Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <------ZmHOX2a(1)                         ----------->GT1               <---------ANAC58                            <---------WOX13(1) --------->ANAC58               <---------ANAC46                          --------->ATHB12     --------->ANAC46               <---------ANAC58                         <---------AHL20(2)    --------->ANAC58           <---------ANAC58                        <---------ANAC58   <-----------ARR10    <---------ANAC58                 --------->ANAC58   <---------YAB1<---------ARR11(3)    <---------ANAC58   <---------ARR14(2)          <---------ANAC58   --------->GLK1(2)  --------->ANAC58    <---------ANAC46   --------->ARR14(2)         <---------ZAT18     --------->ARR11(3) --------->ANAC58   xxxxxxxxxxxxxxxx>smallRNA(i)      --------->ANAC58  --------->AHL20(2)    ------>ZmHOX2a(1)    --- --->YAB1  <---------ANAC58          --------->ANAC46 <----------DOF2--------->RVE1(1) ---------->DOF2   taagttgcgagggacttgcgaggagttttcgctattccctcgcaatatgtagtgcgttttaattggtttaaaaatcttcctcgcaatttcaaagcaaact  15871100                                                                       --------->LBD16                                                                      --------->RAP2.6(2)                    <---------AHL20(2)                              --------->ZAT2                    --------->AHL20(1)                    --------->At4g35610                    --------->AHL20(2)               --------->At4g35610                    <---------AHL20(1)               <---------ZAT2 ------>MYB46(1)   --------->TOE2(3)                   --------->AHL20(2)                <---------At4g35610              --------->TOE1(3)               <------ZmHOX2a(1)                     <---------GLK1(1)--------->RAP2.3(2)           <---------ANAC46               --------->ARR11(3)        ------>MYB83--------->TOE1(3)           <---------ANAC58               <---------ARR11(3)        --------->At4g35610           <---------ANAC58------>ZmHOX2a(1)         --------->ZAT2--------->ANAC46  --------->ZAT6 ------>ANAC46----------->GT1       <---------HSFB2a(2)   <---------At4g35610   --------->TOE2(3)   acgcgagggttttgcgaggaaataaattcctatatatactcgaagacctagtttgagctccgctcaaaccagccgcatcaaaccctaaccctaaaaattt  15871200                                       --------->GLK1(1)                                       <---------GLK1(1)                                       <------ZmHOX2a(2)                                      <---------ARR11(3)                                      <---------ARR14(2)                                      --------->ARR14(2)                                      <---------ARR11(1)                                      <---------AGP1                                      <-----------ARR10               <------NtERF2                                     <---------CCA1(2)               <---------ATERF1(1)                                     <---------ARR14(1)              --------->ABI4(1)                                    --------->LBD16                  ------>NtERF2                                   --------->DEAR3(1)               --------->DEAR3(1)                                  --------->ATERF1(1)               <---------ATERF1(2)                                  <------NtERF2                     --------->RAP2.6(2)                                  <---------LBD16                   --------->RAP2.3(3)                                  --------->RAP2.3(1)               --------->ANAC46                                 ------>NtERF2                      --------->RAP2.3(2)                                 <---------ERF1                    --------->ORA47(2)                                 <---------RRTF1(1)                --------->ERF1                                 <---------ATERF1(1)               --------->DEAR4(2)                                 <---------RAP2.6(1)               --------->ATERF1(1)                                 <---------RAP2.3(1)               <------NtERF2                                <---------DEAR3(1)                 --------->RAP2.3(1)                                --------->DEAR3(1)                ------>NtERF2                                <---------RAP2.3(2)               <---------RAP2.3(1)                               --------->ATERF1(1)                <---------ATERF1(1)                               --------->RAP2.3(1)               <---------DEAR3(1)                              <---------ATERF1(1)                --------->DEAR3(1)                              <---------RAP2.3(1)               --------->ATERF1(1)                        ------>ZmHOX2a(2)                      <-----------HVH21                  --------------------->WRI1                  <---------ANAC58             <<<<<<<<<TBF1   <---------DEAR3(1)       <------ZmHOX2a(2)            <<<<<<<<<TBF1   <---------GLK1(2)   --------->GLK1(1)------>ZmHOX2a(2)     <---------ANAC58  <<<<<<<<<TBF1   tcttcgattctcttcttcttctctgatctcttcggcgccggatctcttcttctccgatctaattccgtcgccgcctctcttcttcttcttctctaatctg  15871300                                                          <------NtERF2                                           --------->DEAR3(1)                                           ----------->ARR10                                          --------->ATERF1(1)                                          <------NtERF2  <---------ATERF1(1)                     <---                                         --------->At4g35610                                   ------            <------NtERF2                <---------ATERF1(1)                                   ------           <---------ATERF1(1)           ------>NtERF2   ------>NtERF2                         <-----           --------->ABI4(1)            <---------ANAC46--------->ANAC46                       ======           ------>NtERF2              <---------RAP2.3(1)--------->ABI4(1)                     ------          --------->DEAR3(1)         <---------RRTF1(2) --------->RAP2.3(2)                   -------          --------->RAP2.3(3)        <---------RAP2.3(3)--------->DEAR3(1)                    <------NtERF2          --------->RAP2.3(2)        <---------RRTF1(3) --------->RAP2.6(2)                   ------>NtERF2          --------->ANAC46           --------->ANAC46   <---------ATERF1(2)               ------->GAMYB          <---------ATERF1(2)        <---------RAP2.3(2)--------->RAP2.3(3)               --------->DEAR3(1)          --------->RAP2.6(2)       <---------LBD16    --------->ERF1                     ===========         --------->ORA47(2)         <---------At5g28300--------->ATERF1(1)               --------->DEAR3(2)         --------->RAP2.3(1)       <---------ICU4      --------->DEAR4(2)                --------->MYB46(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         --------->RAP2.3(1)             <---------ARR14(2)         --------->ATERF1(1)       <-----------GT1     --------->ORA47(2)              <---------GLK1(2)         --------->ERF1         <---------ICU4        <---------ATERF1(1)           --------->HSFB2a(2)         --------->DEAR4(2)    <---------AHL20(2)     <---------RAP2.3(1)   ------>ZmHOX2a(2)--------        <---------ATERF1(1)    --------->AHL20(2)    --------->ANAC46 <----------DOF2  --------->ARR14(2)       --------->DEAR3(1)      <---------YAB1<---------GLK1(2)        ===============================    <---------ICU4            --------->AHL20(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------HSFB2a(2)   ttatactcatcgccgcctctcttcttctccgatataattacggcgcagactctcttcgccgcctctcttcttctttgatctgtgctccagaaccgccgcg  15871400 ------CCA1(2) --->bZIP60(2) --->TGA1a ----O2 ========================================bZIP_DOF --->O2                                                                                         ----- -->LBD16 ------>NtERF2         <---------TOE2(3)                      <-----------ARR10      <------ ====MYC_MYB                  ---------->DOF2              --------->ARR11(3)        <<<<<<<<<TBF1 ->DEAR3(1)                --------->TOE2(3)               <---------ARR11(3)    <---------YAB1<----- ====bZIP_DOF             ----------------->AGL1     <------ZmHOX2a(2)<---------CCA1(2)       -------   tctcttcttctccgactcgatatgttttgcctcaaaggtaacctctgtttctccgatctaagttcttctctcaaatctaacttattcttcttctccgatc  15871500                ------>ZmHOX2a(2)                <---------MYB59                                                                   <--               <------ZmHOX2a(2)                                                                  <--              <---------AGP1                                                                   <-----              <---------ARR14(2)                                                        ----------->HVH21              --------->AGP1                      <------NtERF2                        <-----------HVH21              --------->ARR11(3)                 <---------SPL7                       <---------ANAC58          <---------LBD16                        <---------RAP2.6(3)                  <---------ANAC58        <-----------GT1                          <-----------HVH21                    <---------ANAC46    <----------DOF2      --------->ATHB12        ------>NtERF2                    <---------At4g35610 ->ZmHOX2a(2) <---------ARR11(3)                <---------ANAC58                  --------->ZAT2  <-- ---ARR14(2)  --------->ARR14(2)                <---------ANAC58                  --------->At4g35610 -ZmHOX2a(2)  <-----------ARR10                 *TSS       <---------ICU4     ----------->RAV1(1) <-- -->ARR14(2) <---------CCA1(2)                  <---------ANAC46   ------->TEIL  ------->GAMYB<------   ttacttctttttcccagatctaactcttgatttgttttttgtgcaagatgccgtcggataatacttatgtacggtttagacaacagcagcgtgacccgtt  15871600                                                                                       --------->MYB52(1)                                                                                      --------->DEAR3(1)                                          <---------TOE2(3)                         ------->GAMYB         --------------->AGL15            <---------TOE1(3)   --------->MYB46(3)   --------->ANAC58         <---------------AGL15  <-----------RAV1(2)         <-----------GT1        --------->ANAC58 -------ANAC58                  <---------LBD16       <---------TOE1(3)<---------ALFIN1------>NtERF2 -------ANAC58              <---------ARR11(3)       <-----------RAV1(2)      ------>NtERF2 ----MYB52(1)               --------->ARR11(3)  <---------TOE1(3)      --------->AtMYB61 -------AtLEC2              <-----------ARR10  <-----------RAV1(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -------ANAC46       <---------ANAC46  <-------TEIL <-------TEIL  --------->SPL7   --------->ANAC46 -----HVH21<----------DOF2---------->TaMYB80  <-------TEIL<-------TEIL--------->MYB46(3) --------->MYB46(3)   gcatgtcaattctctttttagtggagggaatatctcaggggttcaaggttcaggttcaggttcaaccgttccaccatcgcctccaacgccaacgactcag  15871700                                                                                          --------->DAG2                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                        --------->GLK1(1)          <---------ANAC46         <---------ICU4   ----------->HVH21            --------->ARR11(3)         <---------STY1(2)         --------->YAB1   --------->WRKY12             <---------ARR11(3)  <---------ANAC58        <---------YAB1  <---------At4g35610   --------->ZAT6           ------>ZmHOX2a(1)---------->DOF2        <---------ATHB12<---------ZAT2  --------->GLK1(2)    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      --------->WOX13(1)--------->ZAT2--------->MYB46(3)<---------GLK1(1)  <---------ANAC58   xxxxxxx    <---------MYB52(1)  --------->At4g35610----------->HVH21 ------>ZmHOX2a(1)    --------->STY1(2)   ccttctgttaatcattctgatgttcaagctgaccgtctcaacaatctgacactggaagagctcctcgatagtcctggtcgtgctagcttgaaaaggctag  15871800                 --------->GLK1(1)                 <---------GLK1(1)             --------->LBD16             <---------HSFB2a(2)   <---------At4g35610                  ----------->ARR10             --------->HSFB2a(2)  <---------TOE2(3)                     --------->MYB52(2)            <---------LBD16  ----------->GT1            --------->ARR11(3)            --------->HSFB2a(2)   <---------TOE1(3)    <------MYB83   <---------MYB52(1)     <-------           <---------LBD16  <---------TOE1(3)          <------MYB46(1)<--------P             --------          ------>ZmHOX2a(1) <---------TOE2(3)  <---------HSFB2a(2)  <------MYB83--------->TOE2(3)  --         <---------SPL7   <--------P           --------->HSFB2a(2)  <------MYB46(1)        <------MYB46(1) ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->MYB59<-------GAMYB         <------MYB83 xxxxxxxxxxxxx>smallRNA(fl3)--------->DAG2    <---------LBD16       <---------MYB46(3)    --------->MYB59   acccaaagcgtcctccgggaactctctggtaaggttaagcttatagtctctggaattaggtcttgtaagttggttagttctgccttagaagtttggttct  15871900                                                                           <---------ANAC58                                                                           <---------ANAC46                                                                           <-------GAMYB                                                                           <---------ANAC58                         <---------ARR14(2)                               --------->MYB55(2)                       <---------MYB46(3)                                 <------MYB83                       <------MYB83                                       <---------MYB46(3)                       <---------DEAR3(2)                                 <------MYB46(1)                       <------MYB46(1)                                    --------->MYB52(2)                      <---------AtMYB61                                  --------->MYB111(1)                      --------->MYB59                                    <---------AtMYB61                     <--------P--------->TOE2(3)                        <--------P          <---------LBD16--------->ARR14(2)                          <---------TOE2(3) --ARR14(2)       <---------TOE1(3)               --------->TOE2(3)  <---------TOE1(3) ->ARR14(2)       <---------TOE2(3)            ------>ZmHOX2a(1)     --------->MYB59             <--- ------->TOE2(3)  --------->MYB59        --------->MYB59     <---------LBD16<---------------AtSPL8   gccttagaagtctctggatttaggttggttctgccttagaattttggtcctgccttagaagtctctggatttaggttggttgtacttagcattgtagttt  15872000  Previous    Next  AGI:  At1g42410.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 15871548    to: 15873894    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version