Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->TOE2(3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               <-----------HVH21                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->TOE2(3)<---------At4g35610                        --------->TOE1(3)--------->At4g35610                   <---------ZAT14               --------->GLK1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->REM1(2)              <---------GLK1(2)         <-----------HVH21        <----------DOF2            --------->ANAC58       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------ANAC58<------ZmHOX2a(1)    ---------->DOF2  <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------ZAT6 ---->AtLEC2--------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58xxxxxxxxxxxxxxxx   gcacagaaaatcgcaagaatcccaaaccttcacaatccaactcatcagaggtcataccttggtagagctttacttgcagtgtgaagaggaattgtattgt  15828600                                                                     <---------ARR11(3)                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                         <-----------RAV1(2)                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               ---------->DOF2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        --------->ANAC46            xxxxxxxxxxxxxxxx>smallRNA(i)                        --------->ANAC58          <----------DOF2    --------->ARR11(3)                        --------->ANAC58         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      ---------->DOF2      ----------->HVH21        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->ARR14(2)  --------->At4g35610  --------->At4g35610                   xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <---------LBD16         <---------At4g35610 --------->ALFIN1                <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           xxxxxxxxxxxxxxxx>smallRNA(i)<-----------RAV1(2) <---------At4g35610--------->MYB46(3)  <--       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxx xxxxxxx>smallRNA(i2)<---------ARR14(2)<---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ---   ctcatcttcatatgctacatacggataagccatcaaagtgtccagatgacaactttggtacaggtgctgaacatcttccaacaatccgagttgtgcaagt  15828700                                                                                               <-----                                                                                               <-----                                                                                     <---------ZAT14            --------->GLK1(1)                                                        <---------ZAT18            <---------GLK1(1)                                               <---------ANAC58  -------           <---------ARR14(2)                                               <---------ANAC58  -------           --------->ARR14(2)                                              xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <-----------RAV1(1)  -------         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->ANAC58   --------->ZAT18     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    --------->ANAC58                                --------->YAB1--------->ANAC58   --------->ZAT14    --------->ANAC58                       xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ETT(1)  ------- --------->ALFIN1                          ---------->DOF2  ------>ZmHOX2a(1)   <---------ANAC58   <- -------AtMYB61   <-------PIF5          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ANAC58   -- xxxxxx>smallRNA(le3)                --------->At4g35610   --------->TOE2(3)<---------ANAC46xxxxxxxxx ------>MYB59     ------->PIF5       <---------At4g35610  <-----------------AGL1<---------ANAC46 <---   gaggtcgagcaaggatacctcgtgctacagaactcattcagcttgaaaagcctaacatattcctcagtaggcaatatgtcgggcttgtgcagaagtttgg  15828800 -MYB83 --------->GLK1(2) -MYB46(1) -->MYB46(2)                                                                                   <----- -->MYB59                                                                                      <----- -->MYB111(2)                                                                                  ------ -->MYB111(1)                                                                            <xxxxxxxxxxx --------At4g35610                <---------ALFIN1                                <---------LBD16<--- ------->At4g35610      ------->TEIL                                         <----------DOF2   ------ xxxxxxxxxxx>smallRNA(le3)      ------>ZmHOX2a(1)                <-----------HVH21------>ZmHOX2a(1) -----P <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ARR11(3) <---------CCA1(2)<----------DOF2<xxxxxxxxxxxx   tagctctgcgagtctgttcaggcatgtactcgtcctccacatcttcgtctataagctcatacctctctgtcatcgctttctttcctcgggctatctcagc  15828900                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                       ------->GAMYB                                                                                     <xxxxxxxxxxxxxxx                                                                                    ----------->RAV1(1)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      --------->GLK1(2)           <------ZmHOX2a(2)     --------->HSFB2a(2)                             <---------GLK1(2)           <---------ARR11(3)     <---------HSFB2a(2)                             <---------ARR14(2)         <------ZmHOX2a(1) ----At4g35610                                     <---------YAB1      <---------REM1(1)    <-------- ----ZAT2        --------->ARR14(2)             ----------->TGA1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --->ZAT2     <---------ANAC58          <----------DOF2        <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxsmallRNA(i)<---------ARR14(2)    <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------DOF2  <---------ANAC58         <---------ANAC46       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --->At4g35610<---------ANAC46         <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(fl3) --------->ZAT14     <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(s) <------   tttccttctgaaactttcgtattctctctgttctctctctggctttgaagatgacgattctgtctcatccatgttgtagtcaggatcaacagaagaactg  15829000   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 <---------WOX13(1)   <---------YAB1                                                                 xxxxxxxxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     ------------>CBF  --------->At5g28300                                                      --------->ANAC58 >ARR11(3)          ----------->RAV1(2)                                    --------->ANAC58 -ARR11(3)       *TSS                                                    --------->CCA1(2) >ARR14(2)   --------->ICU4                                             --------->ARR14(2)     ------ xxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)                       --------->MYB52(2)<---------ATHB12    < -ARR14(2)   <---------YAB1                         ------------>CBF---------->DOF2     <------------CBF ------AtMYB77 <---------GLK1(2)        ---------->DOF2     <--------P  <---------ARR14(2)   --------   ccactgtaattgctcatgattctcctgtagggatttagaactcaaagctcaaatgtcaataggttagtctcaaagataggcaatgaaacagattgaaaag  15829100                                        --------->At4g35610                                        <---------ZAT2                                       <-------                         --------->TOE1(3)                                                   <-------                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       --------            <---------SPL7              <---------At4g35610   <-----------ARR10            <---------            --------->LBD16          ------>ZmHOX2a(1)        <---------ARR11(3)      --------->ALFIN1           <---------ANAC46  <---------At4g35610              --------->ARR11(3)    <---------ANAC46           <---------ANAC55(2)       --------->LBD16          --------->GLK1(2)     xxxxxxxxxxxxxxxx>smallRNA(s)           <---------ANAC58  <---------ZAT2                   --------->ARR14(2)    <---------ANAC58    ------------>CBF    ----------->RAV1(2)  --------->At4g35610                    <---------ANAC58 xxxx>smallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2) --------->ALFIN1 --->DAG2  <---------ANAC58  --------->At4g35610             <---------CCA1(2)  --------->ALFIN1 ---------------AtSPL8<---------ARR14(2)--------->ZAT2      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -->DOF2   --------->ANAC55(2)     ----------->RAV1(2) ------->TEIL             xxxxxxxxxxxxxxxx>smallRNA(s)   gtcgagtacaattccgtactcgagtaacctgagctgttcctgagcttagatgaaatgaatcgagtatcttctcagaggtcgagttggggtgcttcagcag  15829200                                                 <---------ANAC58                                                 <---------ANAC58                                                <---------HSFC1(2)                                                --------->HSFC1(2)<---------HSFC1(2) <---------ANAC46                              ----------->ARR10  --------->HSFB2a(1) ----------->GT1                       <---------MYB46(3)         <---------HSFB2a(1)    ---------->DOF2 --ZAT2                               <---------ZAT6           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --At4g35610                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxsmallRNA(i) ->At4g35610       ----------->GT1    <---------AtMYB61<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --RAV1(2)   <---------ZAT6   ---------->DOF2  <-----------ARR10 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gtcgagtgaatcgtagagatagagtgaatcgtgaaagctagtggtcgagtagcttctctgaagttggaaggctctactgaattcacgaacaagaagccga  15829300                                                                    <-------GAMYB                                                                    <-----------HVH21                                                                   <---------MYB46(3)                                                                   <---------DEAR3(2)                                                                  <---------DEAR3(1)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                ------>NtERF2                                                                <-----------HVH21                                                               <---------DEAR3(1)                                                              --------->ATERF1(1)                                                              <------NtERF2                                                             <---------ATERF1(1)                                                             <---------RAP2.3(1)                                                            <---------DEAR3(1)                                                           <---------ORA47(1)                         <-----------RAV1(2)               --------->RAP2.6(3)                      <----------DOF2                      --------->SPL7              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <------ZmHOX2a(1)                ----------             <-----------HVH21                           ----------->HVH21                 xxxxxxxxxx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <------NtERF2<---------At1g77200    --------->LBD16          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------DEAR3(2)                  <---------LBD16        <-----------RAV1(2) <------ZmHOX2a(1)     --------->RAP2.6(3)               ----------->HVH21   <---------ICU4    <---------ANAC58       <---------HSFB2a(2)<---------ANAC46   --------->ANAC46   --------->ATHB12  <---------ANAC58       --------->HSFB2a(2)--------->DEAR3(1)xxxxxxxxxxxxxxxx>smallRNA(s)  <---------YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------DEAR3(1)       ----------------->AGL1  x   gtagattattgcaggggtcgagtgctttcaggaggtcgagtgacttcttgaagtcggctaggacggcgtcggtcgagtgcctctacgagaccgggaagcg  15829400                                                                                           <---------LBD16                                                                                          --------->MYB52(1)                                                                                          <---------WRKY18(1)                                                                                         ----------->HVH21                                                                                       --------->At4g35610                               <---------MYB46(3)                                     <------MYB83                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <------MYB46(1)                              <--------P                                              <---------MYB46(3)                             <-------GAMYB                                            <---------DEAR3(2)                            --------->MYB55(2)                                       <---------DEAR3(1)                            <---------MYB46(3)                                      <---------ORA47(1)                            <---------DEAR3(2)                                    <------MYB83                         <---------RAP2.3(1)                                      <------MYB46(1)                         <---------DEAR4(2)                                      <---------AtMYB61                        <---------RAP2.3(3)                                      --------->MYB59            <----------DOF2<---------DEAR3(1)                                    <---------MYB46(3)     ------>ZmHOX2a(2)  <---------RAP2.3(2)                                    <---------ANAC46   <--    <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->LBD16                         <---------MYB46(3)  ---- <---------ETT(2)       <---------DEAR3(1)                                <---------bZIP60(2)  <----- --------->ETT(2)---------->DOF2   <---------LBD16    <---------ARR14(2)  <---------ANAC46xxxxxxxxxxx >DOF2  <---------MYB52(1)<------NtERF2            <---------ANAC46     <---------ZAT14<-------GAMYB xxxxxx>smallRNA(s)   --------->CCA1(2)      <---------AtMYB61       <---------ANAC55(2) --------->WRKY12 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ANAC46  --------->ARR14(2)--------->ZAT14<---------At4g35610   aggtcgatcggtttcttttgaaagagacggcggttgatgcggatgaattggtcgagtatatggaaggaatcaagtgaagtggtttggtcggttgacggag  15829500  Previous    Next  AGI:  At1g42360.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15827167    to: 15829017    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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