Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->YAB1 <---                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <---------ANAC58    <---                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                         <---------ANAC58        ----                                                            ------>MYB83<-------TEIL            <----                    =======================================================MADS_MADS<---------YAB1  -                    <---------------AGL15                 <---------MYB59<---------ANAC58     <xxxxxx               --------->LBD16                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    -------              --------->ANAC46               <---------ARR14(2)       <---------MYB52(1)      <------              <---------ANAC55(2)            --------->ARR14(2)     --------->MYB59 --------->ICU4 <-           ------->TEIL  --------->YAB1   --------->LBD16----------------->AG<---------ANAC58 <------         <-------TEIL <---------CCA1(2)  <-----------RAV1(2)------>MYB46(1) --------->At4g35610 ----- -------TEIL  --------->ANAC55(2)     <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxx   gtttcatgaaatgcatccgtaaccatatcatgaaatctattttccaggttatgcccataaccaaattgatcaggtacttgctgaccataattcgcatcat  15960600      <-----------GT1                                                     --------->bZIP60(1)  <---------YAB1                                                          <---------bZIP60(1) <---------AHL20(2)                                                       --------->TGA2(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <---------TGA2(1) --------->AHL20(2)                                                       --------->ANAC58 ------ICU4                                                               <---------ANAC55(2) xsmallRNA(i2)                                                            <---------ANAC58 -----HAHB4                                                               --------->ANAC55(2) ----->ATHB51         ------>NtERF2                                       <---------ANAC58 -----YAB1           --------->ANAC46                                     --------->ANAC58 -------->YAB1    --------->ANAC46                                      <---------TGA2(2) xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        ----------->TGA1 -->YAB1        <---------ANAC58                               ------->GAMYB --HAHB4        <---------ANAC58         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->REM1(1) ---ICU4 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------>ZmHOX2a(1)--------->AtMYB61--------------->AGL15 ---->ICU4   <--------P <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3)<---------------AGL15 xxxxxxxxxxxxxxxxxsmallRNA(si3)     <-----------GT1   --------->ZAT6   ----------->HVH21   tattaaaattactaggttgctcgacaccacaatttgtattactagttcctgcgctatctctacaaccatctccatgacgtaaccatacatagtagtttgg  15960700                                                        <---------bZIP60(1)                                              <---------ANAC58                                      ----------->RAV1(2)                 --------->LBD16    xxxxxxxxxxxxxxxx>smallRNA(i)                --------->DEAR3(1)--------->ARR14(2)    <---------TGA2(1)               --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------ALFIN1     <---------ARR14(2)    --------->bZIP60(1)                         <         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58                               --------        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC46--------->YAB1            --------->MYB46(3)   cataagtgatgttttccaccgcaaatttcccttgcaaatcgcctgttttcttgtagtgacataatcgtattttgaaaacaattcccttcaacaaataaag  15960800                        --------->ARR11(3)                                                          -                     --------->YAB1          <---------ANAC46                <--------P             <           --------->GLK1(1)                 <---------ANAC58               <---------MYB52(1)     --          <---------ARR14(2)               <---------At5g28300             --------->LBD16         --          --------->ARR14(2)              <-----------GT1                 <---------HSFB2a(2)     <-- -----------GT1   --------->YAB1       <----------DOF2                    --------->HSFB2a(2)-------- -->DOF2  <---------GLK1(2)   <---------YAB1 <---------ANAC58            <---------LBD16     <-------   tttttcaattcggatttgcataataagaaattgttatagttcttttaccgtgttcttgtatagttgccaattcgttccggtaagtttatatgccaaattt  15960900                                 ---------->ID1                               <-----------RAV1(1)                             <----------DOF2                          --------->LBD16  ---------->DOF2         ------>NtERF2 <------NtERF2           --------->ANAC46                 <---------ANAC58 -------->LBD16   --------->ARR11(3)                <---------ICU4 ---------RAP2.6(3)     <---------LBD16             --------->ATHB51 ------->LBD16    <---------ARR11(3)                --------->ATHB12 ------->ETT(1)   <---------AHL20(1)                -------->ATHB1 -------LBD16     --------->AHL20(1)               <---------ATHB51 <---------WOX13(1)             -- ->ARR14(2)       --------->AHL20(2)               --------->ICU4<---------YAB1            ------->TEIL --ARR14(2)       <---------AHL20(2)       <---------YAB1 <---------ANAC58<---------AHL20(2)      *TSS   gccggaaagttttttggaaatatattcccgcctttgttgttttttgtaattgaattattgtcttgttgtgatagatttattcaagttttcatgtatattc  15961000                                                                     <------NtERF2                                                                   <---------ANAC46                                                                   <---------ANAC58                                                            <------MYB83                                                            <---------ANAC55(2)                                                            <------MYB46(1)                    ------               --------->ATHB12                            --------->MYB59 ----------->GT1    -------        <---------MYB46(3)                             --------->ATHB12   <---------HSFB2a(2) -------     --------->ARR14(2)                             <----------DOF2<---------ANAC58           -------     <---------ARR14(2)                 <------------CBF   --------->MYB111(1)               <-------     <---------GLK1(2)        <---------ARR11(3)---------->ID1     <---------RAP2.6(2)     -------->P --------->HVH21         ------------>CBF      <-----------GT1     *TSS   --------->HSFB2a(2)--------   agtgacagatttgttgatcatttgtttgacaatttctttgaacattgtttttctctttgattaggtatggcgtcttctagtaaaaacatcacttacccgc  15961100                                                                                            <------MYB83                                                                                            <------MYB46(1)                                                                                           <---------TOE2(3)                                                                                       --------->YAB1   <----------DOF2                                                                     --------->ATHB12 ---------->ID1          <----------DOF2                                          <---------GLK1(2) >NtERF2 <---------HSFB2a(2)                                                 <---------ARR11(3) -->ANAC58              <---------DAG2             <---------At4g35610       --------->ARR11(3) -->ANAC58           <-----------GT1               <---------ZAT2     ----------->GT1 <---------YAB1 -->ANAC46       >>>>>>>>>GT-1               ------->TEIL            <---------ATHB12 --------->ICU4 --LBD16 --------->HSFB2a(2)            <------ZmHOX2a(1)      <-----------GT1<------ZmHOX2a(2)     < ->MYB46(3)   ----------->GT1        <------ZmHOX2a(1)  <----------DOF2--------->TOE2(3)   --------->MYB59   ctcgtctttatccagaaggtaaatcacctttgcaaaataggaggatgaaccatagctgctttgtttcacaaatcgttaagatcagattatgattaggttg  15961200                     <---------ARR11(3)                                             <---------ZAT18               <-------GAMYB                                                  <---------ALFIN1              <---------MYB46(3)                                         <---------At4g35610              --------->MYB52(2)                                         --------->At4g35610          <------MYB83                                        <---------AHL20(1)    <---------ZAT14          <---------HSFB2a(1)    <---------ANAC58             --------->AHL20(1)    --------->ZAT14          --------->HSFB2a(1)    <---------ANAC46   <---------At4g35610  --------->ZAT2          <------MYB46(1)        <---------ANAC58<---------At4g35610     <---------ZAT2         <---------AtMYB61   <----------DOF2     --------->At4g35610   <---------DEAR3(1)      ------ ---------ANAC46     --------->ARR11(3)   ---------->DOF2    --------->AHL20(2)   --------->ZAT14   tgatgtatgggaaggtttgttgaaatcttcactttgtgtgtttataaagtttgctgatgcgaaatatatatgggctgctcacactgttcactacttcctt  15961300                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                               <---------WOX13(1)                                             --------->ATHB12 <---------GLK1(2)     <---------At4g35610                   <---------WOX13(1)<------------------------ANAC81     --------->At4g35610          <---------YAB1            ----------->ARR10     <---------ZAT2            --------->GLK1(2)<---------MYB46(3)     --------->ZAT2  <----------DOF2     --------->ATHB12  --------->YAB1     ----------->RAV1(2)--------->YAB1  <---------YAB1  --------->WOX13(1)               <-----------GT1 >ZmHOX2a(1)     --------->MYB46(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->CCA1(2)   acaaatcagctgagcgtcaacaactttcatgagattatgtctgtgattgatggatggccaattagattttctcttactgaatttgtggatataacgagtc  15961400                      --------->WOX13(1)                                    --------->TOE1(2)                     <---------WRKY12                                       --------->TOE2(2)                    --------->WRKY18(1)                                    <---------HSFB2a(1)                  --------->ANAC58                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        ------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <-------GAMYB      <---------ARR11(3) <---------ALFIN1                          --------->ALFIN1      --------->ARR11(3)--------->MYB46(3)                       <---------ANAC58        <---------MYB52(1)  --------->YAB1  --------->ANAC58                               <---------ANAC58    --------->PCF5   tcaattgtgatcttcttgacaagtcaaccacttgtgaaattggacactatgagttttggaatgaaatgggtgttggaacatacgatggtcccttgtttat  15961500  Previous    Next  AGI:  At1g42510.1    Description:  transposable element gene. CACTA-like transposase family (En/Spm), has a 4.8e-141 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon=""Shooter"" (Zea mays) Range:  from: 15957171    to: 15960998    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g42515.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1) Range:  from: 15961067    to: 15961783    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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