Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->AHL20(2)                                          <---------AHL20(2)                                          <---------ICU4                                          --------->YAB1                                          -------->ATHB1                                          -------->HAHB4                                     <-------                                          --------->ATHB51                                --------->AHL20(2)                                          <--------HAHB4                                  <---------AHL20(2)                                         --------->ICU4                                  <---------AHL20(1)                                   <------MYB46(1)                                       <---------AHL20(2)                                   <------MYB83                                          --------->AHL20(1)                                   ----------->GT1                                       --------->AHL20(2)                              <---------TOE2(3)      --------->AHL20(2)          ----------->GT1                              <---------YAB1<---------YAB1                   <---------ARR11(3)   >>>      <---------MYB59     --------->YAB1 <---------YAB1                      --------->ARR11(3)------ --------YAB1           <---------TOE2(3)<---------ATHB51           ----------->GT1 <---------AHL20(2)   tgtgaatgcctaattttgtatatgttaagaataagataggttaattattaaacaaaaaaatccatagaagttgataaaagatttagttaaatttaattgg  16217900                 --------->ARR11(3)             ----------------->AGL3            <---------ATHB12      <-----------GT1   <---------YAB1<---------ARR11(3)  --------->AHL20(2)                                                                              <--  <---------AHL20(1)                                                                              ---  --------->AHL20(1)                                      --------->YAB1                      -------  <---------AHL20(2)                                     <---------YAB1              <---------YAB1 --------->YAB1 <---------CCA1(2)             --------->AHL20(2)                     --------->AHL20(2) --WOX13(1)------>MYB46(1)                 <---------ARR11(3)                        <---------AHL20(2) >>>>>>GT-1------>MYB83   <---------ANAC46 --------->ARR11(3)  --------->YAB1     --------->AHL20(1) ----->GT1--------->WOX13(1)   ---------->DOF2<---------AHL20(2)          <-----------GT1   <--------   ttaatataataccaatccatatattgttatgtagaaagtcaagaagatttatatatactatcatatcaaaatgttttttcaacatatattattagattat  16218000                                                                                          <---------TOE2(3)                                                                                          <---------YAB1     ------->TEIL                                                             --------->AHL20(2) -------AHL20(2)                            --------->ANAC58                 --------->AHL20(2) ------>AHL20(2)                     ------->TEIL   <---------AHL20(2)       <---------AHL20(2) -->AHL20(2)                  <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(2) -GLK1(2)<---------YAB1<---------At4g35610  --------->ANAC58  ------------------------>ANAC81  ------   ttaaatgtattttgatattgagttgagcttatttcaatgtatttggaagccaatataaattgggaatcaacaaaactaaataaataactattaacattga  16218100                                                                   --------->SPL7                                                                 ----------->HVH21                                                  <---------HSFB2a(2)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <-----------HVH21             <---------ZAT18                      --------->HSFC1(1)            <---------ANAC46                      <---------HSFC1(1)           --------------->AtSPL8        <---------ANAC58    <---------ANAC58      --------->ARR11(3)    --------->ICU4 <---------MYB52(1)<---------ANAC58                   -----   --------->DAG2  <-------TEIL<---------YAB1     --------->HSFB2a(2)                         <------  ---------->DOF2 <<<<<<<<<<<<<<<<<LFY   <---------ANAC58    <---------ANAC46         <---------YAB1 --->ATHB12<---------------AtSPL8     <-----------GT1<<<<<<<ZML2 <---------SPL7  <---------AtMYB61   ttagaaaagttattgtgtacatacattggcattatcagtttttccgtctggtctagaaccatagcgtcggacgttgaaaacctttggtctgatagtcgga  16218200                       <----------ID1                                                        --------                   --------->ANAC58                                                         ---------                   --------->ANAC58                                                 <---------ARR14(2)     ----------->RAV1(1)                                                            --------->ARR14(2) ---->SPL7   <---------ATHB12    ---------->DOF2---------->DOF2                  <---------ANAC46 ---SPL7------->GAMYB---------->DOF2  <----------DOF2                   <----------DOF2     <--------   cgacttgcaacagcaatgaacaagaaagacaaacacaaagctttaaacgtagaagcgatggagaccatcttattcttttgtttgggtatatggagatata  16218300         ----------->GT1                                                  <-----------TBP         <---------ANAC46                                                 <---------AHL20(2)      --------->ALFIN1                                                    --------->AHL20(2)   --------->DAG2          <-----------TBP                          <<<<<<<<<GATA-1  --------->DAG2 --------->YAB1                      --------->ALFIN1   <-----------TBP ---------->DOF2 -------->HAHB4                --------->YAB1    <---------AHL20(2)               --- ->CCA1(2)      <---------YAB1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->GT1 ---- >ARR11(3)    --------->YAB1<---------YAB1------------>CBF  <---------TOE1(2)    <---------ZAT6 ----- -ARR11(3)   <---------AHL20(2)   <---------ZAT6     <---------ZAT6<-----------GT1              <----   acaaaaaggtgctgtttaataatagttgttcttatagtgtaagacacaatgagaagtgttcgcacattttatctatttatatagagttaacatgtctcaa  16218400                                                        <----------DOF2                                                   --------->ATERF1(1)                                                   <---------At4g35610    <------MYB46(1)                                                   <------NtERF2          <---------MYB46(3)                                                  <---------RAP2.3(1)     ----------->GT1                                                  ------>NtERF2         <---------WOX13(1)                                                  <---------ATERF1(1)  <------------CBF                                                 <---------RAP2.6(2)  --------->ATHB12                                          >>>>>>>>>>AGL22        --------->ARR11(3)          --------       ---------->DOF2                    >>>>>>>>>>AGL24       --------->YAB1               <-------   <-------GAMYB                          >>>>>>>>>>AGL20       -------->HAHB4             --------->YAB1  ----------->GT1              <---------MYB52(1)<---------RAP2.3(2) <---------YAB1       <---------YAB1  <---------ZAT6     <---------YAB1    --------------->AGL15   <---------YAB1    --------->ARR11(3) ---->GAMYB         <------------CBF   <---------------AGL15   --------->ICU4    <---------AHL20(1) ----->MYB46(3)    <---------ICU4     <-----------------AGL3 --------->YAB1  >>>>>>>>>GT-1--------->ICU4 ---->At4g35610   <---------YAB1      <-----------------AGL2<---------YAB1<------MYB83 <---------MYB52(1) -----At4g35610   --------->ICU4--------->ZAT14  <---------DEAR3(1)------>ZmHOX2a(2) <---------ZAT6   cagactgttaaaagcacttgattattgttatcagttaactactaaatatgggcggcttctttataatgatcgtgattggttaatatactgttatgatgat  16218500                                              --------->TOE2(3)                                              --------->YAB1           <---------TOE2(3)                                            <---------ARR11(3)         <---------YAB1                                            <-----------ARR10         --------->YAB1   <---------ANAC58                 ---------->DOF2                  XXXXXXXXXXXXXXXXXXXX>MIR844   <---------ANAC58                 --------->AHL20(2)     <---------GLK1(1)                <--------   <---------ANAC46     <-----------GT1     --------->GLK1(2)    ------------>CBF       ---------->ID1 ->ICU4                <---------AHL20(2)  <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-- --YAB1   <------------CBF       --------->TOE2(3)    <---------------ANT    <---------ANAC55(2) <---   tttttgagtgtatattgtttagtttttaatctcttcattaaaacagaatcttaattttgggaaatgtgccaataagattacctataatttgtttcttttt  16218600                                                                            <---------WOX13(1)                                                                         <---------YAB1             <              <---------AHL20(2)                                    <---------AHL20(2)              -             --------->AHL20(2)                                    <---------YAB1                   -             <---------AHL20(2)                    <----------DOF2<---------AHL20(2)             <--- --DOF2 <---------AHL20(2)                   <---------ICU4     <---------YAB1                   <--- -------AHL20(2)                             --------->ATHB12<---------AHL20(2)         --------->TOE2(3) ------AHL20(2)                             --------->ICU4   --------->AHL20(2)         <----------DOF2   ttaatgggttttaatttaaattgcataaaaccaaaatgttttcgaaatgatttctttgtggattttatttttattttgatggatactaaactttagtatt  16218700                                                                                                 ----                                                   --------->AHL20(2) <---------ANAC58 <---------ARR11(3)                                              --------->ICU4  --------->ANAC58         --------->ARR11(3)                                              <---------YAB1  --------->ANAC46         --------->ARR14(2)                                            <-----------GT1   --------->ANAC58         <-----------ARR10 ---------------AGL15                    --------->CCA1(2)    --------->ANAC55(1)      <---------ARR14(2) -------------->AGL15            <---------YAB1    <---------AHL20(2) <---------AtLEC2<---------CCA1(2) -------->TOE2(3)        --------->YAB1 <---------ARR11(3)  <---------ALFIN1        <---------ANAC58 --------GT1         <---------AHL20(2) --------->ARR11(3) <---------REM1(2)        <---------ANAC58 ------AHL20(2)     --------->ICU4--------->YAB1  --------->AHL20(2)  <---------ANAC58<---------GLK1(1)   tacattattttgtaaacttgtatttattcaaaattttcataagatataacgattaaattgctacacgcatttgcatgcctaaaattgcatatctccatta  16218800  Previous    Next  AGI:  At1g43080.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G43100.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G43090.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G40310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41851.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains Inte Range:  from: 16216435    to: 16218268    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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