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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      xxxxxxxxxxxxxx
                                                                                      <xxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                   xxxxxxxxxxxxxxxxx
                                                                                 <---------DAG2
                                                                                 --------->TOE2(3)
                                                                                 --------->TOE1(3)
                                                                        <---------WRKY18(1)
                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                         <------ZmHOX2a(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                         <---------GLK1(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                         --------->GLK1(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                        --------->ARR14(2)               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2 <---------ALFIN1
                        <---------ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
              <---------YAB1       --------->ANAC55(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
            --------->YAB1         <---------ANAC55(2) <---------PCF5   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)
            <---------ICU4      <---------MYB52(1)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
            -------->ATHB1------>ZmHOX2a(2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
           <---------ATHB12    <-----------HVH21      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
         --------->WOX13(1) ----------->RAV1(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <
  ---------->DOF2      xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ---
  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---
 
tctactaaagctcaatcattcttgagggatcccctgttacttaagcctattttgtaagggaccatctttgtctcttgaccttcaccttagccaaatgagt  15478500
                                                                           <------MYB83
                                                                           <------MYB46(1)
       --------->ZAT18                                                    <---------AtMYB61
  <---------TOE2(3)         --------->LBD16                               --------->MYB59
 --------->YAB1            --------->HSFC1(1)                          --------->ALFIN1
xxxxxxxxx>smallRNA(le3)    --------->HSFB2a(2)                 ---------->DOF2  <---------ANAC46
xxxsmallRNA(i)             <---------HSFC1(1)             <---------ARR14(2) <XXXXXXXXXXXXXXXXXXXXXMIR833-5P
xxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)           <--------P     <-------MYC3
xxsmallRNA(s) <---------WOX13(1)            ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxx>smallRNA(se3)       <---------HSFB2a(2)       <------MYB46(1)  ------->MYC2                 <
---------WOX13(1)   <-----------GT1    ------->TEIL  <------MYB83     <-------MYC2               ---
------>ATHB12<---------ANAC58       <---------YAB1 <---------WOX13(1) ------->MYC3             <----
----TEIL     <---------ANAC58       <---------ATHB12 ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
 
tcattgatgatgcactgcttgattcacgttccagaactaatgaatgttaaagagattggtagatttgaaagcatgtgtaggtcgagtataagagacagat  15478600
                   <---------TOE2(3)                                <xxxxxxxxxxxxxxxxsmallRNA(i)
        --------->ANAC58                                        ------>MYB83                    <xxx
        --------->ANAC58                                        -------->P                    xxxxxx
        --------->ANAC46                                        ------>MYB46(1)             --------
 --------->YAB1    <---------TOE1(3)       <---------CCA1(2)  <---------MYB111(2)     <xxxxxxxxxxxxx
---------WOX13(1) <---------DOF5.7(2)    --------->YAB1       <---------MYB111(1)    <xxxxxxxxxxxxxx
------>ATHB12     --------->MYB52(1)    <---------ATHB12    -------->P         <---------AHL20(2)  <
-----WOX13(1)   <---------MYB52(2)    --------->WOX13(1)  --------->MYB46(3)   --------->AHL20(2)xxx
 
tgattgataacaaggcatagctaacgtttttcagtagaattcaatcatatcgcatcttagaactaccaacttggacattgattttatttgctctatcata  15478700
                ------>NtERF2
               <---------ALFIN1
               --------->DEAR3(1)
               --------->ANAC46
              <------NtERF2
              <---------LBD16
     xxxxxxxxxxxxxxxx>smallRNA(i)
 <---------AtMYB61 <-----------HVH21
<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              ---------->DOF2    <-------GAMYB
xxxxxxxxxxxxxsmallRNA(i)                                        --------->ANAC58      <---------At4g35610
xxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------LBD16
->YAB1       <---------ATERF1(1)------>ZmHOX2a(1)               --------->ANAC58<---------ANAC46
xxxxxxxsmallRNA(se3) <---------ALFIN1                  <----------DOF2         --------->ALFIN1
xxxxxxxxxsmallRNA(fl3) --------->ANAC46               <---------ANAC58     <xxxxxxxxxxxxxxxxsmallRNA(i)
----------DOF2--------->ATERF1(1)                     <---------ANAC46     <---------TOE2(3)
xxxxxxxxxxxxx>smallRNA(i)  ------>ZmHOX2a(1)          <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
 
