Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <----------DOF2                                <---------DAG2                             ---------->ID1                             <-----------GT1                          <---------GLK1(1)                      <---------AHL20(2)                      <---------ARR11(3)                     --------->AHL20(2)                       --------->ARR11(3)        <---------ANAC46              <---------HSFB2a(2)                      <---------ANAC46                 <---------ANAC55(2)              --------->HSFB2a(2)                      <---------ANAC58            --------------->AGL15         <---------ATHB12 --------------->AtSPL8       <---------ANAC58            <---------------AGL15 ---------ANAC58     <---------AHL20(1)          <-----------RAV1(1)  --------->GLK1(1) ----------->GT1 ---------ANAC58     <---------AHL20(2)    <---------AHL20(2) <---------GLK1(2) <-----------GT1    <-   ttgcttctccaatcttctggcaattttttttgtacttttctgaatttttttttgttggcttgaagatttttgaaatccattttttctattatgtgaaaac  15929000                                                                           <-----------GT1                                           ----------->GT1               <---------AHL20(2) <--------          ----------->GT1      --------->AHL20(2)       ---------->DOF2 --------->AHL20(2)  <-------- --------YAB1       --------->YAB1     <---------ARR14(2)   --------->ARR11(3) ----------->GT1   cattatacaaaatagtgatttatcaaaaaacaaaaaattcgaattctgtaacaaaaaaaaaagaaattgtggaattttatcttgttaaatccagcttttt  15929100                                                                                           <---------AHL20(2)                                    <------------CBF                                      --------->AHL20(1)                             --------->ATHB12                                             <---------AHL20(1)                            --------->ICU4                                               <---------AHL20(2)                            <---------YAB1                                             <-----------TBP                           <---------TOE2(3)                                         --------->AHL20(2)                          --------->YAB1                                         --------->AHL20(2)                         --------->ICU4    <-----------GT1                 <---------GLK1(2)   <-----                 <<<<<<<<<RAP2.2  <---------TOE2(3)                 ----------->TBP<-----------TBP -DAG2          <---------TOE2(3) <---------YAB1 <---------DAG2    ------->TEIL  <---------AHL20(2) --DOF2         <---------YAB1 <---------WOX13(1)<----------DOF2----------->GT1<---------YAB1<-------   ctattagtttgtattatttagattgtattgatgattaacattgatatacaactttttttttttgaaatgtatatatagattatttttttatatatatttt  15929200                                                      <---------ANAC58                                                      --------->ANAC55(2)                                                      <---------ANAC58                                <--------HAHB4        --------->ANAC55(1)            --------->AHL20(1)  --------->ATHB12      <---------ANAC55(2)            <---------AHL20(2)  <---------ICU4        --------->ANAC46         ------------>CBF            --------->AHL20(2)  --------->YAB1<------------CBF          <-------GAMYB              --       --------->LBD16         <---------ATHB12      <---------TOE2(3) <---------MYB46(3)       -----    ------>ZmHOX2a(1)      <---------ATHB12  --------->KAN4(1)        <---------RAP2.6(2)<---------ANAC58 ----AHL20(2)      <---------ZAT6       <---------TOE2(3)      --------->CCA1(2)         <---------ANAC58 --AHL20(2)--------->AHL20(2) ------->TEIL<------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)-----   tttgtcctccgaaattaattagagttcaaatgaatcatttctaaggaatattgtttacgtaagtgatatgatgcggttgaacacaattttctcgtgccaa  15929300                                                       <-----------GT1                                                     --------->AHL20(2)                                                     --------->YAB1                                                 --------->AHL20(2)                                                 --------->AHL20(1)                                                 <---------AHL20(2)                                 -                                    <---------------AGL15                                           < ------->CCA1(2)                    --------------->AGL15        <----------DOF2                   <- ---->ANAC58                     <-----------GT1--------->AHL20(2)                              <---- ---->ANAC58             ---------->ID1  ----------->GT1------------>CBF---------->ID1          <----   gctatacgatttgattttttgaaatttgtttttttttgctattttgtgaaattaattatacaatttccttttttgtttttttgaaagtctctgaatttga  15929400                                          <-------GAMYB                                         <------MYB83                                         <---------MYB46(3)                                         <------MYB46(1)                                      <-------GAMYB                                     <---------MYB46(3)                                     --------->MYB55(2)                  --------->ARR14(2)                                     --------->MYB52(2)                  <---------ARR14(2)                                     --------->MYB111(2)                 <---------ARR11(3)                                   <---------MYB52(1)  --------->ANAC58  --------->ARR11(3) <-------GAMYB                   <---------YAB1        --------->ANAC58 <------ZmHOX2a(1)        ---- -------->MYB111(2)           --------->GLK1(2)    --------->ALFIN1 <---------At4g35610     --------- ---------MYB46(3)           --------->ARR14(2)  <---------ANAC58   --------->At4g35610     <-------- -------P  <---------ANAC46  <---------ARR14(2)  <---------ANAC58   --------->ZAT2         <---------GLK1(1) -----TOE2(3)                <---------GLK1(2)   <---------ANAC46 --------->YAB1           --------->GLK1(1) -----TOE1(3)       ------------>CBF <-----------RAV1(1)       --------->WOX13(1)        --------->YAB1   ggttgttgttgttgtgttttgtaccaatgcagattctgtttgttggttatggagtggaagcaaaacaatcagcaggatattgtgctatgtatgatatctg  15929500                 --------------->AtSPL8                                               <---------ICU4         ----------->HVH21                                                           <---------AHL20(2)         --------->ALFIN1                                                    <<<<<<<<<TBF1 ----->ALFIN1    <---------------AtSPL8                                   <<<<<<<<<TBF1 >ARR11(3)      ---------->DOF2        <---------ICU4        <------------------------ANAC81    ----- -ARR11(3)  <---------ANAC46     <----------DOF2<---------ANAC46      <-----------GT1--------->AHL20(2)   tggagcaagaagtgatgggaaagtactaaattgccctttcaacattccttctgtgaaggtcagtgttttttttttcttcttcttctattaattactcaaa  15929600             <---------WOX13(1)            <---------ANAC58                                                                       --            <---------ANAC58                                                                      <--          <---------YAB1                                                                        -----   --------->ARR11(3)                       <<<<<<<<<TBF1                       ---------->DOF2 ----- <---------YAB1                   <---------ZAT14         --------->ATHB12    <-------TEIL   -------- ----->DOF2--------->ATHB12       --------->ZAT14        <---------YAB1      --------->CCA1(2) ------   aagatgattttgttgattgtttctctactaatgctcttcactcttcttcttctagcctgatgatttgttatcttcaaagattcaaagcttatgtccaaca  15929700            <-----------RAV1(1)        --------->ICU4 ------->ATHB12                               --------->ANAC58 -------ATHB12                                --------->ANAC58 ---->YAB1  <---------MYB46(3)               <-------TEIL ---->WOX13(1)                            <---------ANAC58 --->RAV1(1)--------->MYB52(2)            <---------ANAC58                                 <--------- --->MYB46(3)<-------GAMYB          <-------TEIL <---------TOE1(2)                 ------->TEIL   atcactggcaatgtttgttgcacagagactcaatttgatacattacgttcgcaagttcaacaggtaccaaaaacaccattctttgaatctcttctttttc  15929800                                                                      <-------GAMYB                                                                      <---------ANAC58                                                                      <---------ANAC58              -                                                                     <---------MYB46(3)            <-       <---------ARR14(3)                                            <------MYB46(1)         <-------       --------->ARR14(2)                                            <------MYB83           <--------       <---------ARR11(3)                                            --------->MYB55(2)     <--------       --------->ARR11(3)                                            --------->MYB52(2)     ---------       <---------GLK1(2)                                            <---------AtMYB61       ---------  <-------TEIL                <---------AHL20(2)                 <-----------RAV1(1)      <---------ARR14(2) --------->CCA1(2)--------->ALFIN1                              <---------YAB1           <------ZmHOX2a(1) -DOF2 --------->ARR14(3)   <---------AHL20(2)             <----------DOF2             <---------TOE2(3)   aagattcaagattttcaaatgtgtgtgtatatttttttttttttttgttatcaggctattccttttattgttggttgtccagcatgtttgaggaactttc  15929900  Previous    Next  AGI:  At1g42470.1    Description:  patched family protein. similar to patched family protein [Arabidopsis thaliana] (TAIR:AT4G38350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66238.1); similar to H0409D10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66746.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47519.1); contains InterPro domain Niemann-Pick C type protein; (InterPro:IPR004765); contains InterPro domain Sterol-sensing 5TM box; (InterPro:IPR000731); contains InterPro domain Patched; (InterPro:IPR003392) Range:  from: 15929427    to: 15937648    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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