Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->REM1(2)                                                                  --------->TOE2(3)      --------->ZAT14                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           <-----------HVH21             <---------ZAT14                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxx                                    --------->TOE1(3)--------->At4g35610                <---------ANAC46                                    --------->TOE2(3)<---------At4g35610     <----------DOF2 <-------        --------->AtLEC2   --------->GLK1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ALFIN1 -------->YAB1            <---------GLK1(2)         <-----------HVH21    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------ICU4          --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ANAC58xxxx ------->ICU4           --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58<--- --->ZAT14      ---------->DOF2  <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->ALFIN1   actcatgaccatgcacagaaaatcgcaagaatcccaaaccttcacaatccaactcatcagaggtcataccttggtagagctttacttgcagtgtggagag  15840800                                                                                 <---------ARR11(3)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <-----------RAV1(2)                                           ---------->DOF2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    --------->ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)                                    --------->ANAC58          <----------DOF2    --------->ARR11(3)                                    --------->ANAC46         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  ---------->DOF2      ----------->HVH21        xxxxxxxxxxxxxxxxxxxxx                                 --------->ARR14(2)  --------->At4g35610  --------->At4g35610                               xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------LBD16         <---------At4g35610 --------->ALFIN1 xxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxx --ANAC46              xxxxxxxxxxxxxxxx>smallRNA(i)<---------HSFB2a(2) <---------At4g35610--------->MYB46(3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ARR14(2)<-----------RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxx   gaattgtattgtctcatcttcatatgctacatacggataagccatcaaagtgtccagatgacaactttggtacaggtgctgaacatcttccaacaatccg  15840900                                                                                                 <---                        <---------GLK1(1)                                                        ----                        --------->GLK1(1)                                               <---------ANAC46                       --------->ARR14(2)                                               --------->ETT(1)                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxx                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <-----------RAV1(1)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            xxxxxxxxxxxxxxxxxxxxxxx             --------->ALFIN1                                                 --------->ANAC58   <---          --------->MYB59     ------->PIF5                      --------->YAB1--------->ANAC58   ----          <---------AtMYB61   <-------PIF5             xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC58 >smallRNA(si3) --------->ANAC58                       ---------->DOF2  ------>ZmHOX2a(1)   <-------- >smallRNA(se3) --------->ANAC58                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------- xxxxxxxxxxsmallRNA(i2)<---------ARR14(2)        <---------At4g35610   --------->TOE2(3)<---------ANAC58 xxxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->At4g35610  <-----------------AGL1<--------   agttgtgcaagtgaggtcgagcaaggatacctcgtgctacagaactcattcagcttgaaaagcctaacatattcctcagtaggcaatatgtcgggcttgt  15841000       <------MYB46(1)       <------MYB83      --------->MYB111(1)      --------->MYB111(2)      --------->MYB59      --------->MYB46(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ZAT14 ----->ZAT18 xx>smallRNA(i) >smallRNA(se3) ------ZAT18 ----->ZAT14        --------->GLK1(2)         <---------ALFIN1                                      < -ANAC58   --------->At4g35610              ------>ZmHOX2a(1)                                 ------>ZmHOX2a(1) -ANAC58   <---------At4g35610      ------->TEIL                             <-----------HVH21<------ -ANAC46 <--------P <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3) <---------CCA1(2)    <----------DOF2   gcagaagtttggtagctctgcgagtctgttcaggcatgtactcgtcctccacatcttcgtctataagctcatacctctctgtcatcgctctctttcctcg  15841100                                                                                                   --                                                                                                 <xxx                                                                                                -----                                                                                               <xxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------HSFB2a(2)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->HSFB2a(2)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <---------At4g35610                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ZAT2                                             --------->GLK1(2)           <------ZmHOX2a(2)       <---------ZAT2        <---------GLK1(2)                   <---------ARR14(2)          <-------       --------->At4g35610   <---------ARR14(2)                  <---------GLK1(2)          <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)                <---------YAB1      <---------REM1(1) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ZAT14       ----------->TGA1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---LBD16<----------DOF2  --------->YAB1                  <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)   ggctatctcagctttccttctgaaactttcatattctctctgttctctctctagccttgaagatgacgattctgtctcatccatgttgtagtcaggatca  15841200               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <------------AtMYB77    --------->ARR11(3)                                                                        xxxxxxx    <---------ARR11(3)          ----------->RAV1(2)                                     ------------>CBF    --------->ARR14(2)     <---------GLK1(2)                                           --------->ANAC58    <---------ARR14(2)   --------->ICU4                                                --------->ANAC58 ----->GAMYB  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  --------->CCA1(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  --------->ARR14(2) ------>RAV1(1)<---------YAB1*TSS                                         --------->MYB52(2)<-------- xxxxxxxxxxxsmallRNA(i)  <---------YAB1                         ------------>CBF---------->DOF2     < --ARR11(3)   --------->At5g28300 ------>ZmHOX2a(1) ---------->DOF2     <--------P  <---------ARR14(2)   