Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ANAC46                             <------MYB46(1)                             <------MYB83                            --------->MYB111(2)                            --------->MYB111(1)                            <---------MYB46(3)                            --------->MYB55(2)                            --------->MYB46(2)                            <---------AtMYB61                           <---------MYB52(1)                                ------>NtERF2                           <---------MYB55(1)                               --------->DEAR3(1)                           <--------P                                     <---------ATERF1(1)                          <-------GAMYB                       <-----------------AGL1   <-----------RAV1(2) --------->GLK1(2)       <---------MYB46(3)                   <---------ANAC58        --------->ZAT18 -->CCA1(2)             <---------ANAC58             <---------------AtSPL8 --------->DREB2C(2) --AHL20(1)             <---------ANAC58        <---------bZIP60(2)    <------ZmHOX2a(1)  <---------- ->AHL20(1)             <---------RAP2.6(2)  ----------->HVH21<---------ANAC46        <---------ZAT14 >AHL20(2)             <---------LBD16   <---------YAB1       <---------ANAC58      --------->ZAT18   aagaatcagagaatgaatgaaattttgcggttggtgtggatttatgagtgacatgtttgtactgacttgtttaggacaccgccaagagcgcaggggatga  15949000                                                         --------->ATHB12           <---------YAB1                                -------->ATHB1         --------->YAB1                <---------ANAC58  <---------ICU4    <---------ZAT18                    <---------ANAC58 <---------ATHB12    --------->ZAT14            --------->GLK1(1)        --------->ICU4                    <---------YAB1    <---------ZAT14   <---------ARR14(2)                <---------YAB1        <---------ARR14(2) -----------WRI1      --------->ARR14(2)     --------->ANAC46                 --------->ARR14(2)   gaacattgcactcataaatgagcagttcgtcagaattcatagcgtctccaccattgaaatcattgagacatccaattgcatatttgtgttttatgagagc  15949100                                                                                         <------NtERF2                                                                                        --------->ABI4(1)                                                                                        ------>NtERF2                                                                                       --------->RAP2.3(3)                                                                                       --------->RAP2.3(2)                                                                                       --------->ATERF1(2)                                                                                       --------->RAP2.6(2)                                                                     <---------ANAC58  --------->DEAR3(1)                                 --------->ANAC58                    <---------ANAC58  <---------ATERF1(2)                                 --------->ANAC46                    <---------ANAC46 --------->ORA47(2)                                 --------->ANAC58                 <----------DOF2     --------->ERF1                            --------->ZAT18                      <---------DAG2       --------->RAP2.3(1)                          <---------WOX13(1)                  <---------ALFIN1        --------->DEAR4(2)                        --------->ATHB12                 <----------DOF2              --------->ATERF1(1)                       ------>ZmHOX2a(1)              <---------ALFIN1               <---------RAP2.3(1)     <---------ETT(2)  <---------YAB1 <-----------RAV1(1)<---------DAG2              <---------ATERF1(1)    <---------------------WRI1   --------->ANAC55(1) --------->MYB46(3)      <------ZmHOX2a(2)     --   attgatgtcgataccttcagggttcctgattgcacaagtaatgtcgcttactacaaccactttcccacctttcttgtggatcaacttcgccgcccatgct  15949200                                <<<<<<<<<CBP60g                                <<<<<<<<<SARD1      <---------ANAC55(2)    <---------TOE1(3)                      <---------CCA1(2)             --------->ANAC55(2)    <---------TOE2(3)                <-----------HVH21               <-----------HVH21    <---------TOE2(3)        <------ --------->HSFB2a(1)--------->ANAC55(2)   <----------DOF2            <---------TOE1(3)     --------->YAB1 --------->RAV1(1)  <---------ANAC55(2)   <---------DAG2     --------->ANAC46 --------->CCA1(2)   ccaacattcccaaaaccctatcacatatcatccaaatttctcaacttttcggtcacatattatacacaattaaggttgaggtatgagataaactgataat  15949300                                                                                             --------                                                                                        ----------->HVH21                                                                                      --------->ANAC55(2)                                                                                      ===============                                                                                      <---------ANAC55(2)                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                                      --------->O2                                                                                      <---------TGA1a                                                                                      --------->TGA1a                                                                                  <-----------HVH21                                                                  <------NtERF2   <-----------TGA1    <---------ANAC58                                             ------>NtERF2--------->ANAC46<------    <---------ANAC55(2)                                 <---------ARR11(3)  --------->REM1(1)<-------    <---------ANAC58                            <---------At4g35610         <---------ALFIN1 --------    <---------ANAC46                            --------->At4g35610 ============================bZIP_DOF    <---------ANAC55(1)                 <---------------AGL15<---------DEAR3(1)  --------->bZIP60(2)    --------->ANAC55(2)              <-----------GT1    --------->ARR11(3) <---------ZAT14   <-------  <-----------GT1                --------->ATHB12   ============================================bZIP_DOF ---ICU4          <-----------HVH21<---------GLK1(1)---------->DOF2 ---------->DOF2   <---------O2   ggttttacgtgaataacaaatgtcaaaccctgaattgatttcccatactcagcaaaaagagcttcggtggcaaagactacacctcgtcatgtgacagctt  15949400                           --------->ANAC46     ------>MYB83        --------->ANAC46     ------>MYB46(1)<------ZmHOX2a(2)   <---------MYB46(2)------>ZmHOX2a(2)   <---------MYB59 --------->ARR14(3)   <---------MYB111(1)   *TSS ------>MYB83      <---------ARR11(3) ------>MYB46(1)   --------->ARR11(3) -------->P        <---------ARR14(3) ->ZAT2   ------->TEIL   --------->REM1(1) =========MYC_MYB  --------->ARR14(2)                   --------->DAG2 ---GLK1(2)--------->MYB46(3)---------->DOF2           ---------->DOF2                        ------- --ZAT2<---------ATHB12------>ZmHOX2a(1)     <---------AHL20(2)                              <------- ->At4g35610       <---------ARR14(2)        --------->AHL20(2)                      <---------HSFC1(2) --At4g35610     ----------->ARR10     ----------->RAV1(1)                           --------->HSFC1(2)   ccctacctaatgaaccaccaagatcctacaccaaagtgatacaacatttaaatctaaaaaagctcaaaactttggtagtcacacagaaacatcgaatcat  15949500                                       --------->ATHB12                                      <---------YAB1                         <---------ANAC46                <---------AHL20(2)    --------->ICU4               --------->YAB1       --------->YAB1              <---------ANAC46              --------->AHL20(2)   --------->ICU4               ----------->GT1                   <--           --------->AHL20(2)     <---------WOX13(1)       --------->CCA1(2)             <----------DOF2 -->YAB1  --------->AHL20(2) <-------GAMYB               --------->YAB1                  <---------DAG2 --ATHB12 <---------AHL20(2)<---------MYB46(3)          <---------YAB1      <---------ANAC46      ---   caactatttcaaataaataaaaatgcttcgtggttgaatgatgatgggagaagatgctatgatatggggtatttagagtcgtataagttagctttttgaa  15949600             --------->YAB1           --------->ANAC58           --------->ANAC58       <------MYB46(1)       <------MYB83     <--------P                                                                   --------->ANAC46    <-------GAMYB                                                               <-----------GT1    <---------ANAC58              <-----------------AGL1                       --------->KAN4(2)    <---------ANAC58              <-----------------AG                        <---------KAN4(1)   --------->MYB55(2)         --------->YAB1                                  <----------TaMYB80   --------->MYB52(2)         --------->TOE1(3)                               --------->KAN4(1)   <---------MYB46(3)         --------->TOE2(3)                              ---------->TaMYB80     <   <------MYB83    --------->ARR11(3)                                  ---------->DOF2             <-   <------MYB46(1) <---------AHL20(1)                                 <---------AHL20(2)        <----   --------->ATHB12--------->AHL20(1)                        ----------->GT1 <---------KAN4(2)-------  <---------AtMYB61<---------ARR11(3)           <---------AHL20(2)   <---------AHL20(2)       ------- -------ARR11(3)   --------->AHL20(2)          <---------AHL20(2)--------->AHL20(2)          <------- ------>ARR11(3)   <---------AHL20(2)          --------->AHL20(2)<---------AHL20(2)         <--------   gatgttggttggcaagcataatatattagaaaccataacacatttggaataaaattttggaaattgtttaatttaaaggaatataccacatatttatgtt  15949700                                                                                            <--------                                                                                       --------->AHL20(2)                                                                                       --------->AHL20(1) --------->ATHB12                                                           --------->AHL20(2)     <- ---------AHL20(2)                                                          <---------AHL20(2)     -- --------WOX13(1)  --------->YAB1                                        <---------ARR11(3) --------- -----YAB1        <---------YAB1                                         --------->ARR11(3)--------->AHL20(2) -->TOE2(3)     <---------GLK1(1)                            <---------AHL20(2)        <---------AHL20(1) -->YAB1<---------MYB46(3)                       <---------YAB1   ---------->DOF2      <---------AHL20(2) --YAB1 --------->MYB111(1)             <---------TOE2(3)   <---------AHL20(2)        --------->AHL20(2) -TOE2(3)       --------->GLK1(1)   <----------DOF2         --------->AHL20(2)        <---------ATHB12   aattgattagtagttgggatatcatagagatgtaatcgatttatggatattatgcataagaaataaatgaaagaagattttaataccaataaattttatt  15949800                                            --------->GLK1(2)                                  <---------ANAC55(2)                                  <------MYB83              --------->HSFC1(2)                                  ----------->GT1           <---------HSFC1(2)                                  <------MYB46(1)           --------->HSFB2a(1)                                  --------->ANAC55(2)       <---------HSFB2a(1)                                 --------->MYB111(1)      <---------GLK1(2)                                 --------->MYB46(2)       --------->ARR14(2)                                 --------->MYB59         <------ZmHOX2a(1)                         --------->ATHB12 --------->HSFB2a(1)                   ---------->DOF2             --------->TOE2(3)  <---------MYB55(1) <---------AHL20(2)         <---------AHL20(2)   --------->ZAT6       --------->ICU4    <---------HSFB2a(1)            --------->AHL20(1) -AHL20(2) <---------ARR11(3)  <---------MYB52(1) --------->AHL20(2)     <---------AHL20(2) --------MYB52(1)     --------->YAB1  --------->ANAC58  <---------YAB1   <---------AHL20(1) ------->DOF5.7(2)   --------->ICU4   --------->ANAC58--------->YAB1    --------->AHL20(2) >AHL20(2) <-----------ARR10   <<<<<<<<<MYB98     <---------AHL20(2) --------->YAB1   cgttatctctacaaatcttagcaaaaatgatttgttaggtaagaaaattctattaattaggattcttccattgattatattttaaagtcccaaactaata  15949900  Previous    Next  AGI:  At1g42490.1    Description:  pseudogene, glutamate dehydrogenase (fragment), blastp match of 78% identity and 1.6e-94 P-value to GP|15004984|dbj|BAB62170.1||AB066298 glutamate dehydrogenase {Brassica napus} Range:  from: 15948317    to: 15949425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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