tgctttggttctgagtccccgccttcactcctctccttcaactatgtcttcttatttgcttgagggcaaacaaagactaagtttgggggagttgatatgt  15478800
                                                      --------->WOX13(1)
                                                    <---------YAB1
                                                   <---------ARR11(1)
                                                  <---------CCA1(2)
                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                <---------ANAC58
                                                <---------ANAC55(2)
                                                <---------ANAC46
                         --------->YAB1         --------->ANAC55(2)
                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <---------ANAC58
                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <---------ANAC58
           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC58                     <---------YAB1
         <---------ARR14(2) <---------ICU4    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ICU4
         --------->ARR14(2)<---------YAB1<---------ZAT14 --------->YAB1         --------->YAB1  <---
 
ctataatttgcatattttcagtgtccattcatcatcgttttgagtccagtttcgtatcattcatcactgttttatatcatttctcatcatgcttgcatac  15478900
                                                                                                   <
                                                                                                 <xx
          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                 xxxxx
         <------ZmHOX2a(1)                                                                     <xxxx
        <---------YAB1                                                               xxxxxxxxxxxxxxx
     *TSSxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
   --------->ATHB12                                         <---------At4g35610     --------->CCA1(2)
  <---------YAB1                                            --------->At4g35610   xxxxxxxxxxxxxxxxxx
  --------->ICU4                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxx
 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               xxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ------
<-----------------AG                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxx
<---------AtLEC2                 <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <-----
<---------ANAC58                <---------GLK1(1)<---------At4g35610  --------->ANAC46       <xxxxxx
<---------ANAC58      <-------TEIL               --------->At4g35610  --------->ANAC58  --------->ANAC58
-------DOF2    <----------DOF2 <----------DOF2 <-----------RAV1(2)    --------->ANAC58  --------->ANAC58
 
tttgcatgattaggatagctttgcatacatattgcatttctgagttgttttcaggtgatttggagctgtttgcaagcaaattggaagaaacgagccagaa  15479000
                                                                                      <xxxxxxxxxxxxx
                                                                                    --------->ANAC58
                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)
                                                                               <---------ZAT2
                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxsmallRNA(i)
                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                             <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->TOE2(3)
                           xxxxxxxxxxxxxxxx>smallRNA(s)                 --------->ARR14(2)
                           <xxxxxxxxxxxxxxxxsmallRNA(i)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                      <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------ARR14(2)
                    <-----------HVH21                                  xxxxxxxxxxxxxxxx>smallRNA(i)
                   --------->ZAT2                                     xxxxxxxxxxxxxxxx>smallRNA(s)
                 <-----------RAV1(2)                                 xxxxxxxxxxxxxxxx>smallRNA(i)---
                 <---------ALFIN1                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->TOE1(3)  ------
xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(i)          --------->ZAT2 --------->ZAT2<xxxxxx
xxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ZAT2 --------->At4g35610
xxxxx>smallRNA(se3)<---------ZAT2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxx>smallRNA(fl3)<----------DOF2                  xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxx
--->ARR14(2)    xxxxxxxxxxxxxxxx>smallRNA(s)                  <---------ALFIN1 <---------At4g35610
xxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <-----------RAV1(2)   --------->ANAC46
----ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58
xxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)        xxxxxxxxxxxxxxxx>smallRNA(s)<---------ZAT18
 
