Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                --------->DAG2      --------->At4g35610                      --------->LBD16       <xxxxxxxxxxxxxxxxsmallRNA(s)                    <---------LBD16     <<<<<<<ZML2 <---------At4g35610                   <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------LBD16                  <---------ARR14(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)                  --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->GLK1(1)   --------->HSFB2a(2)                 <---------GLK1(1)   <---------HSFB2a(2)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------DEAR3(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ARR11(3)          <---------DAG2          <          ---------->DOF2      ---------->DOF2  --------->ARR11(3)----------->GT1               -----         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxx        >>>>>>>>>GATA-1   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->LBD16       <----------DOF2     <----   atactgaatagataaagagaaatccggattacaaaaagtctagaacacaaggtctgcggaaataaaactagataaaaactttttgtctgcgaaaatgaga  15679600                                                                                        --------->ALFIN1                                                                                       ------->MYC2                                                                                       ------->PIF5                                                                                       ------->MYC4                                                                                       <-------MYC4                                                                                       <-------PIF5                                                                                       <-------MYC3                                                                                       ------->MYC3                                                                                       <-------MYC2                                                                                      --------->TGA1a                                                                                      --------->O2                         --------->LBD16                                              <---------O2                         --------->ANAC46                                             <---------PIF3(3)                        --------->HSFB2a(2)                                           ===============           ---------->DOF2                                                            --------->PIF3(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       <---------TGA1a        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <---------ALFIN1      <---------------AGL15      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             ---------------->PIF3(2)      --------------->AGL15    --------->TOE2(3)                           <xxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC46     <---------HSFB2a(2)                               --------->ZAT14 -------TEIL         --------->ARR11(3)                                   <---------ZAT14   <xxxxxxxx ---------->AtSPL3  --------->CCA1(1)                                   --------------->AtSPL3 xxxxxxxxxxx>smallRNA(fl3)     --------->TOE1(3)                        --------------->AtSPL8 -----------AtSPL8  --------->RVE1(1)        <----------ID1    ----------->GT1    <----------------PIF3(2)   agtacatgctacttatagccaaatatcccgaaaccctaatactcaaaacgacgaagtattgggatgggttaagaactgtactcgacccacgtggtcgagt  15679700                                                           <---------ZAT18                                                           <---------LBD16                                                           <---------ZAT14                                                           --------->ZAT18                                                        <---------ANAC58                                                        <---------ANAC58                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     <--------P                                                 <---------ANAC46                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  <---------ANAC58  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxx                                  <---------ANAC46xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxx              --------->At4g35610xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxx      ----------->GT1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <xxxxxxxxxxxxx      <---------ANAC55(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <-----------HVH21    <---------WRKY12        xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46          <---------ANAC58   --------->WRKY18(1)    <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)----------->HVH21  <-----------HVH21  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------------------WRI1<xxxxxxxxxxxxxxx ====================================bZIP_DOFxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------ANAC58  x xxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)--------->ALFIN1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gagaggtcaagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatgaagaaggctctgaagcttgtcatcgagtat  15679800                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------AtMYB61          <---------MYB46(3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------AtMYB61         --------->ALFIN1         <---------ANAC46         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------MYB46(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ALFIN1      <---------AtMYB61    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------ANAC46                                                                    --------->ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->ALFIN1           <-------GAMYB   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxx xxxxxxxxxxxxxxx>smallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------DEAR3(1) xxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->bZIP60(1)  <xxx xxxxxxxxxxxxxx>smallRNA(i2)        <--------P<---------AtMYB61             <---------bZIP60(1)xxxxxx xxxxxxxxsmallRNA(se3)          <-----------RAV1(2)   <xxxxxxxxxxxxxxxxsmallRNA(s)   <------NtERF2  < xxxxxxxxsmallRNA(le3)   --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------DEAR3(1) xxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(i)xxx   gcagtcgagtggtggtgatggtgatactcgacatccaggtagagtgatgaggtcgagtagaggtctggcaatgggatgaagtcactcggcgttggggtcg  15679900                                                          --------->ALFIN1                           <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------AtMYB61            --------->ALFIN1                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <---------AtMYB61                   <---------bZIP60(2)        ------>ZmHOX2a(2)--------->CCA1(2)      <---------O2    ----------->HVH21   <---------GLK1(2)       <---------ANAC46  <---------bZIP60(1)   --------->ARR14(2)   ----------->HVH21       --------->ICU4  <---------ANAC46      <---------ARR11(3)   ----------->TGA1        <---------YAB1           *TSS  --------->bZIP60(1)   <---------ARR14(2)  <---------WOX13(1)     <---------At4g35610  ------------- xxxxxxxxxxsmallRNA(i)  --------->ARR11(3) <---------ANAC58   <---------MYB46(3)       ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ANAC58  <---------AtMYB61     ----------->HVH21 xxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------ANAC46<---------MYB46(3)    <---------bZIP60(1) ---------ZAT14<---------ZAT6            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->bZIP60(1) xxxxxxxxxxxxxxxxxx>smallRNA(i2)    <-----------RAV1(2) <---------ANAC46    <---------At4g35610    <-   agtgatgtgatcgagtggtgttagaagatactcgacttccaggttgagtgacgaggtcgagtggtggtctgatgatggagatgatgtgatcgagtgatgg  15680000            <---------YAB1          --------->YAB1                              <---------MYB52(1)         <---------ATHB12                  <------ZmHOX2a(2)             <---------At4g35610 --------->ANAC58                          --------->CCA1(2)             --------->ANAC55(2) <---------TGA1a                           --------->At4g35610           --------->ANAC46 --------->O2                             <---------AGP1                <---------TOE2(3) --------->bZIP60(2)                      --------->AGP1 <---------ANAC46----------->GT1 --------->TGA1a                          --------->ARR14(2)           <-----------RAV1(2) =======================================bZIP_DOF ------------>MYB.PH3(1)<---------TOE1(3) --------->ANAC58                         <---------ARR11(3)    --------->ARR14(2) <---------ANAC55(2)                      --------->ARR11(3)    <---------ARR14(2)                 -- --------->ANAC46                         <---------ARR14(2)    --------->GLK1(2)                  -- ---------->TaNAC69(2)                   <---------GLK1(1)     <---------GLK1(1)               ------ --------ALFIN1              ---------->DOF2------>ZmHOX2a(2)  --------->GLK1(1)              -------   aacacgtccctatcaacattgttaactggaagaaagtgactcgagatctgaaaacagttatgtggaaatctgttcaggtaacaagtagttttttaaaaaa  15680100                                  <---------ANAC46                             <---------ICU4                             -------->HAHB4                            <---------YAB1                            --------->ICU4                            <---------ATHB51              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------------AtSPL8              --------------->AtSPL8                                                      --------->ARR14(2)              <---------------AtSPL3<---------YAB1                                        <---------ARR11(3)             ------>ZmHOX2a(2)    <---------ANAC58                                        --------->ARR11(3)        <---------WOX13(1)<--------HAHB4                                                  <---------ARR14(2)     <---------YAB1       --------->YAB1<---------MYB46(3)                         ---------->DOF2    --------->At5g28300  <---------AHL20(2)                                   <---------WOX13(1) ------->WRKY38(1)     --------->HSFB2a(2)                                   <---------ARR14(2) ------->WRKY12 <---------MYB52(1)<---------ANAC58                           --------->ARR14(2)     < --->DAG2  --------->ARR11(3)--------->YAB1               <---------TOE1(3) --------->ATHB12    ----- --->DOF2  <---------AGP1<---------YAB1<---------WOX13(1) <---------TOE2(3)<---------YAB1<---------CCA1(2)   gttgactgtaattgatctggtacttctataattatggtgtgattgttcgtgaatgcattcaaggtttgagcttgatgaagattggcaaagtatatctgtg  15680200                                    <---------ANAC46        <---------ANAC58                               --------->ANAC46             <-------GAMYB                           --------->ANAC46                 <---------ANAC58                           --------->ANAC58                <------MYB46(1)                           --------->ANAC58                <------MYB83                          --------->ZAT18                 --------->MYB59                          <---------ZAT18             <---------AHL20(2)                        --------->ZAT18              <---------AHL20(2)                        <---------At4g35610          --------->AHL20(2)                        --------->ZAT14        ----------->GT1         ----------->GT1<---------ZAT14       <---------TOE1(3)                                 -----        ----------->GT1 --------->At4g35610   <---------TOE2(3)                                 ----- -----------GT1         <---------ZAT18    --------->ALFIN1<---------MYB46(3)   <------ZmHOX2a(1) ---->YAB1        --------->ALFIN1 <---------LBD16  <---------YAB1 <---------MYB52(2)------->TEIL   ataaaccagatgggaaatatgtggagagcacacaagtcgcgcagggtgaaggttattaatttggttgcaaataaccaagagaggatgaatttgagaccaa  15680300                                                                  <---------ANAC55(1)                                                          ----------->GT1               <---------ANAC58                          <---------TOE2(3)               <---------ANAC46                          <---------TOE1(3)               <---------ANAC58                <---------ZAT14    <---------ANAC46  --------->TOE2(3)                            <---------ZAT18    <---------ANAC58  --------->YAB1                               --------->ZAT14    <---------ANAC58            ------- ->MYB46(1)   --------->ATHB12                --------->ALFIN1  <---------AHL20(2)        <---------AHL20(2) ->MYB83  ------>ZmHOX2a(1)                  <---------------------WRI1      ---------->DOF2---------   ctaatattaatcctgttgagtggcaaaagtttgtcaaactcaaaaccagtgcagcattcaaggtaattacttgtgaatataaagttttgtatttaaaagg  15680400                                                                                    --------->DAG2                                                                                   ---------->DOF2                                                                               ----------------->AG                                                                               <-----------------AGL2                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           --------->ANAC58              --------->AtMYB61                                           --------->ANAC58           --------->ANAC58     <-----------GT1                      --------->DAG2              --------->ANAC58  ----------->GT1                        ---------->DOF2      --------->ARR14(2) <---------RAP2.6(3) -->DAG2                           <-------TEIL     ---------->DOF2   --------->ANAC46 ->DOF2                       <---------------------WRI1      <---------ARR14(2)--------->RAP2.6(2) -   ggattagtaacatgtttcattgttaggctgtgagtgatacatataaagcaagaagaaagaaacagatacctcacaccactagccgtaaagggattgtcag  15680500  Previous    Next  AGI:  At1g41910.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 2.1e-130 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 15679994    to: 15682514    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version