Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------bZIP60(1)                                                                          --------->bZIP60(1)                                                                          <---------ANAC58                                                                          --------->TGA2(1)      <-----------GT1                                                     <---------TGA2(1)  <---------YAB1                                                          --------->ANAC55(2) <---------AHL20(2)                                                       <---------ANAC58 --------->AHL20(2)                                                       --------->ANAC58 -------->YAB1                                                            --------->ANAC58 --------YAB1                                                             <---------ANAC55(2) -----HAHB4           ------>NtERF2                                     <---------TGA2(2) ------ICU4          --------->ANAC46                                  ----------->HVH21 ----->ATHB51     --------->ANAC46                             --------->AtMYB61 -----YAB1      <---------ANAC58         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ICU4      <---------ANAC58    <-----------GT1        --------->REM1(1) -->YAB1     <--------P <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3)<---------------AGL15 --HAHB4     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ZAT6   ----------->TGA1 ---ICU4 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------>ZmHOX2a(1)------->GAMYB    --------------->AGL15   tattaaaattactaggttgctcgacaccacaatttgtattactagttcctgcgctatctctacaaccatctccatgacgtaaccatacatagtagtttgg  15960700                                                        <---------TGA2(1)                                              <---------ANAC46                                      ----------->RAV1(2)                 --------->LBD16    xxxxxxxxxxxxxxxx>smallRNA(i)                --------->DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               --------->ANAC46   <---------ARR14(2)    <---------bZIP60(1)             <---------ALFIN1     --------->ARR14(2)    --------->bZIP60(1)                         <         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58                               --------        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58--------->YAB1            --------->MYB46(3)   cataagtgatgttttccaccgcaaatttcccttgcaaatcgcctgttttcttgtagtgacataatcgtattttgaaaacaattcccttcaacaaataaag  15960800                        --------->ARR11(3)                                                          <                     --------->YAB1          <---------ANAC58                <--------P             -           --------->GLK1(1)                 <---------ANAC58               <---------MYB52(1)     --          --------->ARR14(2)               <---------At5g28300             --------->LBD16         --          <---------ARR14(2)              <-----------GT1                 <---------HSFB2a(2)     <-- -----------GT1   --------->YAB1       <----------DOF2                    --------->HSFB2a(2)-------- -->DOF2  <---------GLK1(2)   <---------YAB1 <---------ANAC46            <---------LBD16     <-------   tttttcaattcggatttgcataataagaaattgttatagttcttttaccgtgttcttgtatagttgccaattcgttccggtaagtttatatgccaaattt  15960900                                 ---------->ID1                               <-----------RAV1(1)                             <----------DOF2                          ------>NtERF2  ---------->DOF2         --------->LBD16 <------NtERF2           --------->ANAC46                 <---------ANAC58 ---------RAP2.6(3)     <---------LBD16             <---------ICU4 -------->LBD16   --------->AHL20(1)                -------->ATHB1 ------->ETT(1)   <---------ARR11(3)                --------->ATHB12 ------->LBD16    <---------AHL20(2)                --------->ATHB51 -------LBD16     <---------AHL20(1)               <---------ATHB51 <---------WOX13(1)             -- ->ARR14(2)       --------->ARR11(3)               --------->ICU4<---------YAB1            ------->TEIL --ARR14(2)       --------->AHL20(2)       <---------YAB1 <---------ANAC58<---------AHL20(2)      *TSS   gccggaaagttttttggaaatatattcccgcctttgttgttttttgtaattgaattattgtcttgttgtgatagatttattcaagttttcatgtatattc  15961000                                                                     <------NtERF2                                                                   <---------RAP2.6(2)                                                                   <---------ANAC58                                                            <------MYB46(1)                                                            <---------ANAC55(2)                                                            <------MYB83                       ------               --------->ATHB12                            --------->MYB111(1)                -------        <---------MYB46(3)                             --------->ATHB12    ----------->GT1    -------     --------->ARR14(2)                             <----------DOF2*TSS   --------->HSFB2a(2) -------     <---------GLK1(2)                  <------------CBF   --------->MYB59<---------HSFB2a(2)<-------     <---------ARR14(2)       <---------ARR11(3)---------->ID1     <---------ANAC58          -------- --------->HVH21         ------------>CBF      <-----------GT1     <---------ANAC46        -------->P   agtgacagatttgttgatcatttgtttgacaatttctttgaacattgtttttctctttgattaggtatggcgtcttctagtaaaaacatcacttacccgc  15961100                                                                                            <------MYB46(1)                                                                                            <------MYB83                                                                                           --------->MYB59                                                                                       --------->YAB1   <----------DOF2                                                                     --------->ATHB12 ---------->ID1          <----------DOF2                                          <---------GLK1(2) >NtERF2 --------->HSFB2a(2)                                                 <---------ARR11(3) -->ANAC46              <---------DAG2             <---------ZAT2            --------->ARR11(3) -->ANAC58           <-----------GT1               <---------At4g35610----------->GT1 --------->ICU4 -->ANAC58       >>>>>>>>>GT-1               ------->TEIL            <---------ATHB12 <---------YAB1 --LBD16 <---------HSFB2a(2)            <------ZmHOX2a(1)      <-----------GT1<------ZmHOX2a(2)     < ->MYB46(3)   ----------->GT1        <------ZmHOX2a(1)  <----------DOF2--------->TOE2(3)   <---------TOE2(3)   ctcgtctttatccagaaggtaaatcacctttgcaaaataggaggatgaaccatagctgctttgtttcacaaatcgttaagatcagattatgattaggttg  15961200                     --------->ARR11(3)                                             <---------ZAT18               <-------GAMYB                                                  <---------ALFIN1              <---------MYB46(3)                                         --------->At4g35610              --------->MYB52(2)                                         <---------At4g35610          <---------HSFB2a(1)                                 <---------AHL20(1)    --------->ZAT14          <------MYB46(1)        <---------ANAC58             --------->AHL20(1)    <---------ZAT14          <------MYB83           <---------ANAC58   <---------At4g35610  --------->ZAT2          --------->HSFB2a(1)    <---------ANAC46--------->At4g35610     <---------ZAT2         <---------AtMYB61   <----------DOF2     <---------At4g35610   <---------DEAR3(1)      ------ ---------ANAC46     <---------ARR11(3)   ---------->DOF2    --------->AHL20(2)   --------->ZAT14   tgatgtatgggaaggtttgttgaaatcttcactttgtgtgtttataaagtttgctgatgcgaaatatatatgggctgctcacactgttcactacttcctt  15961300                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                               <---------WOX13(1)                                             --------->ATHB12 <---------GLK1(2)     <---------ZAT2                        <---------WOX13(1)<------------------------ANAC81     --------->ZAT2  <----------DOF2     --------->ATHB12   ----------->ARR10     ----------->RAV1(2)          <---------YAB1           --------->YAB1     --------->At4g35610       --------->GLK1(2)<---------MYB46(3)     <---------At4g35610--------->YAB1  <---------YAB1  --------->WOX13(1)               <-----------GT1 >ZmHOX2a(1)     --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->CCA1(2)   acaaatcagctgagcgtcaacaactttcatgagattatgtctgtgattgatggatggccaattagattttctcttactgaatttgtggatataacgagtc  15961400                      --------->WOX13(1)                                    --------->TOE2(2)                     <---------WRKY12                                       --------->TOE1(2)                    --------->WRKY18(1)                                    <---------HSFB2a(1)                  --------->ANAC58                                  <-------GAMYB        ------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ARR11(3) <---------ALFIN1                          --------->ALFIN1      --------->ARR11(3)--------->MYB46(3)                       <---------ANAC58        <---------MYB52(1)  --------->YAB1  --------->ANAC58                               <---------ANAC58    --------->PCF5   tcaattgtgatcttcttgacaagtcaaccacttgtgaaattggacactatgagttttggaatgaaatgggtgttggaacatacgatggtcccttgtttat  15961500                                                              <------MYB46(1)                                                             --------->MYB111(1)                                                             <---------TOE1(2)                                                             --------->MYB59                                                            <---------MYB55(1)                                                          <------MYB46(1)                                                          <------MYB83                                                          <---------MYB46(3)                                                         --------->MYB55(2)                                                         --------->MYB46(2)                                                         <---------MYB46(3)                                                         <---------AtMYB61                                                         --------->MYB111(2)                                                         --------->MYB111(1)                                                        <---------MYB55(1)                                                        <--------P   <---------ANAC58                                                       <-------GAMYB <---------ANAC58                                                      --------->ATHB12                                                      --------->MYB55(2)                                       <---------YAB1<---------YAB1<---------YAB1                                     --------->CCA1(2)<---------MYB46(3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <-------TEIL                          --------->ANAC58        <-------TEIL<------MYB83           <---------GLK1(1)  <---------REM1(1)       --------->ANAC58       <--------P <--------P        <-----------RAV1(1)   tgagttgaagcatgtaatggatattagcaaggaatggagttatgagaagaggttgatggttggtaggttatgcttgttatctgttggagttcatgggatt  15961600  Previous    Next  AGI:  At1g42510.1    Description:  transposable element gene. CACTA-like transposase family (En/Spm), has a 4.8e-141 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=""Shooter"" (Zea mays) Range:  from: 15957171    to: 15960998    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g42515.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1) Range:  from: 15961067    to: 15961783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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