Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                          <---------GLK1(1)                                          --------->GLK1(1)                                         <---------ARR14(2)                                         --------->ARR14(2)                                         <---------ARR11(1)                                         <-----------ARR10                                         <---------ARR11(3)               <------ZmHOX2a(1)         <---------AGP1               ===================================HOX2a_HOX2a               ==================================HOX2a_HOX2a                   ------>MYB46(1)            <------NtERF2               <---------CCA1(2)                      ------>MYB83          <---------DEAR3(1)            <---------ARR14(1)                   --------->AtMYB61         <------NtERF2              --------->MYB52(1)                       <---------MYB111(2)        <-----------HVH21         ------->GAMYB                           <---------ALFIN1       <---------DEAR3(1)        --------->MYB46(3)                       --------->AtMYB61       <---------MYB46(3)      ----------->RAV1(1)                    <---------ETT(1)---------->DOF2 -------At4g35610             --------->REM1(1)          <---------ATHB12--------->MYB46(3)   agcagatggtcgtcggaggactcttgatgactacaacagaccggatctcttctattccaatcggtctgcaatccgaccacctacattcgaaagaagcgat  15593000                                               <---------AtLEC2                                           <----------DOF2                                          <---------DAG2                                       ------>MYB83                          --------->YAB1                                       ------>MYB46(1)                      <------ZmHOX2a(2)                                      <---------ALFIN1                ------>ZmHOX2a(1)                                     <---------MYB111(1)              =============HOX2a_HOX2a                                     --------->MYB46(3)         =============HOX2a_HOX2a              <----------DOF2        <---------MYB55(2)         <------ZmHOX2a(2)      <-----------GT1          --------------->AtSPL8          --------->ARR11(3) <---------TOE2(3)             <---------------AtSPL8          <---------ARR11(3)    <---------At4g35610   tttgagataaaccctgctttctatacactcttgtgagtacccacccttttcatggtctagcacaagatcatcctatcgatcatattgagcagtttgaaga  15593100                                                                 <---------LBD16                                                    <-----------ARR10                                                    --------->ARR11(3)     ------->TEIL                                                    <---------ARR11(3)   <-------TEIL                                              --------->AtLEC2 --------->GLK1(2)                                          ------>MYB46(1)     <---------GLK1(2)                 <xxxx                                          ------>MYB83        <---------ARR14(2)               <-----                               --------->At4g35610--------->ANAC58 <---------LBD16           --------              <---------TOE2(3)<---------At4g35610--------->ANAC58 --------->LBD16   <---------ANAC58     <---------ANAC46   --------->ALFIN1--------->AtMYB61     --------->ARR14(2)     <---------ANAC58   cttggtttcgagtattaaggcagaaggtgtttcttctgactaccttccctgcaagctcttcccatattctggggatgcatcttcttggcttaagcagttg  15593200                                                                                          --------->ARR11(3)                                                                                          <---------ARR14(3)                                                                                          --------->ARR14(2)          ----------->HVH21                                                               <---------AGP1       ------>ZmHOX2a(2)                                                     --------->At4g35610      --------->GLK1(1)                                                      --------->ZAT2    <-----      <---------GLK1(1)                                                      <---------ZAT2 <XXXXXXXX     --------->ARR14(2)               <----------DOF2                        <---------At4g35610     <---------ARR11(3)              <---------ANAC58                   --------->HSFB2a(2)--------->GLK1(1)     <---------ARR14(2)           <--------P                -------->HAHB4 ========================HOX2a_HOX2a     --------->ARR11(3)        <---------TOE2(3)           <---------YAB1  =======================HOX2a_HOX2a     <---------AGP1    --------->ANAC58                  --------->YAB1 <---------HSFB2a(2)<------ZmHOX2a(2)    <---------CCA1(2)  --------->ANAC58   --------->TOE2(3)--------->ICU4  <------ZmHOX2a(1)------>ZmHOX2a(2) xxxxxxxxxxxxsmallRNA(i)     ---------->DOF2       <----------DOF2     <---------TOE2(1)  <---------ARR14(2) ----REM1(1)           ----------->GT1<---------DAG2    <---------YAB1 <---------TOE1(1)  <---------ARR11(3) ->At4g35610         ---------->DOF2 <---------ANAC58 --------->YAB1<-----------HVH21     --------->ARR14(3)   aagcctggatctctgacaacttggaaagaaataaaggttgcttttcttaacaacttttataatgatgcaaggtccgaggagctgagaatgaagatctcta  15593300                          ---------->DOF2    <-------TEIL  --------->DOF5.7(2)              --------->At4g35610          <---------ARR14(2)                    <---------ZAT2              --------->ZAT2               <---------GLK1(2)     <---------At4g35610              <---------ZAT2           <------ZmHOX2a(2)<---------TOE2(3)        <---------At4g35610 ----CCA1(2)  <---------At4g35610<---------ANAC46   <------------CBF  *TSS      ------->TEIL XXXXXXXXXXXXMIR157A-C   <---------AHL20(2)--------->ARR14(2)    --------->At4g35610   tcttctctcaagaagcagctgaagaatttaaagccgcttggatcagattcagagcattgacgttatcagatggcattggatgcagctagtcatgggaatt  15593400                      ----------->RAV1(1)                    <-------TEIL             --------->LBD16            --------->HSFB2a(2)            <---------HSFB2a(2)        --------->GLK1(1)                                                              --------->ANAC46        <---------GLK1(1)                                          --------->ALFIN1    --------->ANAC58        --------->CCA1(2)        <---------WOX13(1)  --------->TOE2(3)                 --------->ANAC58       --------->ARR14(2)      --------->ATHB12   ----------->RAV1(1)           --------->ANAC58       --------->ARR11(3)     <---------YAB1<---------At4g35610 --------->DAG2  --------->ANAC58    <       <---------ARR11(3)   --------->YAB1  --------->At4g35610---------->DOF2<---------AtLEC2-------   tcatgtcaagatatccagaagatgcaacaatgttgattgacaacttagcttccaacattagtaccaaaagtgttgacattgcaaggaaaacgcaagttca  15593500                                 ---------->DOF2        <-------MYC3      =============================MYC_MYB               <---------ALFIN1        ------->MYC2      ==================bZIP_DOF                   --------->WOX13(1)        <-------MYC4      --------->O2               <-------TEIL  --------->YAB1               -----        ------->MYC3      --------->TGA1a           --------->CCA1(2)--------->At4g35610     <-------TEIL        <-------MYC2      --------->bZIP60(2)  ------->GAMYB      <---------ATHB12          --------- -----------RAV1(1)  <-----------GT1      <------ZmHOX2a(2)--------->At4g35610 --------->ANAC46 <---- -->ZAT14   --------->ETT(2)--------->ZAT14 ----------->RAV1(1) --------->WOX13(1)     --------->MYB52(1)   gtatgttgcacatgttgacagtttagccacttcagaaaagatggatcaacagagatacatgagcttcaatcagcaatctacacatcaaaaaccggttcag  15593600                                                     --------->ANAC46                                                     --------->ANAC58                                                     <---------ETT(1)                                                     ------->GAMYB                                                     --------->ANAC58                                                     ----------->HVH21                                                    <---------MYB55(2)                                                    --------->MYB46(3)                                                   --------->ANAC46                                                 <---------ALFIN1                                                --------->MYB46(3)                                              --------->ANAC46                            <---------GLK1(2)                                             <---------MYB55(2)                           --------->ARR14(2)                     --------->YAB1          --------->MYB46(3)           <-----------ARR10      --------->ANAC58                      <---------ALFIN1              --------->GLK1(2)      --------->ANAC58                    <---------ALFIN1                ------->TEIL    <---------ARR14(2) ---->At4g35610    --------->GLK1(2)     <---------ZAT18 ------>NtERF2<------ZmHOX2a(2) ----------->ARR10 >ARR14(2)<-------TEIL <---------YAB1 --------->ANAC58  --------->ANAC46  <---------ARR11(1)    ----- -----At4g35610--------->YAB1         --------->ANAC58  <---------ALFIN1 <---------ARR14(1)--------->GLK1(2)   caaactacaagcttcattcagaatcatgcttcttcaacacaagcccaccctccacccgacaccactaaaacgatcgaatctatgctcgaacagattctca  15593700                     <---------GLK1(2)                     <---------ARR14(2)                     --------->ARR14(2)                --------->MYB52(1)                ----------->RAV1(1)                                                           -------             --------->ANAC58                                                                 -------         --------->ANAC58                                              <-------TEIL           -------         --------->ANAC58<---------YAB1                               --------->CCA1(2)      -------- --------->WRKY18(1) --------->ARR11(3)                            <---------KAN4(2)       <------ZmHOX2a(2) ----->DOF2  --------->ANAC58           <--------P----------->HVH21----------->ARR10--------->ATHB12   aaggtcaagagaagcaaacaacagattttgatcacaaaactggttgcattatccgacgatgtgaatgggaagattcaaatattgaacaattggatcaagc  15593800                                                                                      ------>NtERF2                       <---------ANAC58                                            <---------At4g35610                       <---------ANAC58                                         ----------->RAV1(2) -->ANAC58            <-------TEIL                                          --------->At4g35610 -->ANAC58        <---------ARR11(3)                --------->At4g35610     <---------At4g35610 -->ANAC46        --------->ARR11(3)       --------->ALFIN1                <---------ARR11(3) ------- ->WOX13(1)---------->DOF2              <------ZmHOX2a(1)         <----------DOF2 ------>ZmHOX2a(1)   aattgactacaaacaaagaagatgttcgtgctattgacttaaggagtggaaaacagctaaatctagtgcttcaacgagagcttcctgcagccaaaattgt  15593900  Previous    Next  AGI:  At1g41825.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.9e-98 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 15593370    to: 15596582    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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