Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                        <xxxxxxxxxxxx                                                                                     <---------ZAT18                                                                                     <---------PCF2                                                                                     --------->ZAT18                                                                                    xxxxxxxxxxxxxxxxx                      --------->MYB46(3)                                           <---------DEAR3(1)                    --------->MYB52(1)                                             <---------RAP2.3(3)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                <---------MYB46(3)                <-------TEIL                                                       xxxxxxxxxxxxxxxxxx                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             --------->ALFIN1             <------MYB46(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <------ZmHOX2a(1)<xxxxxxxx             <------MYB83xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->MYB46(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->MYB59   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)        <---------ZAT6xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)< -----MYB46(1)xxxxxxxxxxxxxxxx>smallRNA(i)       >>>>>>>ZML2  <---------LBD16  xxxxxxxxxxxxxxxxxxxxxx -----MYB83 --------->MYB111(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(i)<   ttggtagaaagtgttaggttcgtaacgacagagatagtgtctcatgtagttctagttcgcgttcttcggactggataggactaggtgggcgcttatatca  15484900   <------MYB83   <------MYB46(1) <<<<<<<<<MYB98 <--------P -CCA1(2) ----------->GT1                                                --------->At4g35610 xxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxx>smallRNA(si3)                                     --------->GLK1(1)  ---------->DOF2     ----- xx>smallRNA(si3)                            <------ZmHOX2a(1)           <---------At4g35610    <---- xxxxxxxxxxxxxxxsmallRNA(si3)<---------GLK1(1)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       ----- ---------ANAC58             --------->GLK1(1)---------->DOF2           --------->ANAC58       ------ >smallRNA(si3)---------->DOF2  --------->ATHB12    ---------->DOF2     --------->ANAC58     -------- ---------ANAC58    ---------->DOF2          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ----------->GT1   tgggttgggatgtgtttaaaagaaaagagggaattcattgttgatgaggaaagggaaagaattctaggggaagtaagctaaagaagttagaaaaaaaaaa  15485000                                                 ---------->DOF2                                              --------->At4g35610                                       <---------ANAC58                                       <---------ANAC58                                      <-------TEIL     <---------TOE2(3)               --------->ARR11(3)     <---------TOE1(3)               --------->ARR14(2)                <---------MYB52(1)   ---------->DOF2                   --------->GLK1(2)          ---------->DOF2 ---->GLK1(2)                        <---------ARR14(2)    ----------->GT1      <---------TOE2(3) -----ARR11(3)            ---------->DOF2     <---------At4g35610     <----------DOF2               < ---->ARR11(3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-- --->RVE1(1)         ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ---------->DOF2    --- ->AHL20(2)      ----------->GT1  <---------TOE2(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---   tctagtaaaggttttgggaatgttaaagaaaagaatgaggttcttgttagctaaagaagaagggttaaaagcctttggttttaaagataaaaaaaaacag  15485100           ---------->DOF2       <---------MYB46(3)                                       <---------ZAT6    --------->MYB52(2)                                 <xxxxxxxxxxxxxxxxsmallRNA(i) --------->TOE2(3)        --------->ANAC58            <---------GLK1(2) --------->TOE1(3)        --------->ANAC58           <---------HSFC1(2) ---------HSFB2a(1)       --------->ANAC46           --------->HSFC1(2)               --------->YAB1 -------ARR14(2)       --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->CCA1(2) ------>ARR14(2)--------->GLK1(1)                 ---------->DOF2         ---------->DOF2           x ---ZmHOX2a(1)  <---------GLK1(1)           <-------GAMYB    ------>ZmHOX2a(1) ---------->DOF2-------   gaaccttagttgttaaagaaatccaaacccgctagatgtatgagagcgttgagaaagcttctcctagagttaagagaaaagaaaagaatgatatgaaaaa  15485200                                                                                               <-----                                                                                              <------                                                                                              -------                  --------->ZAT18                                                             -------                  <---------ZAT14                                                             <------              --------->ATHB12            <-----------RAV1(2)                                *TSS             <---------YAB1              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------LBD16  <--           --------->YAB1    ----------->GT1                                     xxxxxxxxxxxxxxxxxxxx          <-------TEIL       <---------ZAT6     --------->ALFIN1          <---------YAB1    <xxxxxxxx xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ----------->HVH21 <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --->DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------ZmHOX2a(1)        <------------CBF<--------P-----   gagtttgaaagattcatgagtgcaaagggtagagttaagttgggacaggagttgggattaccattagaacttcattgttatactctgggtagatgggatc  15485300                            <----------DOF2                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      xxxxxxxxxxxxxxxx>smallRNA(s)                      <xxxxxxxxxxxxxxxxsmallRNA(i)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(i)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <x               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               <xx           xxxxxxxxxxxxxxxx>smallRNA(i)                                                           <xx           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     <xx           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <---------ARR14(2)               <xxx          --------->YAB1 -------->P       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <xxx --------->ZAT6xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              --------->ARR14(2)               <xxx -ZmHOX2a(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)                    <---------GLK1(1)                 <xxx ---ARR14(2)  xxxxxxxxxxxxxxxx>smallRNA(i)---------->DOF2      --------->GLK1(1)               <xxxxx -->ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------YAB1                           <xxxxx -->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ICU4         <---------ANAC55(2) <----- ---ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    -------->ATHB1         --------->ANAC55(2)<xxxxxx -------CCA1(2)xxxxxxxxxxxxxxxx>smallRNA(i)         --------->YAB1      <---------MYB52(1)    <xxxxxx xx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)    --------->WOX13(1)    <-----------HVH21     <xxxxxxx xxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------TOE2(3)               <xxxxxxxx ->ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ATHB12 ----------->RAV1(2)     <xxxxxxxx   ttatctctatatgcataacttgggacttacctttagcattctactaaagctcaatcattcttgaggtatcccctgttacttaagcctattgtgtaaggga  15485400                          <xxxxxxxxxxxxxxxxsmallRNA(i)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->TOE1(3)                     --------->TOE2(3)                     <---------DAG2            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <----------DOF2 <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(se3)                                     --------->LBD16 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <---------HSFC1(1)             <-- xxxxxxxxxxxxxxxxxsmallRNA(se3)                                    --------->HSFB2a(2)         <----- xxxxxxxxxxxxxxxxsmallRNA(se3)                        <---------WOX13(1)       ------->TEIL  <------MYB83 ----PCF5   <---------WRKY18(1)                --------->ZAT18     --------->HSFC1(1)        <------MYB46(1) xxxxxxxxxxxxxxxxsmallRNA(se3)            <---------TOE2(3)        <---------HSFB2a(2)       -------- xxxxxxxxxxxxxxxxxsmallRNA(se3)          --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(s)---------->DOF2 < xxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------WOX13(1)   <-----------GT1 <---------ATHB12<-------- xxxxxxxxxxxxxxsmallRNA(si3)         --------->ATHB12<---------ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(se3)       <-------TEIL     <---------ANAC58       <---------YAB1 <---------WOX13(1)   ccatctttgtctcttgaccttcaccttagccaaatgagttcattgatgatgcactgcttgattcacgttccagaactaatgaatgttaaagggattggta  15485500               <------MYB46(1)               <------MYB83              --------->MYB59              <---------AtMYB61           --------->ALFIN1          <-------MYC3                                     <---------TOE2(3)          ------->MYC3                          --------->ANAC58   ---------->DOF2                       --------->YAB1    <---------TOE1(3) -------ARR14(2)    <---------ANAC46   <---------WOX13(1) <---------DOF5.7(2) ---P     <-------MYC2             <---------WOX13(1)     --------->MYB52(1)       <---------CCA1(2) --->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58                 --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ATHB12<------NtERF2              <---------ATHB12    - -AtMYB61 ------->MYC2       --------->CCA1(2)  --------->ANAC46              --------->WOX13(1)  ---   gatttgaaagcatgtgtaggtcgagtataagagacggattgattgataacaaggcagggctaacgtttttgagtagaattcaatcatatcgcatcttaga  15485600                                                        ------>NtERF2                                                       --------->ANAC46                                                       <---------ALFIN1                                                       --------->DEAR3(1)                                                      <------NtERF2                                                      <---------LBD16                   --------->AHL20(2)        xxxxxxxxxxxxxxxx>smallRNA(i)                   <---------AHL20(1)    <---------AtMYB61 <-----------HVH21                   <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    -------->P <---------AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(i)    ------>MYB83  --------->AHL20(2)   <----------DOF2--------->ATERF1(1)    ------>MYB46(1)--------->AHL20(1)xxxxxxxxxxxxxxxx>smallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------MYB111(1)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ALFIN1                  <-----  <---------MYB111(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ANAC46               <------ ------->P    --------->AHL20(2)--------->YAB1       <---------ATERF1(1)------>ZmHOX2a(1)     <------ ------>MYB46(3)  <---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   ------>ZmHOX2a(1)          <------   actaccaacttggacattaattttatttgctctatcatatgctttggttctgagtccccgccttcactcctctccttcaactatgtcttcttatttgctt  15485700                                                                                              -------                                                                                            <--------                                                                                           <---------ARR11(1)                                                                                          <---------CCA1(2)                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <---------ANAC58                                                                                        <---------ANAC58       ---------->DOF2                                              <---------ICU4      <---------ANAC46       <xxxxxxxxxxxxxxxxsmallRNA(i)                                <---------YAB1       --------->ANAC55(2)    --------->ANAC58                                             --------->YAB1         <---------ANAC55(2)    --------->ANAC58                             xxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxx -----DOF2                                    <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---ANAC46                                    <---------AtLEC2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---ANAC58                                    <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---ANAC58     <---------TOE2(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------ZAT14 ----   gagggcaagcaaagactaagtttgggagagttgatatgtctataatttgcatgttttcagtgtccattcatcatcgttttgagtccagtttcgtatcatt  15485800  Previous    Next  AGI:  At1g41680.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 15485293    to: 15486498    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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