acagaagaactgccactgtaattgctcatgattctcctgtagggatttagaactcaaagctcaaatgtcaataggttagtctcaaagataggcaatgaaa  15841300                                                    --------->ZAT2                                                    <---------ZAT2                                                    <---------At4g35610                                                 --------->LBD16                                                 ------>ZmHOX2a(1)        --------->ARR11(3)                                               ----------->RAV1(2)        <---------ARR14(2)      ---                                         <---------At4g35610              <---------ARR11(3)    <----                                     --------->TOE1(3)                    <-----------ARR10     <----       --------->DAG2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->GLK1(2)     xxxxx     ---------->DOF2   <---------ANAC58  --------->At4g35610              --------->ARR14(2)    <---- <---------WOX13(1)    <---------ANAC58  <---------ZAT2            ------->TEIL              -------- xxxxxxxxxxxxxxxx>smallRNA(fl3)     ----------->RAV1(2)  --------->At4g35610                --------- -ATHB12    <---------------AtSPL8 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------CCA1(2)  xxxxxxxxx ------------CBF------------>CBF  <---------ARR14(2)--------->At4g35610 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   cagattgaaaaggtcgagtacaatttcgtactcgagtaacctgagctgttcctgagcttagatgaaatgaatcgagtatcttctcagaggtcgagttggg  15841400     <---------At4g35610     --------->At4g35610     <---------ZAT2                                          <---------ANAC58   <-----------RAV1(2)                                       <---------ANAC58 ------>ALFIN1                                              --------->HSFC1(2) -----ANAC58                                                <---------HSFC1(2)--------->HSFB2a(1) -----ANAC46                                               ----------->ARR10  <---------HSFC1(2) xxxxxxxxxxx>smallRNA(s)                           <---------MYB46(3)         <---------HSFB2a(1) -----ANAC58                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxx ->ALFIN1                      ----------->GT1    <---------ZAT6           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >ALFIN1                 <---------ZAT6           <---------AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxx>smallRNA(s)<---------ANAC46      ---------->DOF2  <-----------ARR10 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gtgcttcagcaggtcgagtgagtcgtagagatagagtgaatcgtgaaagctagtggtcgagtagcttctctgaagttggaaggctctactgaattcacga  15841500                                                                                <-----------HVH21                                                                                <-------GAMYB                                                                               <---------MYB46(3)                                                                               <---------DEAR3(2)                                                                              <---------At1g77200                                                                             <------NtERF2                                                                             --------->ATERF1(1)                                                                            ------>NtERF2                                                                            <-----------HVH21                                                                           --------->DEAR3(1)                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                         <---------RAP2.3(1)                                                                         <---------ATERF1(1)                                                                        <---------DEAR3(1)                                                                       --------->SPL7                                     <-----------RAV1(2)               --------->RAP2.6(3)                                  <----------DOF2                      <---------ORA47(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------ZmHOX2a(1)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         ----------->HVH21                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <------NtERF2<---------DEAR3(1)               --------->ATHB12  <---------ANAC58               <---------DEAR3(2)                  <               <---------ICU4    <---------ANAC58       <---------HSFB2a(2)<---------DEAR3(1)   -----              <---------YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------DEAR3(1)             ------- ---------->DOF2    <-----------RAV1(2) <------ZmHOX2a(1)     --------->RAP2.6(3)       ------------- xxxxxxxxxxxxsmallRNA(i) <-----------HVH21              --------->HSFB2a(2)<---------ANAC46  xxxxxxxx   acaagaagccgagtagattattgcaggggtcgagtgctttcaggaggtcgagtgacttcttgaagtcggctaggacggcgtcggtcgagtgcctctacga  15841600                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <--                                           <---------MYB46(3)                                     <--                                          <--------P                                              <--                                         <-------GAMYB                                            <--                                        --------->MYB55(2)                                       <---                                        <---------MYB46(3)                                      <----                                        <---------DEAR3(2)                                    <------MYB46(1)                                     <---------DEAR4(2)                                       <------MYB83                                     <---------RAP2.3(1)                                     <-------                                    <---------RAP2.3(2)                                      --------   ---------->DOF2  <---------MYB52(1)<------NtERF2                                          <-------   xxxxxxxxxxxxxxxx>smallRNA(s)     <---------DEAR3(1)                                     <---------ANAC46 --------->LBD16 ------>ZmHOX2a(2)  <---------RAP2.3(3)                                  <---------MYB46(3) ---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->LBD16                      <---------bZIP60(2) ------>HVH21<---------ETT(2)     --------->CCA1(2)               --------->ARR14(2)  <---------ANAC46 -->ANAC46   --------->ETT(2)---------->DOF2   <---------LBD16 <---------ANAC46     --------->ZAT14-- ---->AGL1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC46  <---------ARR14(2)<---------ZAT14<- xxxxxxxx>smallRNA(s)   <----------DOF2<---------DEAR3(1)<---------AtMYB61          --------->ZAT18<-   gaccgggaagcgaggtcgatcggtttcttttgaaagagacggcggttgatgcggatgaattggtcgagtatatggaaggaatcgagtgaagtggtttggt  15841700  Previous    Next  AGI:  At1g42370.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila) Range:  from: 15839370    to: 15841229    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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