Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->AHL20(2)                                             <----------DOF2     <---------AHL20(1)                                             <---------DAG2     --------->ARR11(3)       <---------YAB1                      ------>MYB83     <---------ARR11(3)     <---------ANAC58             ------>ZmHOX2a(2)     --------->AHL20(1)     <---------ANAC46    <---------CCA1(2) ------>MYB46(1)          ------->GAMYB <---------AHL20(2)         <---------ANAC58<---------DAG2      <---------ALFIN1     --------->YAB1 -----ARR11(3)             ---------->ID1   --------->TOE1(3)  --------->MYB46(3)   <---------YAB1 ---->AHL20(1)         <----------DOF2      --------->TOE2(3)<-----------GT1      ----------->GT1 ---->AHL20(2)   --------->CCA1(2)        -------->P    <------ZmHOX2a(2)    --------->ANAC58       - -----AHL20(1)  --------->ARR14(2)    --------->ANAC58 <---------ARR14(2)    --------->ANAC58     --- -MYB59         <---------ARR14(2)    --------->ANAC58 --------->ARR14(2)--------->YAB1 <-----------GT1   tattaaaaatatttatcggatacaactttgtcgtgataactagcaaccttatatcgcgatctgttaccacccttttcataagcattgtaataaccctctc  15919500                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                      --------->MYB52(1)                                               <---------At4g35610                                 --------->ZAT14    --------->MYB46(3)                      ------>MYB46(1)          --------->At4g35610                      ------>MYB83          --------->At4g35610                             <--------      --------->ARR11(3)         <---------ZAT14   -------->P               <----------DOF2 ---------      <---------ARR11(3) ---------->DOF2    <---------At4g35610        <<<<<<<<<TBF1       <---------GLK1(1) ---------->GT1     <---------MYB59        --------->ARR14(2)     <------------------------ANAC81 ------>At4g35610   --------->AtMYB61      <---------ARR14(2)  ------>ZmHOX2a(1)    <----------DOF2   aactgtaacatcttcttcaagaccaaacaaagtactgtagtagggcatctgcttaccaccggttcctctcttcttcttcttttgaacttttggatatttg  15919600                              --------->TOE2(3)                                       <------MYB46(1)                    --------->YAB1                                                    <------MYB83                    --------->TOE2(3)                                               <--------P  --------->ANAC46  --------->TOE1(3)                                   <-----------ARR10 --------->HSFC1(2)  --------->ANAC58 <<<<<<<<<ARR2              <---------LBD16          <---------CCA1(2)  <---------HSFC1(2)  --------->ANAC58 <<<<<<<<<ARR1 --------->MYB52(1)<---------ZAT14  ------->GAMYB  <-------GAMYB -ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ZAT14-------->P      <---------MYB46(3) >ARR14(2) ----------->GT1    --------->TOE1(3) --------->LBD16 --------->MYB46(3)--------->MYB55(2)<   ccacaaggaagaccggtaacaatcttaaactcccttaacgaaaattggaccggagtactggcgaaaacaacccaaatctcatgggggttggcaacttcca  15919700                                                   --------->LBD16                                                  <---------HSFB2a(2)                                                 <---------LBD16                                                <---------LBD16                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ---------->DOF2             <---------DEAR3(2)        ----------->GT1                <---------LBD16           --------->DEAR3(1)           ------>ZmHOX2a(2) ----------------->AGL1              --------->ANAC46       ---------->DOF2                  <------ZmHOX2a(2) <---------ANAC58                  ---------->DOF2--------->HSFB2a(2) ---------->DOF2       <-------- <---------ANAC58                 <---------ARR14(2)  <---------GLK1(1)                     --------- -----------------------TaNAC69(2)--------->ARR14(2)  --------->GLK1(1)                 ---------->DOF2   attgcctactcagtaaaaagagcccaaaactcgccgaaaacgccggtttattcgggaaatctaaaagccccccaaagaactgttgagaatgaaagatcgc  15919800                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                              ------>MYB46(1)                                                                                              ------>MYB83                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                            <--------                                                                                           --------->DEAR3(2)                                                                                           <---------MYB52(2)                                                                                           <---------MYB55(2)                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                      --------->ANAC46                                                             <----------DOF2          --------->ANAC58                                     <---------YAB1     <-----------GT1               --------->ANAC58       ---------->DOF2      <<<<<<<GRF7          <---------ZAT18          <---------ARR14(2)--------- -ARR11(3)                ----------->HVH21  --------------->AtSPL8       <-----------ARR10--------->MYB46(3) >ARR11(3)       --------->YAB1>>>>>>>>>TAC1 <---------------AtSPL8       --------->ARR14(2)------->GAMYB   tcttgttcatcaagcgcgtttataatccctgacagtgttttgattttgtggtacacattaacccttttgccaagcggctcttctccaaacgcaaccaacc  15919900                                                             <----------ID1   <---------MYB52(1)                                       --------->At4g35610  <------MYB46(1)                                        <---------At4g35610  ----------->GT1                                        <---------ZAT14  <------MYB83                                           --------->At4g35610 --------->MYB59                                    ----------->HVH21 --------->MYB46(2)                                 <---------WRKY38(1) --------MYB52(1)                                   --------->ETT(2)                              <-- --------ARR14(2)                                  --------->SPL7              --------->ANAC58   --- ------->ARR14(2)                              --------->ZAT18                 --------->ANAC58  ---- ->P                                    <---------REM1(1)--------->ZAT2    --------->ANAC58      <--- -->MYB52(1)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ANAC46    ------ ->MYB55(1)                      ------------>CBF--------->DEAR3(1)        --------->ANAC58  -------- ->MYB52(1)              *TSS   <<<<<<<<<<<<<<<<<LFY<---------ETT(2)      ------>MYB83    --------->GLK1(1) >AtMYB61               ----------->GT1 <---------ANAC46 <---------ZAT2   -------->P <------------CBF -MYB55(2)             --------->HSFB2a(2)     <---------ZAT18----------->RAV1(1)  <---------RAP2.6(3) >MYB46(3)             <---------HSFB2a(2)   xxxxxxxxxxxxxxxx>smallRNA(i) ------>MYB46(1) <---------GLK1(1)   ggttcggtaattcaacgtcgtccatctggaaacaaaacaatggtgtaagcgcggtcgacagcagcgacaaaaaccctacccaagccgaattgaaatccaa  15920000                                                        <---------ANAC46                                                        <---------ANAC58                                                   <---------DEAR3(1)                                                  --------->SPL7                                                <---------SPL7                                                ----------->HVH21                                              <---------ANAC55(2)                                              --------->ANAC46                                              --------->ANAC55(2)     <----------DOF2                      <---------ANAC58  <---------ARR11(3)          ---------->DOF2<---------LBD16                      <-----------GT1 -------ICU4            <---------ATERF1(1)<---------SPL7               --------->At4g35610 ------>YAB1           --------->DEAR3(1) <---------ANAC58            <-----------RAV1(2) -------->CBF        --------->MYB52(1)  <---------MYB46(3)           <---------HSFB2a(2) ------ATHB12   <---------GLK1(1)        --------->ABI4(2)          <------ZmHOX2a(2) --->WOX13(1)   --------->GLK1(1)    <---------DEAR3(1) <---------ANAC58<---------At4g35610    <----- ---->CBF   --------->YAB1 ------>NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------ARR10   tcaataccttttaatgagaaatccaccggctccaaagggacggtgcttacgggacggtgcttataaatcgatccagatgagtttctactctataagcgtt  15920100                                                                                          <---------MYB52(1)                                                                                        <---------ZAT6                     <---------At5g28300                                                <---------MYB46(3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----------->GT1           ----------->HVH21                   <---------SPL7                --------->CCA1(2)                --------->ANAC58                   <---------ARR14(2)      --------->HSFC1(1)                     --------->ANAC58                   --------->ARR14(2)      <---------HSFC1(1)            <xxxxxxxxxxxxxxxxsmallRNA(i)         <----------DOF2                   <---------HSFB2a(2)          <------ZmHOX2a(1)<-------GAMYB ----MYB52(1) <---------LBD16              --------->HSFB2a(2)    ---------->DOF2 --------->ANAC46   attctcttcgactttcttcgggttacggtgtctcttcagttttttctagagagatgagaacagataaacaaagaggacatgaagacgcgactgttagata  15920200                                                                                      --------->ANAC58                                                                              <---------RAP2.6(3)                                                                   --------->ARR11(3) --------->ANAC46                                                                   <---------GLK1(2)  --------->ANAC58                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            <---------HSFB2a(2)  ----------->HVH21                                                            --------->HSFB2a(2)----------->RAV1(2)                                       --------->ANAC58 --------->RVE1(1)     ------>NtERF2                                    <------ZmHOX2a(2)  <---------ARR11(3)     <---------SPL7                             --------->ATHB12         --------->CCA1(1)      <---------ANAC46                       <----------DOF2 --------->ANAC46--------->ARR11(3)    <---------ANAC58                       <---------DAG2  --------->ANAC58--------->GLK1(2)     <---------ANAC58          <---------ARR11(3)<---------YAB1            --------->RVE1(1)====================RAV          --------->ARR11(3)<---------AHL20(2)      --------->AHL20(2) <-----------RAV1(1)        ---   atttcagatagagttcttcccaatacttttttaattggatcacgcttctcaaaaaaaaatctctcgaaagattatgttgccgtctgacacactactaggc  15920300                                                                                     --------->ATHB12                                                                                     --------->ATHB51                                                                                     <--------ATHB1                                                                                     <---------ICU4       --------->YAB1             <--------P                                        --------->ICU4  --------->At5g28300     <----------DOF2          --------->At4g35610              <---------YAB1 ------>MYB52(1)        --------->At4g35610        <---------At4g35610 <---------HSFB2a(1) <---------ZAT18   tagcggtaatgagaaaatttgaaatgagctataggggtagaacggtatttgtaagcttcaaatagtattgggaacagtcgaatagaataattggggactt  15920400  Previous    Next  AGI:  At1g42460.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G07240.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 15915960    to: 15919925    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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