Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->LBD16                                              <---------LBD16                                       <---------WOX13(1)               <---------DAG2        --------->ATHB12                       <---------DAG2               <----------DOF2      --------->ICU4                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->DAG2             <---------YAB1                 <-----------RAV1(2)        ---------->DOF2           <---------ANAC58         <----------DOF2  <----------DOF2--------->ICU4   <-----------------AGL1         <---------ANAC58  <--------P    xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------GT1      <---------RAP2.6(3) <---------GLK1(1)     ----------->RAV1(1)       <---------YAB1   aattttaccaaaaaggcctttttgcagtcatccaggtcgtgattgaattctggggtagcatcttttcccacagatgggctttatctccaagtgataatgg  15559600                                                                                             --------                                                                                           ------>ZmHOX2a(1)                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                                                                       <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                                       --------->ARR14(2)                                                                                       <---------GLK1(2)                                                                                       --------->AGP1                                                                                       --------->ARR14(3)                                                                                       <---------ARR14(3)                                                                                      <---------GLK1(1)                                                                                      --------->GLK1(1)                                                                                ==================HOX2a_HOX2a                                                                                ------>ZmHOX2a(2)              <-----------GT1                     ----------->RAV1(1)         <---------ARR11(3)  --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                   --------->ICU4<---------ARR14(2)  --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxsmallRNA(i) --------->TOE1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <----------DOF2    --------->ARR11(3)   <x   aaacaagcgaagcttgaaaccatcttcactaactccattgattttagtaaggccacagggcctttcaaactcgtcaagatgatctagcagatcctccatt  15559700            <---------DAG2--------->ATHB12            <----------DOF2      --------->AtLEC2   --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <---------ANAC55(2) --------->ANAC58   --------->ANAC46                  --------->DAG2                             ---- --------->ANAC58  <---------LBD16                   ---------->DOF2                         -------- --------->ANAC46  ----------->RAV1(2)            ------>ZmHOX2a(2)        ----------->GT1   -------- ->ATHB12------->TEIL----------->HVH21     <----------DOF2<---------MYB46(3)              ----------- xxxxxxxxxxxxxxxsmallRNA(s)              <---------At4g35610      --------->ANAC55(2)     -----------   ggcaagccatgaaactttttcccctgaaccattgcaatgagacagcttttgatctaaaagttgttgttatgtactggaggtgaaacaattccatgacgct  15559800                                      <------MYB46(1)                                      <------MYB83                                     --------->MYB59                                     --------->MYB111(1)                                     <---------TOE1(2)                                     <---------TOE2(2)                                    <--------P                                  <------MYB46(1)                                  <------MYB83                                 --------->MYB111(2)    <-------GAMYB                --------->MYB111(1)   <---------MYB46(3)       ---------->DOF2  <---------TOE2(3)       --------->ANAC58  <---------AtMYB61       --------->ANAC58                                                      <---- ----->MYB52(2)        --------->At4g35610                                                      <---- ->ANAC58            <---------ICU4 <---------MYB55(1)                                          ----- ->ANAC58           --------->At4g35610                                 <---------ANAC46<---------MYB52(1) >TGA1<---------MYB46(3) ----------->RAV1(1)                 <-----------HVH21         <-------GAMYB< >HVH21             <---------At4g35610                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    -----   agttgtggttgtgagggaagtcatcagcaccaaagttggtaggtttctcttgctcatctacaatgtcagccattgtgtctatttttgtctgttatctcag  15559900         --------->ZAT14         <---------ZAT14         <---------ZAT18                       <---------ANAC58         --------->SPL1(2)                     <---------ANAC58         --------->SPL7                    --------->GLK1(1)       <---------SPL7                      <---------GLK1(1)         *TSS                   ---------     <---------------AtSPL3          --------->GLK1(2)               ------>ZmHOX2a(1) <---------At4g35610 <---------ANAC58                    <---------ARR14(2)            ----------->RAV1(2)<---------YAB1 <---------ANAC58                  --------->HSFB2a(1)            ------>NtERF2    --------->ARR14(2) <---------ANAC46                  --------->HSFC1(2)       --------->ARR14(2)     <---------ARR14(2) -----ZAT2                         <---------HSFB2a(1)      <---------ARR14(2)   <---------MYB46(3) -----At4g35610                    <---------HSFC1(2)<---------At5g28300        --------->ALFIN1 ---->ZAT2            <---------YAB1 --------->ARR14(2)    <---------CCA1(2)========================= ------NtERF2 <---------MYB46(3) <------ZmHOX2a(1) ----------->HVH21 ==============HOX2a_HOX2a ---->At4g35610       <---------TOE2(3) <---------YAB1    --------->REM1(2) ------>ZmHOX2a(2)   ttggcgagcagtacggtcgatgttatcgttgaataggaggttctgatttccttgtgaccgtgtatcgcctcctggtgatcgagtggttctgatgaggtga  15560000                 <---------ANAC58                 <---------ANAC46                 ----------->GT1                 <---------ANAC58             <-------GAMYB             <------------CBF       <---------GLK1(2)      <---------ANAC58      <---------ZAT2 --------->LBD16      <---------ANAC58      <---------At4g35610                       <---------ZAT2  <------NtERF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------LBD16              --------->ZAT2 <xxxxxxxxxxxxxxx ------>ZmHOX2a(1)          --------->At4g35610<--------P   ----------------------->TaNAC69(2)<------ -->GT1   --------->HSFB2a(2)  --------->At4g35610         --------->ATHB12         <---------DEAR3(1) =======HOX2a_HOX2a         --------->ZAT2<---------LBD16 --------->ICU4        ------>ZmHOX2a(1) <--   ttcctctggcttcgcgattgagtgaaactgagctgctagcttctccggggttgcgatagaatgatttgccctagcagggctcctaggctgcgatagagta  15560100              --------------------->WRI1            <------NtERF2      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxx>smallRNA(s)                                             ------->TEIL  <---------At4g35610                                                       --------->MYB52(1)  --------->At4g35610                                                  ---------->DOF2 xxxxxxxsmallRNA(fl3)     <-----------GT1                     ---------->DOF2 ---ZAT18  <-----------HVH21         <XXXXXXXXXXXXXXXXXXXXMIR415--------->ANAC58                    - --------DOF2--------->ATHB12<----------DOF2   ------>ZmHOX2a(1)--------->ANAC58         --------->AHL20(2)   cttttgctgaaggcgtcattgggcattttgactttctgttctgtttctcctctgtttaaactccaaaagcatccaaagtacctgaaaacaactaaatatg  15560200              ------>ZmHOX2a(1)            --------->YAB1      --------->ANAC58      --------->ANAC46      --------->ANAC58     ------->PIF4     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <-------MYC4     ------->PIF5     <-------PIF4     <-------PIF5                                                                                  xx     <-------MYC3                                                                                 ---     <-------MYC2                                                                                ----     ------->MYC3                                                                             xxxxxxx     ------->MYC2                                                                             xxxxxxx    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       --------   ------->TEIL                                                     --------->At4g35610   --------->YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      ------>ZmHOX2a(1)          xxxxxxxxxxxx <---------ZAT18                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxx -------->AtLEC2                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxx   caatgcacatgcaatcctaatgcaaaatcgtcccctaagtatgcaaaacacactaaaacgactcctaatgagatgaaatgtggatgaaacaatgacaaag  15560300 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->GT1 ----->ALFIN1         --------->ANAC58                                    --------->ANAC58 xxxxxxxxxxxxxxxxx>smallRNA(se3)                                          --------->ANAC46 xxxxxxxxxxxxxxxx>smallRNA(fl3)                                           --------->ANAC58 -->DOF2  ------->TEIL--------->ANAC58                                  ---------->DOF2 xxxxxxxxxxx>smallRNA(si3)                                        --------->ANAC58 xxxxxxxxxx>smallRNA(si3)                                         --------->ANAC58 xxxxxxx>smallRNA(se3)--------->AtLEC2                          <---------ANAC58                ----- xxxsmallRNA(l2)   <---------ATHB12                             <---------ANAC58   <------ZmHOX2a(1)   tggtgaagaatgaatgcctaaatcatgcaaattatagacatatcaactctcccaaacgtagtctttgctcgccctcaagcaaacaggaagacataagcga  15560400                                                                    --------->MYB52(1)                                                      <------ZmHOX2a(2)                                                     <---------ARR11(3)                                                     --------->ARR11(3)                                          ----------->HVH21       <---------MYB52(2)                            --------->AtMYB61      <---------YAB1--------->ZAT2                   <---------ARR14(2)   --------->CCA1(2)        --------->At4g35610                <---------ANAC46       --------->ARR11(1)    ------->TEIL               <---------LBD16         <---------ARR11(3)   <-----------GT1              --------->ALFIN1   --------->YAB1  --------->YAB1  <---------At4g35610   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR11(3)--------------->AtSPL8  --------->CCA1(2) ----->DOF2  --------->ALFIN1---------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         ------>ZmHOX2a(2)   aaggagaggtttgaagttggggattcaaaaccaaagcataagatatgacaattaagatcaatgtaccagctaacaattctaagatgcgaggtgatcgact  15560500  Previous    Next  AGI:  At1g41795.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 3.6e-264 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 15556958    to: 15559969    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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