Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ZAT6                          <---------ALFIN1                        ---------->ID1                        ------>MYB46(1)                       <---------ANAC58                        ------>MYB83                          <---------ANAC55(1)                       ----------->HVH21                      <---------ANAC55(2)                      <---------MYB59                         --------->ANAC55(2)                 ---                --------->LBD16                          --------->MYB52(2)                      ----               --------->LBD16                   --------->DOF5.7(2)<----------DOF2   --------->ANAC46              --------->LBD16        <---------ICU4   <----------DOF2 <---------AHL20(2)        <----             <---------LBD16        <---------MYB52(1)--------->TOE2(3)              <---------At5g28300    --------->LBD16 --------->ARR11(3)    <---------ANAC58    <---------ANAC58      <-----------GT1 -    xxxxxxxxxxxxxxxx>smallRNA(i)    --------------------->WRI1<---------ANAC46<---------ANAC58  <----  <---------LBD16   <---------ARR11(3)    <---------ANAC58  <-----------GT1   <---------ANAC58  -----   gacatccggagaaacccccgaagacctaacacttctcccttattgcttatcgtttactttagttacttgtcttttattttgcttattcactgcatacaac  15823400                                                                                   --------------->AtSPL3                                                                                  ---------->DOF2   <---------ALFIN1   <---------TOE1(2)                                        --------->YAB1 ----->P<----------DOF2                            --------->ZAT14             ------>ZmHOX2a(2) --->GAMYB<---------AHL20(2)                       <---------ZAT14      <---------ARR14(2) -----MYB111(2)      ------>ZmHOX2a(1)      --------->GLK1(1)           --------->ARR14(2) ------>GAMYB   <------MYB83                <---------GLK1(1)         <---------ZAT18 -----MYB55(2)  <------MYB46(1)           <------ZmHOX2a(1)       ------>ZmHOX2a(1)--------->DAG2 ---->MYB46(3) --------->MYB59        ---------->DOF2             ====================HOX2a_HOX2a ---   aaccccctctcttttatttggtcctagcttcactctcttctaaaggatttctctgaactacttctctcctagtggattcgatcgtaaagtactactccga  15823500                   <---------ANAC46                   <---------ANAC58            xxxxxxxxxxxxxxxx>smallRNA(i)         ------->PIF5         <-------PIF5         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                        <---------ALFIN1       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ANAC46     <---------ZAT18            <---------TOE1(3)     --------->ANAC55(2)     --------->ZAT18        <----------DOF2           --------->ANAC58     --------->ZAT14   <---------AtMYB61              --------->ANAC58                --------->HSFB2a(2)     <---------ZAT14 <---------ANAC46                 <---------ANAC55(2)             <---------HSFB2a(2) ------>AHL20(2)   <---------ANAC58                   --------->ANAC55(1)  <---------At4g35610   tataatgtgcacttgcagtagtcgtgtggtctttcaggtatgaggcgaaatgaaacacgcatcaattccccatcttctgctactccctctggaatgtatt  15823600                                                                                  --------->WRKY12                                                                                <----------DOF2                                                                            ------->GAMYB                                                                           <---------ALFIN1                                                                          ------>MYB46(1)                                                                          -------->P                                                                          ------>MYB83                                             ----------->GT1            --------->AtMYB61                                          --------->GLK1(2)            --------->MYB46(3)                <----------DOF2       --------->YAB1                  >>>>>>>>>>MYB80      <----------DOF2         --------->MYB46(3)                   <---------AHL20(2)      <---------TOE2(3)   gagtctctcttttctgcccttttaagagtagaacaacctttcacaatctgtaaaactccatcttgagatttaaaccaacaccctttgacttctaatgttc  15823700                                                                                                 ----                                                                                            ---------                                                                                            <--------                                                                                           <---------                                                                                           <---------                                                                                           <---------                                                                                         <-----------GT1                  <-----------------AG                                                  --------->DOF5.7(2)              <---------ANAC58                                                     ------>ZmHOX2a(2)              <---------ANAC58       <---------YAB1             *TSS       ---------->DOF2 <---------           <---------GLK1(1)       --------->YAB1           --------->At4g35610   <------ZmHOX2a(2)   <---------ARR11(3)            ------->TEIL               <---------At4g35610  --------->ARR11(3)   --------->ARR11(3)    --------->MYB59                   <---------TOE1(3)     <---------ARR11(3)  --------->YAB1  =================================================================================== <---------ATHB12 <-----------------AGL1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)----------   ccaatgatattagatttcttgtcatattaggcatgtatcatgatatagctcaaattgccttaagcttactccctcaaaaaagagatcgtcgttaccactt  15823800                                                                                                  <xx                                                                                                  <xx                                                                                                  <xx                                                                                                <----                                                                                                xxxxx                                                                                          <---------ICU4                                                                                          --------->YAB1                                                                                         <---------ATHB12                                                                                        ------>MYB83                                                                                        ------>MYB46(1)                                                                                       --------->WOX13(1)          --------->ATHB12                                                            <xxxxxxxxxxxxxx         <---------AHL20(2)                                                          <xxxxxxxxxxxxxxx         <---------YAB1                               --------->YAB1                <xxxxxxxxxxxxxxxx ----->MYB52(1)                                      <---------YAB1                <xxxxxxxxxxxxxxxxx ------>AGL15                                      --------->YAB1                 <xxxxxxxxxxxxxxxxxx -------AGL15                                    <---------WOX13(1)              <xxxxxxxxxxxxxxxxxxx --------AGL3                  ------------>CBF <------------CBF                 <xxxxxxxxxxxxxxxxxxsmallRNA(se3) --------AGL2                 --------->ANAC58 --------->ATHB12                  <xxxxxxxxxxxxxxxxxxx --------AG<------------CBF   --------->ANAC46<---------YAB1                     <xxxxxxxxxxxxxxxxxxx --------AGL1   <---------At4g35610         --------->YAB1                     <xxxxxxxxxxxxxxxxxxxxx ========MADS_MADS            --------->ANAC58--------->ICU4                   <xxxxxxxxxxxxxxxxxxxxx ------->AGL3   --------->At4g35610        <---------YAB1                     ------>ZmHOX2a(1) <xxxx   aagggtcgaatttcattgagctctcgatgttcacacaatagacttatgatgattgataataagtttttaagtcaattgtcctaaaacaccaatcatgtcg  15823900                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               --------->ALFIN1                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxx                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx                           <---------ANAC58                                        xxxxxxxxxxxxxxxxxx                           <---------ANAC58                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------ATHB12                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxx>smallRNA(i)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->AtLEC2                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->ANAC46                         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  --------->ANAC58                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------TOE1(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->WRKY18(1)         --------->MYB59xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ARR11(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->YAB1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->WOX13(1)     <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->MYB46(3)     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---GAMYB<---------TOE2(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58 xxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i)<---------ATHB12   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <----- xxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <----- xxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx xxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <----- xxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-------- xxsmallRNA(le3) --------->WOX13(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC58xxxxxxxxxxxxx   ttgtagtattttaggttgtcaatccaaatgggtgtgatgctaacaatcaagatgtgatcagaagtcactaagtcaagccaagcaataacaggttttggtg  15824000                                                                   <---------ALFIN1                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                 ----------->RAV1(1)   -------->P                                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------GT1                                               --------->AtMYB61 xx>smallRNA(i)                                                --------->MYB46(3)  --------->ZAT18 xxxxxx>smallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxx>smallRNA(s) >smallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxsmallRNA(s) ----ANAC58------>ZmHOX2a(1)                                 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxx>smallRNA(le3)                                     <<<<<<<<<TAC1            --------->ZAT14 ----ANAC58<xxxxxxxxxxxxxxxxsmallRNA(i)                   --------->ANAC46         <---------ZAT14 -AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(i)                  <---------ZAT18     <----------DOF2   -------- xxxx>smallRNA(s)              ----------->GT1         --------->ZAT14 <---------At4g35610   <------- xxx>smallRNA(s)     --------->AtLEC2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT18   tgttctaccagtcctaagtgaacatgcagaaaacagaaaatcaaacagaaacagtagaacactcgaccaacacagctctttgcagagcactgagtgaggt  15824100                                                                          <------MYB83                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  --------->AtMYB61                                                        <---------At4g35610                                                        --------->At4g35610                                                        <-------GAMYB     <---------MYB46(3)                                                       <-----------RAV1(1)<------MYB46(1)                                                       <---------MYB46(3)--------->ALFIN1                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 ------->GAMYB                     <xxxxxxxxxxxxxxxxsmallRNA(i)                --------->MYB46(3)                xxxxxxxxxxxxxxxx>smallRNA(s)              --------->MYB52(1)                  xxxxxxxxxxxxxxxx>smallRNA(i)      <-----------RAV1(2)             <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------TOE1(1)     <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------AtMYB61      ----- ----------->HVH21              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------MYB46(3)      ------- ->MYB59    <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->ZAT18   <---------ZAT14   ----------------->AGL1 --AtMYB61 <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ZAT14   --------->ZAT14  xxxxxxxxxxxxxxxx>smallRNA(s)   cgagtgacaagtcgagtaacagacagaaaatgaaacagaggtactcgattgcacagtctgttgccagaccactgggtggtcgagtaccaggtcgagtaac  15824200                                <------ZmHOX2a(1)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          ----------->HVH21                         <-----------HVH21                        <---------ANAC55(2)                        --------->At4g35610                                               <------ZmHOX2a(1)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxx                      <-----------RAV1(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)     ---------->DOF2                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    ----------->RAV1(1) --------->ZAT14                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ANAC58       <---------ZAT14       --------->AHL20(2) --------->GLK1(1) <x                 <xxxxxxxxxxxxxxxxsmallRNA(i)--------->At4g35610         --------->At4g35610---------           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------AHL20(2) <---------GLK1(1) <x           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ZAT14      --------->YAB1   <---------TOE2(3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxx   <---------ICU4--------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ICU4 --------->ANAC46    ----------->GT1----------->GT1   <---------ATHB12xxxxxxxxxxxxxxx ---->ZAT6xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  xxxxxxxxxxxxxxxxx -->MYB52(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ZAT6  --------->WOX13(1)------>ZmHOX2a(1)   agtaagaattgcagaaactaagcaacaggtgacaggatgcagtaaacagcagtagagtaaacaataaaatcaatcagataaagaattcctaaggatgggg  15824300  Previous    Next  AGI:  At1g42350.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.1e-102 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 15816285    to: 15823764    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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