Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->MYB52(2)                                          <---------MYB52(1)                     <---------HSFB2a(2)  <--------P                                    <---------ANAC55(2)                     --------->HSFB2a(2)<---------MYB46(3)                              <---------TOE2(3)                  <----------DOF2   <---------HSFC1(2)                             --------->ATHB12             ---------->DOF2        --------->HSFC1(2)                            <---------YAB1-----           <xxxxxxxxxxxxxxxxsmallRNA(i) <------MYB46(1)                       xxxxxxxxxxxxxxxxxxxxxxx          <xxxxxxxxxxxxxxxxsmallRNA(s)  <------MYB83           <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->REM1(1)     --------->TOE2(3)                <---------ICU4 <---------ANAC46 --------      --------->ANAC46      --------->TOE1(3)     <---------LBD16       <-----------HVH21 --------->YAB1   cttcgcctacaccatcaaagctttgagaagccttaagaagcttggttagtttttcggagtcaaatatgactaaatgtcatgtgtatgattaagtataaga  15440200                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     ---------->DOF2                                                   <-------TEIL                                                  --------->CCA1(2)                            <-----     <---------ALFIN1                   ------>ZmHOX2a(1)                          --------->REM1(1)  <<<<<<<ZML2                           --------->LBD16    ---------->DOF2        <---------ZAT14 ---->ARR11(3)             --------->DAG2     <---------TOE2(3)          <---------ANAC58      <----- >smallRNA(si3)     ---------->DOF2 <---------ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ANAC46 ->YAB1       <--------P  ---------->DOF2    ---------->DOF2             <---------ANAC58 ---------->DOF2   actagaaccacatctggttgccaaaagctaaagtagagtttcctggttaaagatacaaagccaaagactcaaatggattgcgactacaccatcaaagctt  15440300                         <-----------HVH21                              ---------->DOF2                 <---------MYB46(3)                                   <---------HSFB2a(2)                 <------MYB83<---------ANAC46                --------->MYB52(1)             --------->HSFC1(2)                           --------->ANAC58                 <---------ANAC58        --------->YAB1--------->At4g35610                 --------->ANAC58             xxxxxxxxxxxxxx  --------->ANAC58    <---------At4g35610              --------->ARR14(2)             xxxxxxxxxxxxxxx  --------->ANAC58   --------->MYB52(2)                <<<<<<<ZML2    --------->HSFB2a(2)  <---------ANAC58 ----------AGL15 <------MYB46(1)         ----------->GT1  --------->ANAC46           <---------ZAT6 -----DOF2   <---------HSFC1(2)    <---------YAB1      <---------ARR14(2)       --------->YAB1   taagaagcaataagaagcttggttagatgtcatgtgtatgaatgagtataaaaactagaaccgcaacggtttctaaaagctatagtagtgtttccttgtt  15440400                                     ----------->RAV1(1)                 <xxxxxxxxxxxxxxxxsmallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(s)            --------->ANAC58    <-------TEILxxxxxxxxxxxxxxxx>smallRNA(i)       <---------HSFB2a(2)   --------->CCA1(2)                --------->REM1(1)  --------->ANAC58  <---------ARR14(2)           --------->ANAC58    --------->HSFB2a(2)  --------->ARR14(2)           --------->ANAC58 <----------DOF2                                    <- xxxxxxxx>smallRNA(si3)--------->ANAC58    ---------->DOF2                  <---------ZAT6   <------- xxxxxxx>smallRNA(si3) --------->ANAC58 --------->TOE2(3)     ---------->DOF2              <---------ICU4   agaagatacaaatccaaagactcatacggacttaagctacaacataaaagctttgagaagcaataaaaggccttgttagtgttttggagtcaaatatgac  15440500                                                                     <------------CBF                                            <---------ARR14(2)      --------->ATHB12                                            --------->ARR14(2)     <-------TEIL                                       --------->MYB52(1)    <-------TEIL                       <xxxx                                   --------->ANAC46          <---------ZAT14                 xxxxxxxx                                <---------ARR14(2)           --------->ZAT14                 <xxxxxxx                  <---------TOE2(3)--------->ANAC58      <---------------AtSPL8           ---------->DOF2                  <---------ANAC55(2)  -------->P        --------------->AtSPL3   <-------TEIL <xxxxx    --------->ATHB12--------->YAB1 --------->ANAC58      <---------------AtSPL3 <---------ARR11(3) --------YAB1--------->ATHB12   --------->ARR14(2)      ---------->DOF2       --------->ANAC46xxxxxxx --YAB1     <---------YAB1    ----------->ARR10   ---------->DOF2  <---------YAB1--------->CCA1(2)   tatgagtcatttgtatgattaagtataagaagtagaaccgcaaccggttcccaaaagttaaagtacagtttcattggtacaagatacatagccaaagact  15440600           *TSS   xxxxxxxxxxxxxxxx>smallRNA(i) --------->ANAC58 --------->ANAC58 xxxxxxxxxxxxsmallRNA(i)                                                  --------->GLK1(2) xxxxxxxx>smallRNA(s)                                                    <---------GLK1(2)          - xxxxxxxxxxxxxxxsmallRNA(fl3)             ----------->GT1          ------>ZmHOX2a(2)                = xxxxxxxxxxxsmallRNA(i)               <---------YAB1             --------->ARR11(3)                 = xxxxxxxxx>smallRNA(i)        --------->ANAC46 ---------->DOF2   <---------ARR11(3)             <----   catacggacttcggcagtgtttttgaaacaatactccattcttatggataaaagcatttcagacactgatctttggaatctgtcaatagggctgaattgg  15440700         <----------DOF2        ------>ZmHOX2a(2)       <---------RVE1(1)       <------ZmHOX2a(2)      --------->AGP1      <---------AGP1      --------->ARR14(2)      <---------ARR14(2)      --------->ARR11(3)              ---------->DOF2                                             ---      <---------ARR11(3)          <----------DOF2                          --------->ZAT18        ---     <---------CCA1(2)        --------->ZAT18                       <----------DOF2        <---------MYB46(3) -------->TGA1a          <---------TOE1(3)                        --------->At4g35610      --------->ALFIN1 ================================================bZIP_DOF       --------->YAB1            --------->ALFIN1 ===================bZIP_DOF --------->ALFIN1                --------->WOX13(1)      --------->DAG2 -------HVH21            <---------TOE2(3)                  --------->MYB46(3)      ---------->DOF2   tcacttcagatctttatcaccaagtttaagggtgtgctttcaaagctcccaagaattttgcaacaatcagctttgtctgccctacaaaaagggttgtggc  15440800                    ------>ZmHOX2a(2)                    =====================================HOX2a_HOX2a                   <------ZmHOX2a(2)                  <---------ARR14(2)                  --------->ARR14(2)                  <---------AGP1                                 --------->AtLEC2                  <-----------ARR10                             --------->LBD16                  --------->GLK1(2)                            <---------ANAC58                  --------->ARR11(3)            --------->LBD16<---------ANAC46           ---------->DOF2                     <---------LBD16 <---------ANAC58          <---------AHL20(2)     --------->ANAC46  <---------ARR14(2)--------->ANAC58        --------->CCA1(2)        --------->ANAC58  --------->ARR14(2)--------->ANAC46               -       <---------ARR11(3)        --------->ANAC58 <------ZmHOX2a(1)  --------->ANAC58           ----- ------>ANAC58    <---------ARR11(3) --------->LBD16     <---------DAG2--------->MYB46(3)      ------ ------>ANAC58   <------ZmHOX2a(1)  --------->RAP2.6(2)  <----------DOF2                    <--------   acgattcaagatttaaagaggatctaatacttcacaagccggacacaatccaggatgcgctttttccgtgcaaacaactggatggaagtagaagacgaaa  15440900                                               <---------ANAC58                                       <---------MYB52(1)                                       <---------ARR14(2)                                       --------->ARR14(2)                                      <-------GAMYB                                      --------->At5g28300                                     <---------MYB46(3)                                     ----------->GT1                                     <---------DEAR3(2)                                    <---------ANAC46                         --------->ANAC46      <---------ANAC58                         --------->ANAC58  <----------DOF2     <----------DOF2     --------->ANAC58 <---------ANAC58 --------->DOF2   <---------KAN4(2) <---------DEAR3(1)                       --------->TOE1(2)  ----- ---->DAG2     ----------->GT1    ------------>AtMYB77                       <---------LBD16    <---- ---->DOF2   --------->DAG2   <---------ARR14(2)  ------>NtERF2       <------ZmHOX2a(1)       <------ --ID1      ---------->DOF2--------->YAB1 <---------ANAC58        --------->TOE1(2)  ---------->DOF2   aggaaagctttgcaaaaaggaataaacaagcaaaactggcggttactttccctgccaagaagttcgagcctaggaaaaaccagggaccaaagaagttcag  15441000                                                                                          <-------TEIL                                    --------->ANAC58                                ----------->HVH21                                    --------->ANAC58                              ----------->GT1                         <---------DEAR3(1)                                       <---------ZAT6                        <---------------------WRI1                              --------->ZAT14                       <------NtERF2--------->ANAC46                            <---------ZAT14 ---->At4g35610       <---------HSFB2a(2)                                     <---------ZAT14 -----At4g35610       --------->HSFB2a(2) ----------->GT1                     --------->ZAT14      <- -----RAV1(2)--------->YAB1<------NtERF2---------->DOF2                   --------->GLK1(2)     -----   atgacaacccttcaacaataacgtcgggaggcgattccaaggaaaagaaaaatcgaacacttgggtccaagacgagagtctgtactgtgacatacataga  15441100  Previous    Next  AGI:  At1g40470.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 1.9e-102 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 15440611    to: 15443608    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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