Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                <---------YAB1                                                                              --------->AHL20(2)       <---------YAB1                                                     --------->AHL20(2)      --------->AHL20(2)                                                 --------->AHL20(2)  --------      <---------AHL20(2)               <----------DOF2                 <----------DOF2  --------->AHL20(2) -------->YAB1                  <---------ARR11(3)                    --------->TOE1(3) <---------AHL20(2) -----AHL20(2)  <------MYB46(1) --------->ARR11(3)                 <-----------GT1 <---------AHL20(2) ---->AHL20(2)  <------MYB83---------->DOF2                  <---------AHL20(2)<---------AHL20(2) -AHL20(2)     --------->MYB59----------->GT1                --------->AHL20(2)--------->AHL20(2)   < >AHL20(2)     --------->MYB111(1)     <---------DAG2  --------->YAB1 --------->TOE2(3)--------->AHL20(2)   aaacatatttttataagtaggtatgagaaaaaaagataatactttttcaattgtttattagaattatataaacctttaaattaaaattatttaataaaag  16191300                                        <-----------GT1                                     --------->ARR11(3)                                           <--                                     <---------ARR11(3)                                           ---                             <---------YAB1                                                       ---                          --------->AHL20(2)                     --------->DAG2                   ---                         --------->ARR11(3)                     <---------ZAT14                  ----                         <---------AHL20(1)      <---------AHL20(2)       <---------ICU4         ----                         <---------ARR11(3) ------>ZmHOX2a(1)   ---------->DOF2                  <---                         --------->AHL20(1)--------->TOE2(3)    --------->ZAT14                  <---                 --------->TOE1(3)   <---------GLK1(2)      <---------HSFB2a(2)                  <---  XXXXXXXXXXXXXXXXXXX>MIR773B*<---------AHL20(2)<---------AHL20(2)       --------->ICU4    --------->At5g28300 -->DOF2    --------->MYB46(3)--------->ATHB12  --------->AHL20(2)<---------ANAC46        ----------- ---------YAB1   --------->TOE2(3) <---------TOE2(3)        --------->HSFB2a(2)       <---------YAB1   ttacaataaactgaacaaaccttaaaaaatatttattgagattttccttattaattcgacttctagtaaagtgtaattgttactaagtatgatggtaaaa  16191400 -------ICU4 ------>ATHB51 ------>ATHB12 ----->ATHB1 ----->ICU4 ----->AHL20(1) ------AHL20(2)          <-----------GT1                   <---------ANAC58 ------ATHB51       <---------ARR11(3)                     <---------ANAC58 ------YAB1         <---------GLK1(2)                ------->TEIL          <----------DOF2 >GT1         --------->ZAT6      <-----------GT1 --------->AtLEC2<-------TEIL         --------->TOE2(3)   ttattggaagttgaaaacactagattttaaccattttaagcccttgtttttcatgcatttggcttagtttcatgtctcttttcatacattcttagtccat  16191500                                                                          <----------DOF2         ---                                                                          <---------DAG2          <--                                                                   --------->YAB1              ------                                                            --------->At4g35610              --------                                                            <---------At4g35610              <-------          <-----------GT1                                 <-----------RAV1(2)                <-------      <----------DOF2                                   <-----------GT1 ------->TEIL         --------   tttccttccttttcacattttgtattgcattgcatagcatacttacatttggagtgatttacaggtgaatcatgtacttttggatttaacttgggagttt  16191600                                                                --------->ARR14(2)              -----                                                                --------->ARR11(3)           --------                                                                <---------ARR14(2)           --------                                                                <-----------ARR10            --------                                                                <---------ARR11(3)        <---------ZAT18                                                          <---------LBD16                 --------->At4g35610           <---------ZAT14                           <---------ZAT18                 <---------------           --------->ZAT18                 <------ZmHOX2a(1)   <---------GLK1(1)     <---------At4g35610          --------->ALFIN1           --------->ANAC46--------->ZAT18             ==================== ------>HSFB2a(2)                    --------->ANAC58<---------ARR14(2)          <------ZmHOX2a(2) -------HSFB2a(2)                    --------->ANAC58<---------ZAT14            <---------ARR14(2) --->GLK1(2)                       --------->TOE1(2) --------->ZAT14     --------->At4g35610--------- ->HSFB2a(1)                     =================HOX2a_HOX2a  --------->GLK1(1)--------->ARR11(3) --HSFC1(2)--------->ZAT14       <------ZmHOX2a(2)*TSS   <---------LBD16 --------->ZAT2   --------->ZAT14 --HSFB2a(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ARR14(2)  <---------At4g35610<-------- ->HSFC1(2)<---------ZAT18   <---------ZAT18      <---------ANAC46       <---------ZAT2   <---------At4g35610   ctagcacaaggagtggactacctcgagtttgtgcgatccaaggaaggacatggagtatactcgggatatctactcggctggagatcgagcggagcacaca  16191700                                        --------->ZAT2                                        --------->At4g35610                                        <---------At4g35610                                        <---------ZAT2                                    --------->ALFIN1                         <---------ARR14(2)                               --------->At4g35610                         --------->ARR14(2)                 <------ZmHOX2a(1) --------->ATHB12 ---->MYB52(1)           <-----------ARR10     <---------AtMYB61       <---------HSFB2a(1) ->ANAC58             xxxxxxxxxxxxxxxx>smallRNA(s) <---------ZAT18     <---------HSFC1(2) ->ANAC58            ------>NtERF2--------->ZAT2   --------->ZAT18     --------->HSFB2a(1) ->ANAC46      <---------YAB1     <---------ZAT2   <---------ZAT14     --------->At4g35610 ------WRI1   --------->KAN4(2)   --------->At4g35610     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxx ================HOX2a_HOX2a      <---------At4g35610  ------->MYC3    <---------At4g35610      ----- >ZAT18   <------ZmHOX2a(1)       ----------->RAV1(2)  <-------MYC3    --------->HSFC1(2)    ------>NtERF2 -ZAT18  --------->ICU4 --------->WOX13(1)     --------->ALFIN1        <---------ZAT2<---------At4g35610   agggagaaggaaggattatactcggccaatctactcggctggagctcgagtggtgcacatgaggaagaagggaagctgctcgattgaagctactcggcct  16191800                                                                        <----------DOF2                                                                    --------->DEAR3(1)                                                                    --------->DREB2C(2)                                                                    --------->RRTF1(3)                                                                    --------->RAP2.3(2)                                                                    --------->RAP2.3(3)          <---                                                                   <------NtERF2             --------                                                                   --------->ATERF1(1)       <-------                                                                   --------->ORA47(2)       ---------                                                                   --------->RAP2.3(1)      ---------                                                                  <---------ATERF1(1)       <--------                                                                  ------>NtERF2             <--------                                                                 --------->DEAR3(1)         ---------                                                                --------->ATERF1(1)         ---------                                                                --------->At4g35610         ---------           ----------->HVH21                                    <---------At4g35610         <--------         <---------O2                                          <---------ATERF1(1)         <---------         <---------bZIP60(1)                                 <---------ZAT14               ----------         --------->bZIP60(1)                                 --------->ZAT14               <---------         <---------bZIP60(2)                ------>NtERF2   <---------REM1(1)              ----------       <---------ZAT14                 <---------REM1(2)    --------->ALFIN1              ---------->ID1     <---------------------WRI1      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)------>NtERF2        <---------- xxxxxxxxxxxxx>smallRNA(s)       <---------DAG2          <---------AtMYB61            <----------DOF2 ------>HVH21   ---------->DOF2  <----------DOF2         --------->ALFIN1           ---------->ID1   gaagccgagtgatgtgaccaaaggaggctactcgacttttctactcggccaagacccgagtggtgcagcgccgactttcccattttgtctttttcccaat  16191900 ------ICU4 ------->AGL15 --------AGL15 -------->AG                                                   --------->ETT(2) -------->AGL1                                            <----------DOF2 ---------AGL1                                           <---------ANAC58 -------AGL15                                            <---------ANAC58 -------->AGL2                                       <----------DOF2 ------>AGL15                                      <---------YAB1 -------->AGL3                                    <---------AHL20(1) ---------AGL2                                    --------->AHL20(1) --------AG                                       <---------ARR11(3) ------->AG                                      --------->RVE1(1) --------AGL1  <---------ANAC58                  --------->CCA1(1)                     <---------GLK1(1) ------->AGL1  <---------ANAC58  <---------TOE2(2)--------->ARR11(3)        <---------TOE2(3) -GT1  ------>ZmHOX2a(1)         <---------TOE1(2)<-----------ARR10   <---------ARR11(3)   <---------   tagggcatcctagtattgcctattaatagacctcttatgtttttgtccaaaatatctttgctttgtctactggatattagggttcttagatttcttttgc  16192000                    --------->GLK1(2)                    --------->ARR14(2)                    <---------ARR14(2)                                                       <-------             <---------At4g35610                                                          <---------GLK1(1)             --------->At4g35610                                                        <---------ICU4        <-------GAMYB                                                --------->ATHB12   --------->ATHB12       --------->MYB55(2)                                            --------->YAB1    <---------YAB1       <---------MYB46(3)                                         --------->WOX13(1)   --------->ICU4       --------->MYB111(2)                            --------->TOE2(3)              --------->YAB1 -DOF2<--------P   <---------GLK1(2)               <---------CCA1(2)<---------ATHB12<---------YAB1   attttctggttgttgtgctgagaatctgaatttcatttcttctgcatacttgtttatcttattgaaatctatcatttgctaagtttataatgatttctgg  16192100                                                                                      <---------AtMYB61                                                                                 <------MYB46(1)                                                                                 <------MYB83<-------                                                                                --------->MYB59                                                                              <---------MYB52(1)                                                                              <<<<<<<<<MYB98<--------                                                                        <------ZmHOX2a(1)   ---------                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <---------TOE2(3)<---------ANAC46                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------YAB1                  <---------YAB1               --------->ARR11(3)    <---------TOE2(3) --LBD16 <-----------GT1   --------->YAB1                      --------->GLK1(1)<---------AtMYB61----   gttttatgatttttctaaattttgttctatgatgtttttcattgttcttgagtagtcttcttcagagttcttgaggatgggttaggtttaggtggattcc  16192200  Previous    Next  AGI:  At1g43060.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.8e-196 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 16191650    to: 16206272    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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