Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------YAB1                                                                          ------     --------->YAB1                                                               <----------DOF2    <---------YAB1                                                         <-----------RAV1(1) ------  --------->YAB1                       <---------ZAT14                     <---------MYB46(3)  ------ <---------YAB1                        --------->ZAT14                   <---------At4g35610 <------- --------CCA1(2)                       --------->ZAT18              <---------ARR14(2) <----------DOF2 -----GT1      --------->YAB1   <----------DOF2   --------->TOE1(2) --------->ARR14(2) --------------   catatcattataagtaaacataatgaaatttttgcttcaagtgaactgtgaacatgtgagtgtgttatcggatttagctgttgtcttttctttttatacg  16268800       <---------AHL20(2)       --------->AHL20(2) --->ANAC58                                                                                         - --->ANAC58                 <---------------AtSPL8                                          --------- --->ANAC46       <----------DOF2             <----------DOF2 --------->YAB1              <---------- ----GT1         --------->TOE2(3)     ----------->RAV1(2)   <---------ATHB12          --------->ARR14(2) ->AGL15--------->AHL20(2)  --------------->AtSPL8   --------->MYB59     ------>NtERF2 <---------ARR14(2)   aaacaaaaaataaataaaacctttatcaaatttgtacaaacctctgggctttatttaggcccaataacaaaattcggcccatatttgagaattcacaaaa  16268900               --------->AHL20(2)                            <---------AHL20(2)            <---------------AGL15                            <---------YAB1            --------------->AGL15                           <---------AHL20(1)                     <-           <---------YAB1                                 <---------YAB1                           <-           ==========================================================================================  <---------ARR11(3)                             <---------At5g28300                          -------  --------->ARR14(2)                            <-----------GT1                               <------  <---------ARR14(2)                        <---------AHL20(1)                               <-------  <---------GLK1(2)        --------->ATHB12 --------->AHL20(1)                              <-------- ---------->ARR10         <---------YAB1    <---------AHL20(2)        --------->ANAC46<----------DOF2 >ANAC46   ----------------->AGL3           --------->AHL20(2)--------->AHL20(2)   <---------ARR11(3) -GT1      <-----------------AGL3 ------>ZmHOX2a(2)  ----------->GT1<-----------GT1--------->ARR11(3)   cctagatactcttactataaattggaacatcattgatctaatacaattaattactgtgttaatattatttatactcaatctgaaatgtctttttttagct  16269000 ----------->RAV1(1)    --------->ANAC46 --------ETT(2)         <---------ANAC55(2) --------ZAT18          --------->ANAC58 =========================MADS_MADS  --------->AHL20(2) -->At4g35610           --------->ANAC58  ---------->DOF2 ---At4g35610           --------->ANAC55(2)                       ----------->GT1     <----------DOF2 ----GT1     <---------ATHB12       <---------AHL20(2) <----------DOF2        <-----------RAV1(1) ---GT1   <---------------AGL15     --------->AHL20(2)--------->TOE2(3)       <---------MYB46(3)   gtccaccagtttccaatctttgaaatacgaaacaaaaaataaataaaagtataaaacctttatctaatttgtaaaaacatttgttgggctttaggcccaa  16269100                                                  --------->AHL20(2)                   <---------ANAC58  --------->ARR14(2)                   <---------ANAC58  <---------ARR14(2)        <------NtERF2<---------ZAT6  <---------ARR11(3)       <---------DEAR3(2)            <---------GLK1(2)      <---------DEAR3(1)   --------->ANAC46      ----------->TBP             <---------CCA1(2)     --------->RAP2.6(3)--------->ZAT18       <---------YAB1  <---------TOE2(3)                   --- ---------->DOF2   <---------ANAC46----------->ARR10        *TSS     ---------->DOF2          ------>ZmHOX2a(1)   aacaaaagtcggcccatatttgagtgttcacaaaacctagatactcttactataaattcaaactagggttttaaagctcatttctctcttgcagtcctca  16269200                    <------NtERF2                                                          --------->TOE2(3)                   ------>NtERF2                                                           --------->TOE1(3)                   <---------DEAR3(2)                                                    ------->TEIL                  <---------DEAR3(1)                                                     -------->P--                 <------NtERF2                                 --------->LBD16       <---------ARR11(3)                 --------->ATERF1(1)                          <---------ANAC58       <---------ARR14(2)                <-----------HVH21                             <---------ANAC58       --------->ARR14(2)                <---------ATERF1(1)                           <---------ANAC46      <---------CCA1(2)     --------->At4g35610     <-------TEIL   <<<<<<<<<NAM  <----------DOF2          ------->TEIL <----     <---------At4g35610  <---------HSFB2a(1)  <----------DOF2<---------AtLEC2  ----------->GT1 <---- ------>ATHB12 --------->DEAR3(1) <----------DOF2   ------>ZmHOX2a(1) <-----------GT1--------->ARR11(3)   tcgttggagcttagaagccgtcggcacaaggttcgtctttctctcatccctttcctcttcctttgcgtgaattcaccagaaaatgtatatctaccttagc  16269300                                 --------->LBD16                                <---------HSFB2a(2)                                --------->ANAC46                                --------->HSFB2a(2)                       <------ZmHOX2a(1)                       --------->YAB1                   --------->TOE1(2)                 <---------ARR11(1)                 <-----------ARR10                 --------->GLK1(2)                 ------->TEIL  <---------LBD16      <---------YAB1         <----------DOF2 ------->GLK1(2) --------->ARR14(2)               <---------ICU4  ------>ZmHOX2a(2)               <-- -----ANAC58     <---------ARR14(2)       <----------DOF2        <---------GLK1(1)        <---------MYB46(3) -----ANAC58    <---------ARR14(1) --------->SPL7 --------->YAB1--------->ARR11(3)     <-----------RAV1(1)   gagtctgtctagtttagcgaatctaggataatctccggaagacacttttgaatcatcactgtttttgatctctgtttctttctctaattgtgttgttgta  16269400                                                       --------->ANAC46                          ----                                                       --------->ANAC58                          ----                                                       --------->ANAC58                         <----                                                   --------->ANAC58                             -----                                                   --------->ANAC58                           -------       <---------REM1(1)                        --------->At4g35610                        --------->At4g35610      <---------TOE2(3) >>>>>>>>>TBF1           <---------ZAT18                            <---------At4g35610 <---------ZAT6   >>>>>>>>>TBF1                 <---------At4g35610               --------->ANAC58 -- <-----------RAV1(1) >>>>>>>>>TBF1     <------ZmHOX2a(1)                          --------->ANAC58<-- ---------GT1  >>>>>>>>>TBF1     ----------->HVH21 --------->ANAC46               --------->ANAC46<--   ttactgttgatgtagaagaagaagaagaagaatgtctcacaggaagtttgagcacccaagacatggttctcttggtttccttccaaggaagagagctaac  16269500        ---------->DOF2                               -------->HAHB4       <------ZmHOX2a(1)                              <---------ICU4 --->GAMYB                                            --------->YAB1 ----->ANAC46                                         --------->ATHB12 --------AtMYB77                                     <---------ATHB12       <---------GLK1(2) ---->MYB46(3)                                       <---------YAB1      --------->DAG2 -->MYB52(1)                            <---------ANAC58                ---------->DOF2    <---------ZAT18 --------->HVH21                        <---------ANAC58             --------->YAB1      <---------At4g35610 ---------HVH21                         <---------ANAC46      <---------TOE2(3)     <---------DAG2 ---------TGA1      <----------DOF2 <---------GLK1(2)--------->ICU4 <---------YAB1  <----------DOF2   cgtcacagaggaaagggtgagtctttttatcaaatgtagattccttgttagtgaaatgattactagggttttcataaagcttctctctttttgctcactc  16269600                                                                                                    -                                                                                                   --                                                                                     <-----------RAV1(1)                                  --------->ATHB12                        <----------DOF2      <-----                                <--------P                <---------AHL20(2)         <---------MYB46(3)                                <---------WOX13(1)      <----------DOF2  <---------ANAC58<---------MYB46(3)                              --------->ATHB12     <---------MYB46(3)    <---------ANAC58<------MYB83                              ----------->GT1  --------->DAG2            <---------ANAC46<------MYB46(1)   acaaatattgaattcttaagtagtgaatgaaatggttgatttgattcaaaaggttgttcttttattgtttgttttgcttatacgttgttgttggtttatc  16269700  Previous    Next  AGI:  At1g43170.1    Description:  ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome. Identical to 60S ribosomal protein L3-1 (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q93WD0); similar to ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G61580.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63848.1); similar to unknown [Populus trichocarpa] (GB:ABK92509.1); similar to unknown [Populus trichocarpa] (GB:ABK93633.1); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597); contains InterPro domain Translation elongation and initiation factors/Rib Range:  from: 16269160    to: 16271310    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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