Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------ICU4                                                                    --------->MYB52(1)                                                                   --------->DEAR3(1)                                                                   <---------ALFIN1                                                                   --------->AtMYB61                                                            --------->LBD16       <--------HAHB4                                                           --------->ANAC46      --------->ICU4            ------>ZmHOX2a(2)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <------ZmHOX2a(2)                              <---------HSFB2a(2)  ======================           --------->GLK1(1)     --------->TOE2(3)        --------->HSFB2a(2)  <---------------AGL15           <---------GLK1(1)   <---------YAB1             <---------LBD16      --------->TOE2(3)          <---------ARR11(3)  --------->KAN4(2)          <---------ANAC46      --------------->AGL15          --------->ARR11(3)<---------ARR14(2)       --------->HSFB2a(1)   --------->KAN4(2)      ---------->DOF2       <---------MYB52(1)       <---------HSFC1(2)  <---------MYB52(1) <---------TOE2(3)          --------->ARR14(2)       --------->HSFC1(2)  <---------ARR14(2) <---------TOE1(3)  <----------DOF2                  <---------HSFB2a(1) --------->ARR14(2) --------->MYB59    <---------DAG2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ->TEIL  --------->RVE1(1)--------->LBD16         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               < ---AtLEC2<---------AGP1<---------LBD16       --------------------->WRI1<---------MYB52(1)         <- ----------------TaNAC69(2)<---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATHB51 <-   gtttaggttaaagatctctcggcttttccggttattcttagctataggcatagggagtttcgcggaacaccaccggttattccataattagagttttagt  15753600                                  ==========================HOX2a_HOX2a                                <---------ARR11(3)                                --------->ARR14(2)                             <---------HSFB2a(2)                             --------->HSFB2a(2)                      <-----------------AGL2                     --------->STY1(2)                    ------>MYB83<---------AGP1               ------->GAMYB<---------LBD16              --------->MYB46(3)<---------ARR14(2)       xxxxxxxxxxxxxxxx>smallRNA(i)      --------->MYB46(3)                         <---------ANAC58    <---------MYB46(3)<-----------------AGL3 <---------ATHB12                       <---------ANAC58 =======================================MADS_MADS                                <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  -------->P   ------>ZmHOX2a(1)        <-----------GT1 --------YAB1 <---------MYB111(2) ------>ZmHOX2a(2) --------->TOE2(3)   <---------TOE2(3) --------TOE2(3)    ------>MYB46(1)  <---------MYB52(2)                --------->MYB52(1)   taagaatggttcgataacaacctagctatttctggatctactaaccaatagtttcctaaaaataccctaagcctaacgttttactttcttgtcttacaac  15753700                                                                                              <------                                                                                           xxxxxxxxxx                   <----------DOF2                                              <---------ANAC46              <---------ANAC58       <---------YAB1                  --------->TOE2(3)     <---------ARR11(3)              <---------ANAC58      <-----------GT1                  <---------DAG2     --------->LBD16   --------->GLK1(2)            <---------AHL20(2)      --------->TOE2(3)       <---------ANAC58   <---------ARR14(2)       <----------DOF2            --------->At4g35610      <---------ANAC58<----   --------->ARR14(2)   ---------->ID1         --------->YAB1        --------->TOE1(3)------>ZmHOX2a(2)   ctcacaatctgctattgcttccttttgtttctttttattttcattactatcttacttagcttaattcaaaaccttatctattgtgtgatccgagagcttt  15753800                                                                                              -------                                                                                        <---------HSFB2a(2)                                                                                     <---------MYB52(1)                                                                                     --------->ATERF1(1)                                                                                    <-------GAMYB                                                                                   --------->DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                  --------->RAP2.3(1)                                                                                  <------NtERF2 ----DOF2  <---------MYB52(1)   --------------->AGL15                            <---------RAP2.3(1) xxxxxx>smallRNA(i)             <---------------AGL15                            ------>NtERF2<------ -----ANAC46              --------->ATHB12                                      <---------DEAR3(1)   gtggaattcaacccttaagttctacaattgatttcttatttgagagagtggtcttatggcaatttgatatatatcaaatttggcgccgttgccgaagttc  15753900                                                                                                    -                                                                                                   xx                            <---------ARR11(3)                          <-----------GT1  <---------ANAC46                            <---------GLK1(2)                          ---------->ID1    <---------ANAC58         --------->ATHB12   --------->ARR11(3)                        <-----------GT1    <---------ANAC58        <---------YAB1    <---------TOE1(3)                 <---------AHL20(2)       <---------ANAC58      <-----------GT1     <---------TOE2(3)            <---------AHL20(2)            <---------ANAC58 -->ARR11(3)        <------ZmHOX2a(1)    <----------DOF2    <-----------GT1     <----------DOF2   <-- ---ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(2) <----------DOF2      <----   tctacaattcaccattggattaggatttaagattttgtctaagcttttttttttttttttatttacttagtttttctcttttctttttcttgtgtgtttc  15754000                            ------>MYB46(1)                            --------->MYB52(1)                               ---------->DOF2                            ------>MYB83                                <---------TOE1(3) --------->ANAC58                          <---------MYB59                       <---------ICU4            --------->ANAC58              --------->ANAC46                                 <------ZmHOX2a(2)     <---------ZAT18 -------->ALFIN1          --------->AtMYB61                   --------->ARR11(3)     <---------ETT(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <---------ANAC58 --------->TOE2(3) -------At4g35610      <------ZmHOX2a(1)                 <---------ANAC46 --------->TOE1(3)<---------ATHB12 -------RAV1(2)      *TSS --------->MYB46(3)             <---------ANAC58--------->At4g35610   aggtgtttgtctaatcacagaaccaggaccaaacgagaaacatgaacgagagtgagattgctgggatcatggctaagcttaacgcggtccacaatcaact  15754100                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                               ------                                                                                               ------                                                                                            ---------                                                         ------>MYB83                      -------->P                                                         -------->P                        ------>MYB83                       <---------At4g35610    --------->CCA1(2)                            ------>MYB46(1)               <---------YAB1                <---------ARR11(3)                     --------->HSFB2a(1)    <------ZmHOX2a(1)  --------->At4g35610   --------->ARR11(1)                     <---------HSFB2a(1)  <---------ANAC46<-------TEIL      --------->LBD16      ------>MYB46(1)    ------>ZmHOX2a(1)------->GAMYB   tgtggaggatgtcgattatgttcgtagcagaggttttccgaatcaaagatttgatcaccaacaaggctatagagtttcctatgggaatggtccaaccagc  15754200                                                                                                 ----                                                                                                 <---       <---------ARR14(2)                                                          ------>MYB46(1)       --------->GLK1(1)                                                           ------>MYB83 -----       <---------GLK1(1)    <----------DOF2                          ------>ZmHOX2a(2)        <------       --------->ARR14(2)<---------ALFIN1                          <---------ARR11(3)   <---------ALFIN1 --------ALFIN1         --------->MYB46(3)               --------->ANAC46          --------->ANAC58 ------>ZAT14          -------->P                        --------->ANAC58<---------ANAC58  --------->ANAC46 -------ZAT14        --------->MYB46(3)                  --------->ANAC58<---------ANAC58<---------ALFIN1 --->ZAT2           <---------At4g35610             <-------TEIL   --------->ARR11(3) --------->DEAR3(1) --->At4g35610      --------->At4g35610         <---------TOE1(3)<---------YAB1    --------->ANAC58 >MYB46(3)         --------->ANAC46            <-----------RAV1(2)--------->YAB1   --------->ANAC46 <   tacactgagaattctcagtttcagcaaccactttagaatagcaatagtttcaggttcacaaggaactatgatcttgcttcttaccaagccccccctccac  15754300                                                         <------ZmHOX2a(2)        --------->ANAC58                                --------->ARR11(3)        --------->ANAC46                                <---------ARR11(3)        --------->ANAC58   --------->HSFB2a(2)     ---------->DOF2      ---------->DOF2      <---------HSFB2a(2) <---------WRKY12    <---------HSFB2a(2)   <---------ANAC58     <---------WRKY38(1)    --------->HSFB2a(2)   <---------ANAC46    --------->WRKY18(1) ------->TEIL             <---------ANAC58  <------MYB46(1) --->PIF5            --------->ATHB12       <------MYB83--------->ARR14(2) ----PIF5            <---------ICU4    <---------HSFB2a(2)                                    ------- ------>RAV1(2)      --------->YAB1    --------->HSFB2a(2)------>ZmHOX2a(2)                 <-------- ---ALFIN1           -------->ATHB1 --------->GLK1(2)   <---------ARR14(2)                  --------- ---------ALFIN1    <---------YAB1 <---------GLK1(2)   <------ZmHOX2a(1)                   <------ZmHOX2a(1)   ctgcacctagaagcaagatagaatcattgctggaacagagtctggaaggtcaacaaaggatcttagagaaacttatccctagatggaatgagaggagcct  15754400                                                                                                   --                                                       <------ZmHOX2a(1)                        ----- -->ATERF1(1)     <----------DOF2                    <---------TOE2(3)                       <------- -ARR14(2)<---------ANAC58                     <---------YAB1  <---------YAB1            --------->ETT(2) >ARR14(2)<---------ANAC58---------->DOF2      --------->ICU4<-----------GT1         >>>>>>>>>SUP----   cactacttcttggcatgctgcttcaatggaaagtgagtatgagttagtgaagattgaggagaattacgattttgaagttgcagagacagtgtcgatcgac  15754500  Previous    Next  AGI:  At1g42160.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15754021    to: 15755511    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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