Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <-----------HVH21                                       ------->GAMYB                                       --------->YAB1                                       --------->AtMYB61                                      --------->MYB46(3)                             --------->HSFB2a(1)                                 --------->ANAC46                                    <---------HSFC1(2)                                 --------->ANAC58            <---------WOX13(1)      --------->HSFC1(2)                                 --------->ANAC58          --------->ATHB12  <---------ANAC58                                <---------ZAT18           <---------YAB1     <---------ANAC58       <---------ATHB12         --------->ZAT18        ------------>ATHB5    <---------ANAC46 ---->ZmHOX2a(1)            ------->GAMYB             <----------DOF2  <-------TEIL  <---------HSFB2a(1)   cctaggcctatcaattccacaatatttcaacgagcacacaaccatcagcgaatgggctctatgattgctctggttcatagcgttggaaaattcttccttc  16045800                    --------->YAB1               ----------->RAV1(1)              --------->ANAC46            --------->ANAC46            --------->REM1(1)           --------->ZAT14           <---------ZAT14                                                             <---------DDF1         --------->ANAC46                                                              <---------RAP2.6(3)       --------->ZAT6                                                                  ------>NtERF2      --------->ZAT18                                                                 --------->RAP2.3(3)      --------->ZAT14  --------->AHL20(2)              <-----------GT1                <---------ETT(1)      <---------ZAT14  <---------AHL20(2)         <----------DOF2                   <---------ZAT18      <---------ZAT18  --------->YAB1         <----------DOF2                 <----------DOF2      <-   ttcaccagtacactacaccacataataatataaaaacaatgttgtcttctttcttttttagtctccaagtgtttgccattctttagtgccgacatcaagt  16045900                                                                                       <---------AHL20(2)                                                                             --------------->AtSPL8                                                                             <---------------AtSPL8                                                                           <---------ICU4                                                                           --------->ATHB12                                                                           --------->ATHB51                                                                          <---------YAB1                        <----------DOF2          <---------WOX13(1)       --------->ICU4     <-------                      ------->TEIL             --------->ATHB12         --------->YAB1--------->AHL20(2)             ---------->DOF2     <-----------HVH21     <----------DOF2 <---------ATHB12--------->AHL20(2) ---------DOF2    --------------->AtSPL8      <---------YAB1     <-----------GT1<-----------GT1   actttagtttgtcaccaaagaatgtactttagttttgtcaccacaaacttgattgttcttttcatttgaaccattcattattgtaccatttatttgcacc  16046000                                               <---------ARR14(2)                           ------->TEIL        --------->ARR14(2)                    <---------YAB1        ---------->DOF2                                      ------                  <---------AtLEC2--------->ANAC46             <----------DOF2          --------->ZAT6          <---------AHL20(2)   --------->ZAT18 --------->GLK1(2)                 --------->GLK1(2) ----GT1<----------DOF2    <---------------AtSPL8     --------->ZAT6           <---------AHL20(2)   attcactactcttttattttgtatgaatgaatgtacaccgaataaaaagaatccgaacactactcctttattgttctatatataatctgaacactacttc  16046100                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                          <-----------GT1                        <---                          <---------ATHB51               <-----------GT1                         <---                      ------------>CBF               --------->ICU4                              ----                     --------->YAB1   <----------DOF2<---------YAB1                             <----                <----------DOF2<-----------GT1     <---------ICU4              --------->YAB1  *TSS-- ------>CBF <----------DOF2--------->YAB1         <---------ATHB12      <----------DOF2        <-----   aatatttctatcaactttctttatcacaataataaacactcttttctatcaaatcatttttatctcttctctctctttctataattttgctaaaatggca  16046200   <<<<<<<<<TBF1 -------TEIL --------ARR11(3) --------ARR14(2) -------GLK1(2) ---MYB46(1) ------HSFB2a(1) ------HSFC1(2)                                                              <---------TOE1(3)   ---- ---MYB83                                                                    <---------YAB1      ---- ----->HSFB2a(1)                    --------->YAB1              --------->YAB1          ------>NtERF2 -----TOE1(2)           ------>NtERF2                         --------->ANAC58         --------->DEAR3(1) ------->ARR14(2)      --------->ANAC46                       --------->ANAC58--------->YAB1 <------- ------RAV1(2) --------->YAB1      <---------YAB1     <----------DOF2        <---------TOE2(3)-------   