Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               ---------->DOF2                --------->LBD16          ------>MYB46(1)               <---------ANAC46          ------>MYB83         --------->REM1(1)             <---------MYB111(1)     <---------ANAC58                  --------->MYB46(3)     <---------ANAC58                  --------->AtMYB61     <---------ANAC46                  <---------MYB111(2) <---------ANAC58      <-----------GT1 <---------MYB55(2)       --------->MYB59                     < <---------ANAC58   ----------->GT1    <---------ALFIN1    <---------AHL20(2)                     --- ------->ARR11(3) --------->ZAT14 ------>ZmHOX2a(2)    --------->YAB1    --------->MYB46(3)       <-- --------ARR11(3)<---------MYB52(1)   --------->MYB46(3)  --------->AHL20(2)                ------>ZmHOX2a(2) -WRI1   <---------ALFIN1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->REM1(1)--------->ARR11(3)   agttcttgcttacacctccgtgaagtaactagttgatcccaccaactcaaagcatagtcataaaattcggtagcaacaactcttaccctattgatctcgg  15523200                                                           <------ZmHOX2a(2)                                                          <---------ARR11(3)               --------->TOE1(3)                                                       --------->HSFB2a(2)   ----------->GT1     ----------->GT1                                 ----------->RAV1(2)    --------->ALFIN1     ----  <---------ZAT6                                     --------->At4g35610    <---------AtMYB61    <--- ---------ANAC46                                    --------->GLK1(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>ZAT14                      ---------->ID1--------->ANAC58    <---------AtLEC2    <---------TOE2(3) -------ZAT14    >>>>>>>>>MYB2  <----------DOF2  --------->ANAC58 <-----------GT1        <---------TOE1(3)   tgtagtgttgaaaattgaaaaccaattcaatcttcttttcccattccaaataagcatctggatcattttttccatggaatggtggaattttaagcttaag  15523300                      --------->GLK1(1)                      <------ZmHOX2a(2)                     <---------ARR11(3)                     --------->ARR11(3)                     <---------AGP1                                           <---------GLK1(1)             --------->AtLEC2                                                 --------->GLK1(1)           <---------ANAC58                                                  --------->ARR11(3)           <---------ANAC58  --------->TOE2(3)                     <---------ANAC58------>ZmHOX2a(1)      <---------GLK1(2)------>ZmHOX2a(2)--------->ANAC58           <---------ANAC58================== ----->ARR11(3)     --------->RVE1(1)   --------->ANAC58     <---------YAB1  <---------ARR11(3) ------ARR11(3)  ---------->DOF2--------->ATHB12        ------>ZmHOX2a(1)---------->DOF2   acctccaagattgtcttgcaaaagatctctaccttcattagcacgtctatggtgtctcctatgactattgcgagataaagagctcctatgcccatagtac  15523400                <----------DOF2            <---------CCA1(2)          --------->REM1(1) <---------At4g35610         <-------TEIL       --------->At4g35610 ------>ZmHOX2a(2)       <---------ZAT2    <----------DOF2      --------->ZAT18                     - =======HOX2a_HOX2a      <---------At4g35610           <------ZmHOX2a(1)                           --   tgatctgtagcttcatctctttgctcaagctgctcatcaactcttctttgtactcgaggacgagtctgccctaattctagtttctcatgaaacacttggc  15523500                      <--------HAHB4                                <---------MYB52(1)             <---------ANAC58                                       <--------P             <------MYB46(1)                               <---------ANAC58             <------MYB83                                  <---------ANAC58             <---------ANAC58                         <---------REM1(1)            <---------AtMYB61                         <---------MYB46(3)            --------->MYB111(2)                       <-----------RAV1(1)            --------->MYB46(2)                      <-------GAMYB  <-------GAMYB          <---------MYB52(1)   ---------->DOF2     --------->MYB52(2) --------->ANAC58     <---------ICU4               <---------MYB46(3) --------->MYB52(2) --------->ANAC58    <---------ATHB12        ---------->DOF2      <---------MYB46(3) -------->DAG2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1       ------>ZmHOX2a(1) -------->DOF2     --------->WOX13(1)      --------->AtMYB61     <---------TOE2(3)                 <-   gaaaagcattcagtttggtgtccatcattttctcaaaggcttccaccaaaagtttgttgttgcgattgtggttagtctcttcctcttcagtttcagccat  15523600                                                                                      <---------ICU4                                                                                     ------>ZmHOX2a(1)                                                                                     <---------YAB1                                                                        <---------GLK1(1)                                                                        --------->GLK1(1)                                                                       --------->ARR14(2)                                                                      --------->At4g35610                                                                  <-----------HVH21--------->YAB1                                                       --------->ANAC58<---------ARR14(2)      ------                                         <----------DOF2   --------->MYB46(3)    --------->GLK1(2)                             --------->ANAC46          --------->ANAC58<---------GLK1(2)   <---------YAB1               *TSS       ----------->RAV1(1)    <---------MYB52(2)   <---------At4g35610<-----------GT1 ---------DOF2 ----------->RAV1(1)    <---------ARR11(3)   --------->DEAR3(2)   <---------GLK1(2)   <   tctttctgcaatagagacaacaaaacaacaccagtaactagttcttttgaaacaaacacgaacagacccttcagataccctagaatcctaattacgatag  15523700                                                                                           <-------GAMYB                           ------>MYB83                                               ----------->HVH21                           ------>MYB46(1)                                           <-----------HVH21                         <---------MYB111(1)                             <----------DOF2   <---------At4g35610                         <---------MYB59                           --------->ZAT14 --------->TOE1(2) --->MYB52(2)----------->GT1                                       <---------ZAT18 --------->TOE2(2) -----------GT1        -------->P                            --------->YAB1       ----------->RAV1(2)   tttcacttgttgggatgctaaaaactaccaaatcgtttccaaatatttcagaaattttttcaaaaatagtagactcttttccaaacctgtgacagttgat  15523800                             <---------AHL20(2)                           <---------YAB1                     --------->AHL20(1)                     <---------AHL20(1)                     <---------AHL20(2)                     --------->AHL20(2)                  --------->WOX13(1)              --------->ANAC46     <---------AHL20(2)              --------->ANAC58    --------->AHL20(2)              --------->ANAC58--------->ICU4                <---------GLK1(2)              --------->ANAC55(1) <---------AHL20(2)        --------->ARR14(2)            <---------ALFIN1--------->YAB1                  <---------ARR14(2)        <-----------GT1  --------->AHL20(2)        --------->ANAC58       <-----------GT1   --------->YAB1            --------->ANAC58      <---------AHL20(2)<---------YAB1           --------->MYB52(1)                  ----------->GT1     --------->YAB1 <---------ATHB12        ----------->HVH21           ---------->DOF2   ttcgcaattttaacacacgccaattaattataaaaattaaatgaaggtgacagacggaaacagatttgaagatgaaaagacacaaaatggtgagattgaa  15523900                                         ------>ZmHOX2a(1)                                       ------>ZmHOX2a(2)                                       ================HOX2a_HOX2a                                      <------ZmHOX2a(2)                                         -----                                     --------->ARR14(2)                                        <-----                                     --------->AGP1                                            <-----                                     <---------GLK1(2)                                    ---------->DOF2                                     --------->ARR11(3)                                  ----------->HVH21                                     <---------ARR11(3)                               <---------ANAC46                                     <---------ARR14(2)                              <------NtERF2  <                   XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1                                 <---------MYB46(3)                  <----------DOF2   <---------GLK1(1)                              --------->ALFIN1 -              <---------ZAT18       --------->GLK1(1)                              <---------RAP2.6(2)              --------->ZAT18      ----------->ARR10                       <------ZmHOX2a(1)   ------              <---------ZAT14 --------->ICU4    <------ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <----------DOF2   <-----------GT1=================HOX2a_HOX2a  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   gactcaactttcagagtgtgctttgataccacatgatgagatcctcccaaggactcgacattcttaagttgagcaaaggatagaggtggctgtgaagccg  15524000                                               ---------->DOF2                                     --                                            --------->HSFB2a(2)                                    --                                            <---------HSFB2a(2)                                    --        ------>ZmHOX2a(2)               <---------ANAC58                                       ------ ---->LBD16                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                      ------ ----ANAC58                  --------->GLK1(1) --------->ARR14(2)                        --------->CCA1(2) ----ANAC58                  <---------GLK1(1) <---------ARR14(2)                       <---------ARR14(2) ---------YAB1      ------->TEIL        <---------ANAC58                   <---------TOE2(3)   ------ -------->ICU4 <---------AtLEC2        --------->HSFC1(2)                 --------->MYB52(1) -------- ----->GT1 --------------------->WRI1  <---------HSFC1(2)        ---------->DOF2        --------->ARR14(2)   tgataatggatcgatttgaatgaatcgatggatatcacagaagcttgcagaaaggcttcaaaataccaaaagagactaagggttttgctggatatacaca  15524100  Previous    Next  AGI:  At1g41746.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.3e-09 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) Range:  from: 15521139    to: 15523615    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version