Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ----------->GT1               --------->YAB1                                                 ---------->DOF2            --------->WOX13(1)                                     <-----------------AGL1            --------->YAB1                             --------->ATHB12 --------->ALFIN1           --------->AHL20(2) <-----------GT1         <---------YAB1    <---------MYB46(3)          -       --------->MYB46(3)  ----------->GT1 <---------YAB1        --------->WOX13(1)<-----------GT1  <   ttttgcacaaccattaatcagaaacaatggagtaacattacaaatatgagagcattatcattgaaatctatcagttgtggcaaagttacaaactttcatc  15654600            <---------GLK1(1)            --------->GLK1(1)   <---------KAN4(2)                                      ------->TEIL  <---------DAG2           <------MYB46(1)                                         <---------------AtSPL3 -------->ARR11(3)         <------MYB83                            ---------->DOF2---------->DOF2 ---------ARR11(3)         ----------->GT1                   <-------TEIL----------->GT1   gagaccttatgttgatatccaaaaacgataggtgaatattcaaatccaaataacttaagaacatacagagaaagactgaaaattgaaagtacctcttgta  15654700                                                                                                   --                                                                                                   <-                ------->TEIL                                                                       --             --------->ANAC58                 <---------ARR11(3)                                   --             --------->ANAC46                 --------->ARR11(3)                                   <-             --------->ANAC58             ---------->DOF2                  ------->GAMYB         <---            --------->LBD16          ----------->RAV1(1)                  <---------MYB52(2)    <----      <---------HSFB2a(1)         ------->GAMYB                 --------->ZAT18                ------      --------->HSFB2a(1)         --------->ANAC46         ---------->DOF2--------->MYB46(3)  <------   <------ZmHOX2a(1)           --------->MYB52(1)   <---------At4g35610 --------->MYB52(1)   --------   gccgaggactgttccacgaacatacaatctgcataacagcaacacaaagatttcatcagattaaagtgaaccagtaacgaacaaattcaaatcggagatt  15654800                                        --------->ZAT6                                      ------>MYB46(1)       ---------->DOF2                ------>MYB83 --------->RAV1(2)                   --------->MYB55(1) --------At4g35610                  <---------MYB59 ------->At4g35610         --------->TOE1(3)          <---------ANAC58 ------->ZAT2              --------->TOE2(3)          <---------TGA1a --------ZAT2        --------->YAB1 <---------MYB46(2)--------->TGA1a --------RAV1(2)    <<<<<<<<<ARR2  <---------ANAC55(2)--------->bZIP60(1) ---TEIL            <---------ATHB12<---------MYB111(1) --->GLK1(2)  <---------ZAT18      --------->ANAC55(2)<---------ANAC58                      ------>ZmHOX2a(1) ---ARR14(2)  <---------ZAT14    <-----------GT1      <---------bZIP60(1)       --------->ZAT6 ->GLK1(1)    --------->ZAT18 <---------ICU4       ----------->HVH21          <-----------GT1     <--   cagctgagaaaaagagagcacaatcaaaaccctaattacctaactctctctccttgacgtcccttcattttcaatccttgtaactctcgtcttcctcttc  15654900                       <---------ARR14(2)                 ------>NtERF2                --------->DEAR3(1)               <----------CDC5               --------->ATERF1(1)               <------NtERF2              <---------At4g35610                                <----------DOF2              ------>NtERF2                                     =====================================             --------->DEAR3(1)                                 <-----------------AGL3             --------->ATERF1(2)                          --------->WRKY18(1)            <---------RAP2.6(2)                         <------MYB46(1)               --------->At4g35610          <-----------RAV1(1)                          --------->MYB59             *TSS      --------     <----------DOF2   --------->ARR14(2)          <----------DOF2           --------->YAB1<---------At4g35610 ---------GT1<---------ATERF1(2)       --------->TOE2(3)<------MYB83        <-------TEIL   --------->At4g35610   ttactctcttttatgccgccgagcgaattcacagagaaaaaccctagttttcgctattaggtcaagactttatatggattcataaataagctcagcaaca  15655000                                                                                                   <-                                                                                               <-----                                                                  --------->ARR14(2)           ------                                                              ----------------->AGL2          <------                                                              <-----------------AGL3       --------->AHL20(2)                                                        <---------ANAC58 <----------DOF2--------->YAB1                                                        <---------ANAC58<---------ANAC58-------->HAHB4           <----------DOF2                           <---------RAP2.6(2)<---------ANAC58<---------ICU4    <------------CBF     --------->TOE2(3)    --------->TOE2(3)   <---------ARR14(2)   --------->ICU4 ===============================================================================MADS_MADS <---------YAB1 --->RAV1(1)    <-----------RAV1(1)           <----------DOF2 ----------------->AGL3   <---------YAB1   aaactctattgggcttatatgtggctatctcaaacaagttggcccaaactttaatacggcttggcccaaatatggctttgcataagaaaatgattattta  15655100       <---------ICU4       --------->YAB1                   --------->ZAT14      <---------ATHB12     --------->GLK1(2)<----------DOF2 --------->TOE2(3)  <---------ANAC58   <----------DOF2 --------AHL20(2)   <---------ANAC58   <---------DAG2                                   --------->ICU4 ----AHL20(2)   <----------DOF2    <---------ZAT14                                 ----------->GT1 --->AHL20(2)  <---------ANAC58  <---------bZIP60(1)                             ---------->DOF2 ---AHL20(2)   <---------ANAC58  --------->bZIP60(1)                        ----------->GT1   ttttcttaatcaatatggctttgcttaagaatatgacttcactttactttgtttcttctatttgtctcttgaattgttttgttaaaagtaaaaatttgtg  15655200                                    <---------AHL20(2)                                <---------AHL20(1)                                <---------AHL20(2)                            <---------YAB1                                       <---------AHL20(1)                       ----------->GT1                                           --------->AHL20(2)                      <---------TOE2(3)                                          <---------AHL20(2)              --------->AHL20(2)<---------AHL20(2)        ----------->GT1    <---------YAB1            --------->AHL20(2)  --------->AHL20(2)      ---------->DOF2 <------ZmHOX2a(1)   ----------->GT1  <---------AHL20(2)              --------->YAB1  ---------->DOF2  <-----------GT1-   ttgaacagaaaaatttttatatataatgttataaaaaatttatgtcatttgaaataataaaagtaacaacaaaaggattacaatttttttcttcttggta  15655300                                                                                             XXXXXXXX             <---------DOF5.7(2)                                                             --------           --------->DOF5.7(2)                                                               --------          --------->TOE1(3)             --------->YAB1                 --------->ZAT14     --------->At4g35610          --------->TOE2(3)    --------->AHL20(2)                      --------->ZAT18     <---------At4g35610    <-----------GT1            <---------AHL20(2)           --------->ARR11(3)            ------->GAMYB <---------ICU4           <---------ARR11(3)                <---------ARR11(3)--------->CCA1(2) -------->ICU4            --------->ARR11(3) --------->At4g35610       <---------ZAT14 --------->MYB52(1)   taatttttacatcgttaacaatgtcgaagacattttaatcaaacatcagcaaaaacatggaagttcttgggagtccacagagatgagtctaacagcagca  15655400                                       --------->ANAC58                                     ---------->DOF2   --------->ZAT2                  --------->TOE2(3)   --------->At4g35610           --------->ICU4   <---------At4g35610           <---------ATHB12                                             <------ XXXXXXXXXXXX>MIR834        --------->ANAC58          <----------DOF2                        -------- --->RAV1(1)                --------->ANAC58     ---------->DOF2                            <-------- ->RAP2.6(2)           ---------->DOF2 --------->ANAC58                              <----------ID1   atagcagcagcaagagacattaatccaaagaagcaaacattaagccaatgccaaagcttttgcacaagactaagcttatcgttcatagcaacaagataca  15655500  Previous    Next  AGI:  At1g41880.1    Description:  60S ribosomal protein L35a (RPL35aB). Identical to 60S ribosomal protein L35a-2 (RPL35AB) [Arabidopsis Thaliana] (GB:Q9FZH0); similar to 60S ribosomal protein L35a (RPL35aD) [Arabidopsis thaliana] (TAIR:AT3G55750.1); similar to unknown [Populus trichocarpa] (GB:ABK93065.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780) Range:  from: 15653468    to: 15654983    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g41890.1    Description:  pseudogene, proline transporter 2, similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783 amino acid permease {Oryza sativa} Range:  from: 15655076    to: 15658904    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version