ggttcttcttcaaactataatctcgacgacatgttcgatgataagtttgatcaatgctttgatcaagcattagagagttatggtaatcgccaacgagtca  16046300                                                                                                  <--                                                                                              -------                                                                                           ------>ZmHOX2a(1)                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)      ----------->GT1                                                                 --------->GLK1(1)  --------->ANAC58                                                                    <---------CCA1(2)  --------->ANAC58                                                                    <---------GLK1(1) ----->ANAC58                                             <---------ZAT18         ----------->RAV1(1) ----->ANAC58                                             --------->ZAT18     --------->GLK1(2)   --- ----HVH21              ---------->DOF2              <---------ATHB12         <---------ARR14(2)  <-- -->WRKY18(1)  <----------DOF2            <-----------HVH21<---------DOF5.7(2)--------->ARR14(2) <---   agccaaggaagaaaaaactttatatcgaaagaaatcgtgaagaaggtcacatccaattagtgaacgactattttacagagaatccaacatatcctcccca  16046400           <---------DEAR3(2)        ------>NtERF2        <---------RAP2.3(1)       --------->ANAC46                                --------->GLK1(2)       <---------DEAR3(1)                             --------->ARR14(2)       --------->DEAR3(1)               <---------ANAC58 -------ARR14(2)                        <---------ANAC58                                         ---- -->LBD16<------NtERF2                  --------->ANAC55(2)                 <----------DOF2--------->CCA1(2) ------>ARR14(2)                        <---------ANAC46       <---------ATHB12    ---------->DOF2 -------ARR11(3)                     <XXXXXXXXXXXXXXXXXXXXMIR825            --------->TOE2(3)    ---- ------CCA1(2)              <---------ATHB12          <---------GLK1(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tatattccgacgccggtttagaatgaacaaatcgttgttcatgcgtattgttgagagattctccaatgaagtcccatactttaaacaaagaagagatgcc  16046500                                                                                <---------MYB46(3)                                                                               <--------P                                                                              <-------GAMYB                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <---------MYB46(3)                                                                            <---------RAP2.6(2)                                                                        --------->At4g35610                                                                        <---------At4g35610                                                                     --------->At4g35610                                                                     <---------At4g35610                                                                    <---------RAP2.3(1)                            xxxxxxxxxxxxxxxx>smallRNA(i)           <---------ANAC58                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ANAC46                       <---------ZAT14                             <---------RRTF1(2)                       --------->ZAT14                             <---------ANAC58                  <------NtERF2                 <---------TOE1(2)  <---------RAP2.6(2)                --------->ANAC46      --------->RAP2.6(2)          <---------RAP2.3(2)               <---------LBD16      --------->At4g35610           <---------LBD16  <---------YAB1 -->NtERF2 --------->ARR14(2)       <---------At4g35610   <-------MYC3 ----------->HVH21 ------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        ------->MYC3 <---------MYB46(3)   accagaagactcggtttctcggcactacagaagtctacagcagcaattcgtatgctcgcatatggtattgcggctgatgcggttgatgaatacctctgaa  16046600                                                                                               ------             <-------GAMYB                                           --------->GLK1(2)--------->ANAC46          ------->PIF5                                               <-----------ARR10--------->ANAC58          <-------PIF5                                     <---------HSFB2a(2)        --------->ANAC58         --------->ANAC58                                  <---------LBD16          <---------ALFIN1         --------->bZIP60(2)                  --------->YAB1         --------->ARR14(2)      <-------         --------->ANAC46                    <---------ATHB12        <---------ARR14(2)      --------         --------->ANAC58           --------->HSFB2a(2)    --------->HSFB2a(2)    ----------->RAV1(1)   ---------->DOF2  <---------YAB1  <---------HSFB2a(2)   <---------LBD16         <---------ALFIN1   ttggtgaaagcacgtcgttgttatgtttggaacattttgcagaagaaatcataaatctgttcggggatgagtatctaagaagacccacacgagatgatct  16046700  Previous    Next  AGI:  At1g42690.1    Description:  transposable element gene. pseudogene, similar to B, blastp match of 48% identity and 4.4e-72 P-value to GP|22830897|dbj|BAC15771.1||AB087616 B {Oryza sativa (japonica cultivar-group)} Range:  from: 16046195    to: 16047481    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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