ccagaagacatactcgacccccaggtcgagtgactttggagccattcttcccacatactcgacccccaggtcgagtaacctcagctcaggccactcgatg  15479100
                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                 --------->ANAC46
                                 --------->ANAC58
                                 --------->bZIP60(2)
                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  ------
                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <------
                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxx
                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <xxxxxxxxx
                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxx
                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxx
                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           ----------->RAV1(2)
               xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxx>smallRNA(s)
          ----------->RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)                      xxxxxxxxxxxxxxxxxxxxx
         xxxxxxxxxxxxxxxx>smallRNA(s) ----------->RAV1(2)<---------ATHB12      xxxxxxxxxxxxxxxx>smallRNA(s)
        xxxxxxxxxxxxxxxx>smallRNA(s)--------->AtMYB61   ------>MYB46(1)      <xxxxxxxxxxxxxxxxsmallRNA(i)
      <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ALFIN1    ------>MYB83        <xxxxxxxxxxxxxxxxsmallRNA(i)
     <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ALFIN1      --------->WOX13(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)
    <xxxxxxxxxxxxxxxxsmallRNA(i) --------->ANAC58     --------->AtMYB61<-----------GT1   <xxxxxxxxxx
xxxxxxxxxxsmallRNA(se3)     --------->ANAC46     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxx
------>ZAT6   <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
----->HVH21   <xxxxxxxxxxxxxxxxsmallRNA(s)    --------->ZAT6       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->REM1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ALFIN1 <<<<<<<<<TAC1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
 
acactactcgaccccctggtcgagtatcacttcgccacaccacctgataacactcgaccaatcactctaccaagttactcgaccccctggtcgagtatca  15479200
                                   <------ZmHOX2a(2)
                                  <-----------HVH21
                                <xxxxxxxxxxxxxxxxsmallRNA(s)
                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     -------->P
                           <---------ARR14(2)                      <xxxxxxxxxxxxxxxxsmallRNA(i)
                           --------->ARR14(2)                 <xxxxxxxxxxxxxxxxsmallRNA(s)
                         ----------->HVH21                    --------->ZAT18
            --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ZAT18
      xxxxxxxxxxxxxxxxxx>smallRNA(se3)                        --------->LBD16
    <---------ALFIN1   <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------ZAT14--------->ANAC58
   --------->MYB46(3)  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ZAT14--------->ANAC46
  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)            <---------ZAT18--------->ANAC58
 --------->ANAC46   ----------->HVH21       <xxxxxxxxxxxxxxxxsmallRNA(i)   ---------->DOF2
--->YAB1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(i)
---YAB1--------->AtMYB61 xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxsmallRNA(i)
xxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ARR14(2)  --------->At4g35610
xxsmallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
>smallRNA(i2)     xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ALFIN1
xxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->At4g35610
xxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR14(2)--------->DAG2
 
tcactcaccaccatcagcatcactcgaccggacactcgatcacatcttcacagtctactcaaatccgcactcaaccagaaaagctgagcacaagggaggg  15479300
                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                               <xxxxxxxxxxxxxxxxsmallRNA(i)
                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                        <xxxxxxxxxxxxxxxxsmallRNA(i)
                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                               ------->TEIL    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                               <xxxxxxxxxxxxxxxxsmallRNA(s)
                              xxxxxxxxxxxxxxxx>smallRNA(i)
                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                           <xxxxxxxxxxxxxxxxsmallRNA(i)
                          <---------ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                          ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                         ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       xx
                        --------->ZAT18<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xx
                       xxxxxxxxxxxxxxxx>smallRNA(i)                <---------ARR11(3)            xxx
                       <---------RAP2.6(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxx
                      xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxx
                      <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(i)              xxxxxx
                      xxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxx
                      --------->At4g35610  <------ZmHOX2a(2)------>NtERF2                    <xxxxxx
                      <---------At4g35610  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              xxxxxxxx
             xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxx
           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------MYB46(1)
           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------TOE2(3)
           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->MYB59
         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
         ---------->DOF2xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    xxxxxxxxxxx
       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxx
     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxx
     <----------ID1   --------->ATERF1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)                xxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------NtERF2xxxxx
    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)           xxxxxxxxxxxxxxxxxxx
  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(s)
 <------ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------MYB83
 
aagaggagaagacaaagtgtttggaagcggcctggacctccatcggatcacgaagcccatctcggcccattatctctctatgggccgagcgattaggtta  15479400
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AGI:  At1g41650.1   
Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05636.1)
Range:  from: 15478906    to: 15479442    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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