Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->At4g35610                                                 <---------At4g35610          --------->ATHB12         --------->ARR14(2)          --------->YAB1           <---------ARR14(2)         <---------ATHB12        <---------MYB46(3) <---------At4g35610       --------->ZAT14   <---------HSFB2a(2)    ========================bZIP_DOF               --------->ZAT18 ---------ARR14(2)        <---------ANAC58      <---------MYB46(3)       --------->ZAT14 -------->ARR14(2)        <---------TGA1a       <-----------RAV1(1)      <---------ZAT14  ------>ZmHOX2a(1) -------MYB46(3)    --------->ANAC58         --------->ARR11(3)         XXXXXXXXXXXXXXXXXXXX>MIR171A ----MYB46(1)       --------->ANAC58   <----------DOF2   --------->GLK1(1)    <---------ZAT14 ----MYB83-------->ATHB1  <---------ANAC58 <---------TOE2(3)        ----------->HVH21     =========== -->ATHB12<---------ICU4  --------->TGA1a  <---------TOE1(3) <-----------GT1  --------->ZAT18   tggttctgcaaatcattgtggcaagcagtcgtgagtggttcctttaaggtctggtgctgaattctactctctgactgaactacactaacatcctctctat  15853400                              --------->SPL7                 ------>ZmHOX2a(1)                                        <-----------ARR10   --------->LBD16          <---------SPL7                  ----------->RAV1(2) =======================HOX2a_HOX2a     --------->WOX13(1)  <---------O2  --------->GLK1(2) ------>ZmHOX2a(2)         --------->TOE1(1)         <-----------TGA1    <---------GLK1(2) =======HOX2a_HOX2a        --------->TOE2(1)  <---------MYB52(1)---------->ID1                     --   tgatccgagcattcaagtcctaaacttcatcgtacagactatcaatccgttgattcgtcatcacttggcccttaagaatctattctagcatgtattccat  15853500                          <---------ANAC58                       --------->ZAT18                      --------->ALFIN1                    --------->ALFIN1                   --------->MYB55(2)                                         --------->ZAT14                   <---------MYB46(3)                                        <---------ANAC46               --------->ALFIN1                                              <---------REM1(1)             <---------ANAC46                                              <---------ANAC46             <------MYB46(1) <------MYB46(1)                              --------->ALFIN1          -             <------MYB83 <---------ANAC58                                <------NtERF2             -            --------->MYB55(2)                                          <---------ANAC58            -            <---------MYB46(3)                                          <---------ANAC58           <-           --------->ALFIN1  <------MYB83                               <---------ANAC46   <---------AHL20(2)   --------->YAB1 <---------ANAC46               --------->ICU4     <-----------RAV1(2)    --------->AHL20(2) ---->ZmHOX2a(1)<---------MYB46(3)        --------->At4g35610     <-----------HVH21     ----------->GT1   cctaatcgtagaagtgggtggagggtgggcttggtgactagaatagctggaatgactagcatagaacatatcaggcgtggtgtagtcatctagttaaata  15853600                                                         <---------AtMYB61                                                         --------->ALFIN1                                                       --------->ZAT2                                                     <-----------RAV1(2)                            <---------ARR14(2)    ------>NtERF2                            --------->ARR14(2)   <---------ALFIN1                               <----                     <---------At4g35610      ----------->HVH21                                 ----- -------->ANAC58     <---------ZAT2       <---------ANAC58                                  <-------- -------->ANAC46     --------->At4g35610  <---------ANAC58                                ------->TEIL -------->ANAC58     --------->ZAT2       --------->ETT(2)         ------>ZmHOX2a(2)   --------->ANAC55(2) --------ZAT18 --------->At4g35610       <------NtERF2 <---------ZAT2                  <---------ANAC55(2)   gcacgcccttctgcaatagctgcagctctgtattcgccttggtgtcgagcgacacccaggtggtctcgatcgtcacaatcggcaaaatcatgtatcaggt  15853700                                    <---------AtLEC2                            --------------------->WRI1                          ------>ZmHOX2a(1) --------->ZAT2                       ------>MYB46(1)      <---------At4g35610                       ------>MYB83 <---------ANAC58                                        <--------                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->ARR11(3)                     --------->AtMYB61      --------->At4g35610 ------>ZmHOX2a(1)        <---------ARR11(3) -----GLK1(1)       --------->MYB46(3)      <---------ZAT2--------->ZAT6             --------->YAB1 ---->GLK1(1)    <---------ETT(1)   <---------ANAC58 --------->TOE2(3)           <---------YAB1 <---- ---RAV1(2)   <-----------GT1     <---------YAB1     --------->TOE1(3)         <-----------GT1*TSS  -   ttccctactcatcgattttccgaccatcctcgttgtatgcttggccagctctctcccttaacactcctacagaaacaggtattactatcaacatctttgt  15853800                                     ------------------------>ANAC81                               --------->ANAC58                               --------->ANAC58  ---------->DOF2                                    <                           ------------------------>ANAC81                                          -   <------------CBF   ------>ZmHOX2a(1)   ------------------------>ANAC81  ------>NtERF2       ------ --DOF2               --------->LBD16<----------ID1   ---------->DOF2     <---------ALFIN1  --------- -------RAV1(1)     ----------->RAV1(2)  ---------->DOF2       <---------ZAT6               --------- ----------->CBF <---------At4g35610------------------------>ANAC81---------->DOF2       <---------REM1(1)   gttgcaattgaatttttgaagctcctgaaacacaagaaaacgaaaaagaagaaaagaaaagtctagacttaaatcgacacctagtctaatggtgaagcaa  15853900                ------>NtERF2               --------->DREB2C(2)               --------->DEAR3(1)       ------>NtERF2       --------->LBD16       --------->ANAC46      --------->ANAC46      --------->LBD16     --------->LBD16     <---------LBD16   ------>ZmHOX2a(2)  <------ZmHOX2a(2) <---------ARR11(3) --------->ARR14(2) <---------ARR14(2) --------->ARR11(3)                                                                      <------ZmHOX2a(2) ---------GLK1(1)                                                                      <------ZmHOX2a(1) -------->GLK1(1)                                                                    <---------TOE2(3) ---->DOF2  <---------ALFIN1                   --------->At4g35610         <---------MYB52(1) >ANAC58  ----------->RAV1(1)                  <---------At4g35610        <XXXXXXXXXXXXXXXXXXXXMIR868 >ANAC58<------NtERF2                         <---------TOE1(3)   --------->ARR11(3) <---------TOE1(3)   agagatccccggcaacaccgccaaatttgatatagctcaaattgccttaagcttactctctcaaataagagctcgtcgttagcacttaaggatcaaattc  15854000                                        --------->WOX13(1)                                  --------->ATHB12                 --------->ANAC58 <---------ICU4                                   --------->ANAC58   --------->ZAT2--------->ANAC58--------->ICU4                                    --------->ANAC58   <---------At4g35610         --------->YAB1                                    ---------->DOF2   --------->At4g35610        <---------YAB1 <---------TOE2(3)              ---------->DOF2   ------- --------->ZAT14 --------->ANAC46<---------YAB1                 --------->AHL20(2)--------->DAG2    -   cactgagctctcgatgttcacacaatagacttatgatgatttcaattaagctagaccaatagattataaaataagaaataaagaaaagcaatataggtga  15854100                                                                           <------MYB46(1)                                                               --------->HSFB2a(2)                                                               --------->HSFC1(1)                                                               <---------HSFB2a(2)                                                              ------>ZmHOX2a(2)                                                              ----------------->AGL3                                                             <------ZmHOX2a(2)                                                            <---------AGP1 <------MYB83                                                            <---------ARR14(2)                -------                                                            <---------ARR11(3)                -------                                                            --------->ARR14(2)                <------              <------ZmHOX2a(1)            <------ZmHOX2a(1)--------->AGP1 ----------->GT1<----------DOF2        <---------YAB1 <-----------RAV1(2) ==========================HOX2a_HOX2a       <---------TOE1(2)        <---------TOE2(3)                  =========================HOX2a_HOX2a        ------->TEIL ---->HVH21--------->CCA1(2)  <---------ANAC46              --------->ARR11(3)  <---------YAB1<------ ---------->GT1 ---------->DOF2<---------TOE2(3)   <---------YAB1      <---------STY1(2) <---------DAG2   aggtgtaaataagataggaaaagagtcaggtttagggtattcttaggagatagatgatagtagatctagaaatagctaggttattatcgcacctttctcg  15854200                                                                                      ------>ZmHOX2a(1)         --------->YAB1                                                      --------->LBD16        <---------YAB1                                                   --------->GLK1(2)    <------ZmHOX2a(1) -->HSFB2a(2)                                                   --------->MYB52(1)   --------->TOE2(3) -->HSFC1(1)              --------->ALFIN1                   --------->At4g35610 <---------GLK1(1) ---HSFC1(1)              <---------AtMYB61                  <---------At4g35610 --------->GLK1(1) ---HSFB2a(2)    <---------ZAT6     --------->ANAC46   <---------ZAT6<------ZmHOX2a(1)<--------------   aactcaaactataattttagagtaaccagtggtgttctgcgaaactctctatacttagagttcagataacaggagaagccgagaaatcctaaaacaggag  15854300  Previous    Next  AGI:  At1g42377.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15851674    to: 15853794    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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