Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------MYB46(3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                <------MYB83                      <----------DOF2            ----------->RAV1(2)                <------MYB46(1)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------AtMYB61                ------>ZmHOX2a(1)            --------->At4g35610            <-----------RAV1(1)                xxxxxxxxxxxxxxxx>smallRNA(i) ------->TEIL       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------GT1           ---------->DOF2      ------>ZmHOX2a(2)       <----------DOF2---------->ID1==============================RAV   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <-----------GT1----------->RAV1(1)                  <----   actggtgatcgagtatgttggtggaaatatgactttctgttctgtttttcctctttctgagcaccaatagctccaaagcacctgaaacaactccaaaatg  15658500                                                              ------->TEIL                         <-                                                           <---------YAB1                  xxxxxxxxxx                                                   --------->YAB1            <---------ANAC46      --                                    --------->ANAC58--------->ARR11(3)       ----------->GT1     ----                                    --------->ANAC46<---------AHL20(1)      <---------MYB46(3)xxxxxxx     ------->TEIL                   --------->ANAC58--------->AHL20(1)---------->DOF2     xxxxxxxxxxx ---TEIL            ------>ZmHOX2a(1)     <---------------AtSPL8    <---------YAB1        <----------   cataatgtatgcaagactagtcctagactcgacttaagacgcaaaatgtacaaaaatattgatgaatgctatgaaagatgggtgaaactagactcaaaat  15658600                                                                                                  ---                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                             --------                                                                                            ---------                                                                                          <---------ALFIN1                                                                                          --------->ANAC58                                                                                        --------->AtMYB61                                                                                        <---------ALFIN1                                                                                        ------->GAMYB        <------ZmHOX2a(1)                                                              --------->MYB46(3)    ---------->DOF2  --------->AtLEC2                                                  <---------MYB55(2) --------YAB1        --------->ANAC58                                                 ------>MYB46(1) xxxxxxxxxxxxx>smallRNA(si3)                                     <---------ZAT14      -------->P----- --------->GT1       --------->ANAC58                  --------->DAG2                 ------>MYB83--- ------->GT1<---------ANAC46                          ---------->DOF2               --------->AtMYB61 xxxxxxxxxxxxxxxx>smallRNA(fl3)  <-------TEIL      <---------ANAC58                 --------->MYB46(3) xxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)     <---------ANAC58         --------->YAB1--------->ANAC58 -----AGL15 ----------->GT1 <---------AHL20(2)     <---------ANAC46        --------->ICU4 --------->ANAC46   ggtgataaaaggatgtgtgaaacatgcaaattatatacatatcaagagtgtttgcgtaaagggagattgcagtagcaagaatgagaccaaccacaccacc  15658700                                       <---------ALFIN1                                     ----------->RAV1(1)                                --------->ARR11(3)                                --------->KAN4(2)                                <---------ARR14(2)                                <---------ARR11(3)       --------->MYB52(1)       --------->ARR14(2)     ------->GAMYB             <----------TaMYB80   ------>MYB46(1)             --------->HSFB2a(1)   -------->P                  <---------HSFB2a(1)   ------>MYB83                <---------GLK1(1) --->MYB83                     --------->KAN4(1)                 <---------YAB1 ----->WOX13(1)                --------->GLK1(1)                <-------GAMYB -----ALFIN1                  <---------KAN4(2)                ----------->GT1 ---->AtMYB61                 ---------->TaMYB80               <---------MYB46(3) ->AtMYB61              <---------ANAC46                      <--------P >MYB46(3)              <---------ANAC58                      <---------MYB55(1) --------->TOE2(3) ---->MYB46(3)          <---------ANAC58                     <---------MYB52(1) ----------->RAV1(2) --->MYB46(1)    <---------YAB1<---------KAN4(1)        <-----------GT1        -------->P     -------   aatccaacccaatggaaccatgactgtcttggaatatcccaacacataggcactgtttataccggttgttataacaaatgctacctgaaaccatgaattg  15658800                                  ----------->RAV1(1)                               --------->ANAC46                               --------->ANAC58                               --------->ANAC58                               --------->AtLEC2                              ------->MYC3                              <-------MYC3                                                      <----                              <-------MYC2                                                <---------ATHB12                              ------->MYC2                 ------>ZmHOX2a(1)          --------->MYB46(3)   <---------ARR11(3)      <---------ALFIN1                <----------DOF2          --------->ANAC46   --------->ARR11(3)<-----------HVH21        ----------->GT1                     ------>ZmHOX2a(1) -------->AtSPL8    <----------DOF2 <---------ALFIN1      --------->TOE2(3)      --------->TOE2(3)   tacaagttcttcaacacttaagctttcacacacatgcaacactgaatagagtatatatatcctttgtcaactatttctatattcctcagccactcatttt  15658900                                                                  --------->LBD16                                                                 --------->HSFB2a(2)      ----------->GT1                            --------->YAB1  <---------ANAC46                ----    *TSS                