL20(2) --------->ICU4   <---------YAB1   acattgcataatagtataacttttagaataaaatttgttgaatgaaaacttgcagaataaaaaattataaaatacaattatttttaaagtatgttgatta  16281300                                                       --------------->AGL15                                 <---------TOE2(3)     <---------------AGL15                                 ----------->GT1      --------->TOE2(3)                           --------->ARR11(3)         --------->ANAC55(2)                           <---------ARR11(3)       <---------YAB1                         ----------                           <---------AHL20(2)     --------->YAB1                        --------->YAB1        --------->HSFB2a(2)--------->AHL20(2)    <---------YAB1                       <---------AHL20(2)        <---------HSFB2a(2)<---------AHL20(1)  <-----------GT1                        --------->AHL20(2)       <---------LBD16     --------->AHL20(1) <---------AHL20(2)      <---------TOE2(3)<---------YAB1 -------TEIL          <---------AHL20(2)  <---------AHL20(2)    --------->AHL20(2)   --------->YAB1 ------->CCA1(2)      --------->AHL20(2)<---------AHL20(2)    ----------->GT1   <---------ATHB12 >ATHB12--------->HSFC1(1)--------->AHL20(2)  <---------YAB1---------->DOF2  <---------AHL20(2)   gatacattttccagaatgacagaataaaatatattaagttatattttttttattatacttaataaagaaaataatgtttttaatcaattttaataaagtc  16281400                                                ----------->GT1                                       <---------YAB1                               <---------AHL20(2)                                    --------->AHL20(1)                          --------->YAB1                                    <---------AHL20(1)                        <---------TOE2(3)                                    <---------AHL20(2)                       --------->YAB1                               --------->AHL20(2)                          <---------YAB1                               <---------AHL20(2)                       --------->AHL20(2)                              --------->YAB1--------->DAG2              <---------AHL20(2)               --------->AHL20(2)   --------->AHL20(2)                  <---------YAB1            --------->YAB1   <---------YAB1---------->DOF2           <---------AHL20(1)             -    --------->ICU4     <---------TOE2(3) <---------AHL20(2)          --------->AHL20(1)           <-- >DOF2     <---------YAB1 <---------YAB1--------->AHL20(2)          <---------AHL20(2)        -------   taagtaatatttgatgataaaatataagattattaaaatttattaaaaagttgtgaaaatgttttcttatatatattattaatgatataatttctatgtt  16281500                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                   --------->AHL20(2)                                                                   <---------AHL20(2)                                                               --------->AHL20(2)                      <---------ICU4                       --------->AHL20(2)     <---------YAB1   --------->ATHB51                     --------->AHL20(1)  <---------AHL20(2)     <---------AHL20(2) <---------WOX13(1)                 <---------AHL20(1)  --------->YAB1   --------->YAB1    <---------YAB1                        <---------AHL20(2)  --------->AHL20(2) -------->TOE2(3)    <---------AHL20(2)              <-----------GT1     --------->ANAC46  <---------AHL20(2) -------TOE2(3)    --------->YAB1          --------->REM1(2)  <---------YAB1--------->WOX13(1) -->YAB1        <----------DOF2 <---------ICU4    --------->YAB1<---------AHL20(2)  <-----------GT1 -   aacatttataattgttttcttttataattgctaatatttagtatgtgtagaatattaacaatttattatataaataagcaattatataactatttttttg  16281600  Previous    Next  AGI:  At1g43190.1    Description:  polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative. Identical to Polypyrimidine tract-binding protein homolog 3 [Arabidopsis Thaliana] (GB:Q6ICX4); similar to PTB (POLYPYRIMIDINE TRACT-BINDING), RNA binding [Arabidopsis thaliana] (TAIR:AT3G01150.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82466.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43610.1); similar to polypyrimidine track-binding protein homologue [Cicer arietinum] (GB:CAD70621.1); contains InterPro domain HnRNP-L/PTB/hephaestus splicing factor; (InterPro:IPR006536); contains InterPro domain RNA recognit Range:  from: 16277548    to: 16281064    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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