Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->YAB1            <--------HAHB4            <---------ICU4            --------->ATHB12         <----------ID1            <------------ATHB5       <------ZmHOX2a(1)          <---------AHL20(2)            -------->ATHB1         <---------TOE2(3)       <-------TEIL          ------>MYB46(1)          <---------TOE1(3)     <---------ARR11(3)          ------>MYB83             <---------------AtSPL8--------->ARR14(2)         --------->WOX13(1)    <---------DAG2            <---------ARR14(2)        ----------->GT1     <-----------GT1   <---------ATHB12     --------->YAB1--------->CCA1(2)   ---------->DOF2 -At4g35610--------->ICU4      <----------DOF2     <---------HSFB2a(2)     --------->ANAC58 >At4g35610<---------ATHB12  <---------------AGL15 --------->HSFB2a(2)     --------->ANAC58   acattttaaaccaatcattacacaaatgatacactttaaggaacaaaaatcatctcgaagatacatttttttttcacaagtaaagaagtaatatgcagtc  15610000                ---------->DOF2        ----------->GT1                                                                 ----------->GT1    ---------->DOF2                                                             ----------->GT1 --------->ANAC58                                                            <---------ANAC46     <-- --------->ANAC58                                                          --------->ZAT18        --- <---------ANAC55(2)                                                       --------->ZAT14        <-- --------->ANAC46        <----------DOF2                                   <---------ZAT14        --- --------->ANAC55(1)  --------->ARR11(3)                                  --------->ALFIN1        --- --------->ANAC55(2)  <---------ARR11(3)       ----------->GT1          <XXXXXXXXXXXXXXXXXXXXXMIR472-   tatacgtaaagagttaaacaaagagttctttttttttttttgtaacatcaagttactaacatgaaatgaaatgtgagtggagtagagaaaatgaaaaacc  15610100                                                                                 <------NtERF2                                                                                 ------>NtERF2                                                                                --------->LBD16                                                                                ------>NtERF2                                                                               <---------DEAR3(1)                                                                              <---------LBD16                                                                              --------->LBD16                                                                           <---------At5g28300                <------MYB83                                             --------->ARR14(2)                <xxxxxxxxxxxxxxxxsmallRNA(s)                             <---------ARR14(2)                ----------->GT1                                         <-------GAMYB                <------MYB46(1)                                         <-----------HVH21               ----------->GT1 <---------TOE2(2)                        --------->At5g28300 -------At4g35610            <---------SPL7                            <---------MYB46(3) ------>ZAT2   <---------MYB46(3)  <-----------GT1  --------->GLK1(2)<---------LBD16      --------->YAB1 -------ZAT2  --------->ALFIN1<---------MYB52(1)   <---------GLK1(2) ------>NtERF2        --------->ATHB12 -------->RAV1(2)          <------NtERF2       ---------->DOF2       --------->LBD16   --------->YAB1 ------>At4g35610         ------>NtERF2       <---------WRKY38(1)   ------------>AtMYB77 <---------YAB1 ---------->HVH21     <-----------RAV1(1)     <---------WRKY12     <---------LBD16<---------ANAC46   tgctgacgaacaccgagtgggtaaatgtcgccgtatgttacattccagtcaaagaatcggtatggactctccgcggttaccgcggcgaagaatgataggc  15610200                               ------->GAMYB                               --------->RAP2.6(2)                               --------->DREB2C(2)                               --------->ANAC46                               --------->DEAR3(1)                       ------>ZmHOX2a(2)                      --------->At4g35610                      <---------At4g35610                      <----------TaMYB80                      <------ZmHOX2a(2)                      --------->GLK1(1)                     <-----------ARR10                     <---------AGP1                     <---------ARR11(3)                     --------->ARR14(2)                     <---------ARR14(2)                    <---------CCA1(2)                    <---------ARR14(1) <---------YAB1                   --------->LBD16   <--------HAHB4                  --------->HSFB2a(2)<---------ICU4                 <---------LBD16    <---------ATHB12                ------>NtERF2 --------->MYB46(3)             <---------ANAC58              --------->ATERF1(1)   --------->ICU4           <---------ANAC46             <---------ATERF1(1)------>NtERF2              <---------ARR14(2)             ------>NtERF2    --------->DEAR3(2)           --------->ARR14(2)          <------MYB83<---------GLK1(1)--------->ICU4   <---------ANAC58          <------MYB46(1)    <---------ATERF1(1)       <------NtERF2         <---------AtMYB61  --------->ANAC46          ------>NtERF2         --------->ALFIN1   <---------ALFIN1         <---------DEAR3(1)       =======================HOX2a_HOX2a  <---------AHL20(2)<---------ANAC58    --------->AHL20(2)       <------ZmHOX2a(1)   --------->MYB46(3)     ----------->HVH21       ----------->GT1       ======================HOX2a_HOX2a  <---------YAB1<---------ANAC58----------->GT1   agaacaataggatggtgcctccggatctgcccaccgccatcatttttaatgaacgacggcgtttcttgtggagagagagaaaaaaaaatagagggagaat  15610300                                                                 <---------ANAC58                                                   ----------->GT1<-----------HVH21      <-------TEIL                                       --------->ANAC58          <---------ANAC46      <---------GLK1(1)                                       <---------ALFIN1         <-------TEIL        <---------ZAT14                                       --------->ANAC58    <---------AHL20(2) <----------------------                             <---------YAB1        <---------ANAC55(2)       --------->CCA1(2)        <------ZmHOX2a(1)  --------->CCA1(2)      --------->MYB59<---------ANAC58  --------->ALFIN1   