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <------- >>>>>>>>>>>>>>>>>LFY               >>>>>>>>>>GT-3b              <---------HSFB2a(2) --------->ANAC58 -------GT1                    ---------->DOF2  <---------YAB1  <---------LBD16      --------->ANAC58   tcatcccaatgtaaattcagagtaatataaaacaaaagaaaaatagagttttcatagctaaaaatttgcggaagacaaaaactgatcaagaaacttattg  15659000                                                       --------->DREB2C(2)                                                      <------NtERF2                                                      --------->ORA47(2)                                                      --------->DEAR3(2)                                                      --------->ATERF1(1)                                                      --------->DEAR4(2)                                                      --------->ERF1                                                      --------->RAP2.3(1)                                                      --------->MYB46(3)                                                     <---------ATERF1(1)                                                   --------->ZAT18                                                   <---------ZAT18                                                 --------->ANAC46                                              <---------ZAT14                                           ===================================================MADS_MADS                                           <---------------AGL15                                          --------->ZAT6------>NtERF2                                          <-----------------AGL1                                          --------------->AGL15                            <---------                                          <---------------AGL15                         ----------->GT1                                         ----------------->AGL3                         --------->ANAC58                                         <-----------------AGL1     ---------->DOF2     --------->ANAC58                          ----------->RAV1(1) --------->ZAT14 <---------ARR11(3)      ---------->DOF2                    ---------->DOF2      <-----------------AGL2   <---------YAB1   <---------HSFB2a(2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->DEAR3(1)   <-----------------AG  <-- ------>DOF2      <---------YAB1         ----------------->AGL1 --------->YAB1     --------->HSFB2a(2) -----CBF       --------->YAB1           =====================================================MADS_MADS   aaagttcacattcttgaatcatcaaagacaacagtttccagtttccactatagggcaccgccaaaatcatcaaagacaacatgttttggaaagtaacatc  15659100                                      --------->AtLEC2          ---------->DOF2                             <---------At4g35610            ---------->DOF2                             ----------->RAV1(2)        ----------->GT1                             --------->At4g35610       <---------MYB46(3)                --------->MYB52(1)                             <---------ZAT2           <---------ANAC46           <-------------------                             --------->ZAT2           --------->ETT(1)         --------->ATHB12  <--- --GT1                    <---------At4g35610     <----------DOF2             <---------YAB1--------- -------YAB1            <-----------GT1<-------TEIL <-----------HVH21--------->MYB52(1)<---------MYB52(2)   attttagtcccttgatgcttcatattttagcagctgaaacatgcatcaacagcttgtcgggtaaaagaaagtaacagagtatcattgaaactaacaaaga  15659200                                                                                         <--------ATHB1                                                                                         --------->YAB1                                                                     --------->DAG2     <---------ATHB51    --------->DAG2                                                  --------->DAG2      <---------ATHB12   ---------->DOF2         <---------LBD16                         ---------->DOF2   --------------->AGL15  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      ----------->TGA1        <---------------AGL15 --WRI1           <----------DOF2                          --------->YAB1           ----------------- -------ID1 --------->ANAC46--------->LBD16             --------->TOE2(3)           --------->LBD16 ->DOF2     --------->MYB46(3)   <---------ANAC46       <----------DOF2             -----------------   agacaaaaagctaaacgaccctttcaattcccggtctgtgtattatttcttaagaaaactttaatgacgaaaaggggcataaattccccaataatagaag  15659300                                                                                        <------------                                                                                        -------------                                                                                        ------>ZmHOX2a(1)                                                                                       ==============                                                                                <---------AHL20(2)                                                                            --------->AHL20(2)   ----                                                                    ------->GAMYB      --------------               --------->ZAT2                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxx               --------->At4g35610             <-------TEIL        <---------MYB52(2)  <-------------       --------->HSFB2a(2)                   <---------ARR14(2)    --------->MYB46(3)  --------------       <---------HSFC1(1)                    --------->ARR14(2)  ----------->RAV1(1)   --------->TOE2(3) >AGL3 <---------HSFB2a(2)         <----------ID1              --------->At4g35610     <------------- >AGL2 --------->HSFC1(1)          --------->ANAC46         --------->At4g35610 --------->AHL20(2)<xx   agttttcttctagaaacagctcgagattatgcaataaacgacaagtagattcaccaaaaacgagcagcaacaaacaaaaaatataaattcctaaaaatag  15659400  Previous    Next  AGI:  At1g41890.1    Description:  pseudogene, proline transporter 2, similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783 amino acid permease {Oryza sativa} Range:  from: 15655076    to: 15658904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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