Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <--------HAHB4                                            <---------ICU4                                            --------->YAB1                                    --------->At1g77200                                           <--                                    --------->DREB2C(2)                                           ---                                    ----------->HVH21                                             <--                                    ------->GAMYB                                                 ---                                    --------->DEAR3(1)                                           ----                                   --------->DEAR3(2)                                            ----                                   --------->MYB46(3)                                           <----                                 --------->AtMYB61                                              <----                <-----------GT1 <---------ABI4(2)                                               -----               <-----------GT1  --------->MYB46(3)    <-------TEIL                           --------       ------->TEIL      ---------->DOF2   <---------ATHB12   <---------------AtSPL8         --------   tcggacatgaactcattttaacttatctaaagagaccaccgacgaatcattttgggttcacaaaattgtacttcgatttctaagcctgaatgtgaacgca  16265900                  ------->MYC4                  ------->MYC3                                                         ------>MYB83 -----MYC2        <-------MYC4                                                         ------>MYB46(1) ---->MYC2        ------->MYC2                                                    >>>>>>>>>>WRKY6 -----MYC3        <-------MYC3                                                    >>>>>>>>>>WRKY26 ---->MYC3        <-------MYC2                                                    >>>>>>>>>>WRKY38 ----->ANAC58    <---------ANAC55(2)                                              >>>>>>>>>>WRKY43 ----->ANAC58    <---------O2                                                     >>>>>>>>>>WRKY11 -----TOE2(2)    --------->TGA1a                               <----------DOF2    <---------WRKY18(1) -----TOE1(2)    --------->ANAC55(2)       --------->YAB1<-----------GT1         --------->WRKY45 -->TEIL         <---------TGA1a       <-------TEIL  --------->ICU4              --------->WRKY12 ->ANAC58        --------->O2 <---------AHL20(2) --------->TOE2(3)               --------->WRKY38(1) ->ANAC58      <---------ALFIN1       --------->AtLEC2<---------ICU4   <----------DOF2----------->RAV1(1)   cgtttttgaatatttcaacacgtgtttcatatttcattacatgcattataacataaatattacatctttgagtctttaactagttgaccaacaaaaaaaa  16266000                                                                                  <---------ANAC58                                                                           --------->AHL20(1)                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                                                           <---------ARR11(3)                                                                           <---------AHL20(1)                                                                           --------->ARR11(3)                                                                       <---------YAB1                                                                     --------->YAB1  ----------->GT1                                                              --------->AHL20(2)  <-----------RAV1(1)               --------->STY1(2)                              <---------AHL20(2)  <---------ANAC58  -               <---------STY1(2)                          --------->AHL20(2)   <XXXXXXXXXXXXXXXXXXXXMIR171A          --------->ZAT6                              --------->AHL20(2)--------->YAB1           ----  --------->DOF5.7(2)                <---------AHL20(2)   <---------AHL20(2)<---------AHL20(2)  ----- <----------DOF2             --------------->AGL15    <---------AHL20(2)--------->AHL20(2)      <---- --------->TOE2(3)        <-----------GT1        ----------->GT1    --------->AHL20(2)        ------- --------->TOE1(3)     ----------->GT1        --------->MYB52(1)    <---------AHL20(2)      <--------   aaactttaactaagtctagctagttttgttactacatatataaaaacaaaaccgaaataaatatttaaaatttataatatatttgtgtggctaaatcaat  16266100                                                                 <-----------GT1                                                               <-----------HVH21                                                             <-------MYC2                                                             <-------PIF5                                                             ------->PIF5                                                             <-------MYC3                                                             ------->MYC2                                                             ------->MYC3                                                             ------->MYC4                                      <----------DOF2        <-------MYC4   <-----------HVH21               --------->ARR11(3)       <---------O2 <-------MYC3                      <---------ARR11(3)       --------->TGA1a ------->MYC3                     --------->GLK1(1)         <---------TGA1a >>>>>>>>>>BZIP12               <------ZmHOX2a(1)           >>>>>>>>>>HY5               ---------->DOF2 >>>>>>>>>>ABI5           <------MYB46(1)                   --------->O2        ------>NtERF2 -------->O2              <------MYB83================================bZIP_DOF <---------RAP2.6(2) ----->YAB1              --------->MYB59                    =======================================bZIP_DOF ---->MYB46(3)          ==============================================MYC_MYB --------->RAP2.6(3) -----ATHB12            <--------P<---------GLK1(1)         --------->ANAC55(2)<---------ANAC46 -->WOX13(1)<---------ARR11(3)--------->ANAC58             <---------TOE1(2)----------->HVH21 -ATHB12    --------->ARR11(3)--------->ANAC58            <---------ALFIN1<---------AtLEC2   caacgtgtcatgaaggtctaattcaagttggtaaggaaatcttttgtttatgtccatttcccacgtgtcactatttgtatgacggctagagaaagacatg  16266200                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                -----                               --------->ANAC58                                                 -----                           --------->ANAC46                                                    <-----                           --------->ANAC58                                                    ------                           --------->ANAC58                                                    ------                       ----------->TBP                 ----------->RAV1(1)                     <-----                 --------->LBD16                     *TSS                         --------->ANAC46---               <---------LBD16 --------->ANAC58    <------ZmHOX2a(1)    --------->ANAC46   <---------ANAC58    <-----------GT1  <-----------TBP            --------->CCA1(2)    <---------ZAT14       <---------ANAC58   --------->AHL20(2)--------->AHL20(2)    ---------->DOF2      <---------YAB1----------->RAV1(1)----   ttgaattaactagtgactccggattatataagcaagcatctactaaaaagataggaacaacacaatttgattacactgagcaacacaaaactggcgaacc  16266300         <---------TOE2(3)        --------->MYB52(1) --------TGA1a --------O2 ------->O2 ------->TGA1a --->MYB83 ---->TOE2(2) ---->TOE1(2)                                                                              --------->LBD16 ----MYB55(2)                                                                             --------->LBD16 --->DEAR3(2)                                                                            --------->LBD16 --->MYB46(3)                                                           --------->ANAC58 <---------LBD16 ----MYB52(2)       --------->LBD16    <---------ZAT14                  --------->ANAC58<---------LBD16 --->MYB46(1)     --------->DEAR3(2)   --------->ZAT14          --------->YAB1      <-----------GT1 ----->MYB52(1)  --------->MYB52(1)--------->ZAT6            --------->YAB1   <---------GLK1(2)  ----   aacgtgactctaacgaagaaaccggcaatggccagtatcactacaatgccgaagaaataacaagaatcataaacgagccagaatattatcccccgggtta  16266400                                                                            --------->At4g35610                                                                            =================RAV                                                                            <---------At4g35610                                                                            ----------->RAV1(2)                                                                         <------NtERF2             --------->LBD16                                           --------->ANAC46            --------->ANAC46                                       --------->HSFB2a(1)            --------->ANAC58                                       --------->HSFC1(2)            --------->ANAC58                                       <---------HSFC1(2)         --------->AtMYB61                                         <---------HSFB2a(1)         <-----         <---------ALFIN1                                         ------->TEIL               <-------        --------->MYB46(3)          <---------At4g35610           --------->ARR14(2)    <------------        <---------MYB55(2)          --------->At4g35610          ------>MYB83    ----------->RAV1(1)    ---------->ARF1          <---------ANAC46<-----------RAV1(1) ------>MYB46(1)--------->ANAC46 ----->REM1(1)          --------->YAB1      <---------TOE2(3)  <---------MYB59  ----------->HVH21   caacttgtctaccaccgcaatttcaaacatggtgtctatgctgactaatgttgtctctggtgagaccgaaccctcggcatctgcgacatggacgatgggt  16266500                                                      <---------ZAT2                                                      --------->At4g35610                                                      --------->ZAT2                                                   <-------TEIL                                                  --------->ARR14(2)                                         --------->ATHB12                                     --------->ATHB12 <---------At4g35610                                    <---------ATHB12<-----------RAV1(2)       ---------->DOF2              --------->MYB46(3)----------->RAV1(2)                          -- ------HVH21                    ------>ZmHOX2a(1) <-----------HVH21                               <-- --MYB46(3)                  ------>NtERF2   --------->MYB52(1) ------->TEIL                      --- ---------WRI1         <----------DOF2   --------->YAB1        <---------AtLEC2     <---------AHL20(2)   cataagagagaaagagaagagttttctttgcctcctcaaccattgattaccggttcagctggtatgcatgtttttctaaatcgaatttttttttgttgag  16266600          --------->MYB46(3)         -------->P   <---------ZAT14   --------->ZAT14                                         ---------->DOF2                         -- ------->ZAT6           <----------DOF2             ----------->GT1                ------>ZmHOX2a(1) -------ZAT14  --------->AHL20(2)              --------->AHL20(2)       --------->At4g35610      ---- ------>ZAT18 <---------ATHB12                 ---------->DOF2       ---------->DOF2      <----------ID1   aacactatactaaccaataaaacattctttaaccaaaaacaaaaatcaataaaacagtgactaaagaatgtgaaagctcaatgtccttggagaggccaaa  16266700                                                  <---------HSFB2a(2)                                                  --------->HSFB2a(2)                                                <-------TEIL                                               --------->GLK1(2)                                               --------->CCA1(2)                                              --------->ARR11(1)                                              --------->ARR14(2)                                              <---------ARR14(2)                                             --------->GLK1(1)                                             <---------GLK1(1)                                             <---------HSFB2a(1)                                             --------->HSFB2a(1)                                            ----------->ARR10                                           <------NtERF2                                          --------->LBD16                                         <---------DEAR3(1)                                         <---------ANAC46                                        --------->ATERF1(1)            <-------MYC2                                        <------NtERF2                  ------->MYC2                                        <---------LBD16                <-------MYC4                                        <---------At4g35610            ------->MYC3                                        <---------ABI4(1)              ------->MYC4                                        --------->At4g35610            <-------MYC3                                       ------>NtERF2                  <---------O2                                       <---------ATERF1(1)            --------->O2                                       <---------ORA47(2)             <--------ABF1                                       <---------ERF1--------->PCF2   <---------TGA1a                                       <---------RAP2.3(1)            <---------ANAC55(2)                                       <---------RRTF1(1)             --------->TGA1a                                       <---------DEAR4(2)             <---------ANAC46                                      <---------DREB2C(2)             --------->ANAC55(2)                                      <---------ATERF1(2)           <---------ALFIN1                <                                      <---------RAP2.6(2)          <------NtERF2                   --                                      <---------RAP2.3(2)         ------>NtERF2            <---------HSFB2a(2)                    ------->GAMYB     <---------RAP2.3(3)        ----------->HVH21     --------->KAN4(2)                   --------->MYB46(3) <---------RRTF1(3)  --------->ANAC46            --------->HSFB2a(1)        <------ZmHOX2a(1)             --------->ATERF1(2) --------->ANAC58            <---------HSFB2a(1)        <---------------AtSPL3        <---------DEAR3(1)  --------->ANAC58     <---------ANAC58  <--- ------->AHL20(2)  --------->DEAR3(1) <---------RRTF1(2)----------->RAV1(1)    <---------ANAC46  <--- ----->AHL20(2)    <---------MYB52(2)<---------ABI4(1)  <---------ALFIN1       <---------ANAC58  ----   aaaatatagaggagtaaggcaacgaccatggggaaaatgggcggcggagattcgagacccacacaaggcgacacgtgtatggcttgggacattcgagaca  16266800  Previous    Next  AGI:  At1g43160.1    Description:  RAP2.6 (related to AP2 6); DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO APETALA2 6 (RAP2-6) [Arabidopsis Thaliana] (GB:Q7G1L2;GB:O23108); similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G50080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43607.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471) Range:  from: 16266253    to: 16267258    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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