gtaagtgtgaggaagagagagagtgagtgatatgaatagacacacacttagttatgtaaatttaagtgcgtcgagggagagacgagtggagttcatagac  15610400                                                                                --------->WRKY45                                                                                --------->WRKY38(1)                                                                                --------->WRKY12                                                                               --------->DOF5.7(2)                                                                              <-------GAMYB                                                                             <---------ANAC46                                                                        <-----------GT1                                                                     <---------ICU4                                                          ----------->GT1<---------At5g28300       *TSS                                    <-------TEIL         <---------AHL20(2)              <     ----------->RAV1(1)      <---------AHL20(2) <------------CBF   --------->AHL20(1)              -   <------NtERF2        <---------ZAT6    --------->AHL20(2)        --------->AHL20(2)           ---- -TaNAC69(2)  --------->AHL20(2)          <---------AHL20(2)       --------->AHL20(2)   <------------CBF   ttggccccaacaaaaaaaaaatagtagtataaatatttgagtatttaaatacattgatacaagttaaaaaaaaattactgcgttgacttaaattgtgaag  15610500                                                                               <---------WRKY18(1)                                     --------->AHL20(2)              ---------->DOF2         -------- ---------AHL20(2)      --------->AHL20(2)                       ----------->GT1        <-----------GT1 -------->ATHB51<---------AHL20(2)   <---------AHL20(2)         ---------->ID1--------->WRKY38(1) ----->YAB1<---------YAB1     --------->GLK1(2)         <---------AHL20(2)    --------->WRKY12-------   aataatttgaattcttattttttcaagaaaataatctaattaatcgaagtaatattagttaatttcgtcgtaaaaccgcattgactgttttcacaaccat  15610600                                                                              <---------GLK1(1)                                                           <----------DOF2    --------->GLK1(1)                                                       <----------DOF2      <------ZmHOX2a(1)                                                    ------>MYB83          --------->MYB59    --------->ARR11(3)                              ------>MYB46(1)     --------->ICU4    <---------GLK1(2)                             <---------MYB46(2)  --------->YAB1 ->MYB46(3)     --------->AHL20(2)                <---------MYB59     <---------ICU4        <-------- >GAMYB         <---------AHL20(2)             <-----------GT1       <---------YAB1        <---------   cgttcagatttttggtatttaatttttgtaatttagcagtttttttgtattaccaaactttctttcatcttataattaggaaatcaaactttgttaccct  15610700                                                                                                    -                                                                                                    -                                                                                                   <-                                                                                                   --                                                                         <---------ANAC46          --                                                                       <---------MYB46(3)          <-                       --------->AHL20(2)                          --------->MYB111(1)          <----                       <---------AHL20(2)                       <------MYB46(1)                <-----                       <---------AHL20(1)                       <------MYB83                  -------              --------->ATHB12      --------------->AGL15      --------->MYB59  --------->TOE2(3)  <-   --------->ANAC55(2) --------->AHL20(1)                      --------->MYB46(2)  --------->AHL20(2)   <---------ANAC46   --------->AHL20(2)                       --------->MYB111(1)--------->AHL20(2)- -At5g28300<---------ANAC58    <----------DOF2    --------->ZAT18  --------->MYB111(2) <-----------GT1 --GT1     <---------ANAC58<-----------GT1        <---------ZAT18 <--------P    <----------DOF2------   gttctacgtgttttcttgatttgaataaatttccttttcatcttatagttagtgagcaatttgagtaggtaagtggtttgaactttaaattacaaattaa  15610800     <---------TOE2(3) ------->ATHB1                                                                                    --- -------->ATHB51                                                                                ----- --------AHL20(2)                    <---------TOE2(3)                                        ------- ------->ICU4                     <---------YAB1                                             <------- ------->AHL20(1)       --------->ANAC58                                                   --------->YAB1 --------ATHB51         --------->ANAC46                                                  <---------YAB1 -----YAB1 <-----------GT1     <---------YAB1                                           <---------ICU4 ----AHL20(2)           --------->ANAC58                              <------ZmHOX2a(1)--------->ICU4 -->AHL20(2)           <---------LBD16                               <----------ID1    <---------YAB1 --------YAB1  <---------YAB1----------->GT1                      ---------->DOF2     --------->TOE2(3) -------->ATHB12--------->YAB1<-------GAMYB                   ---------->DOF2      ----------->RAV1(1) --->AHL20(2)--------->YAB1  <---------ZAT6              ----------->GT1          --------->REM1(1)   aattattgatgtttttcattataaacacggactgttattaatgctacaagggtgtctaagagtaaaaagaaaggacaaatggctacaacattattatcaa  15610900  Previous    Next  AGI:  At1g41830.1    Description:  SKS6 (SKU5 Similar 6); pectinesterase. similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS5 (SKU5 Similar 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G76160.1); similar to SKS7 (SKU5 Similar 7), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47501.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62000.1); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); conta Range:  from: 15606058    to: 15610407    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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