Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------->KAN4(2)         <------ZmHOX2a(1)      <-----------RAV1(2)      <---------HSFB2a(2)      --------->HSFB2a(2)    --------->MYB52(1)    ------>MYB46(1)                                                                              ----    ------>MYB83              <---------At4g35610                                                ----    -------->P--------->KAN4(1)     <-----------GT1    <---------RAP2.6(2)                       ----   --------->MYB55(1)   --------->WOX13(1)            <---------At4g35610                        ----  <---------MYB111(1)--------->ANAC46            <---------ANAC58                              ------  <---------MYB59    --------->ANAC58            <---------ANAC58                         ------>ZmHOX2a(2)  --------->TOE1(2)  --------->ANAC58         <---------DEAR3(1)                         <------ZmHOX2a(2) ----------GT1<---------KAN4(1)<---------GLK1(2)<------NtERF2                           <---------ARR14(2) -->AHL20(2) <---------KAN4(2)<---------ZAT2 <---------MYB52(1)                         --------->ARR14(2)   ataacctaccaggagattattcgaagcaatccagcttcttactatccgttggcgagagcggctattaaggcctctaacatttcaaaaacagatcgccata  15436700                                                         <------ZmHOX2a(2)                                                        <---------ARR11(3)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                        --------->ARR11(3)                                                       <---------GLK1(1)                                                       --------->GLK1(1)                                                    --------->ATERF1(1)                                                    <------NtERF2                                                   --------->LBD16                                                  <---------DEAR3(1)                                                  <---------ANAC46                                                  <---------ANAC58                                                  <---------ANAC58                                                 <---------LBD16            --------->YAB1                     ----------->HVH21      ---------->DOF2                       <------ZmHOX2a(1) ----->ANAC58                               =====================HOX2a_HOX2a ----->ANAC46                               ====================HOX2a_HOX2a ----->ANAC55(2)       --------->MYB46(3)  <---------ZAT14  ------>ZmHOX2a(1)              --------->ARR11(3) ----->ANAC58 <---------YAB1        ---------->DOF2<---------MYB46(3)                      <---------ARR11(3) --->ICU4  <---------YAB1    <---------YAB1--------->ZAT18------>ZmHOX2a(2)            ---------->DOF2   agtaacccaaaagatgataatgggaacaactatcaatggaaagagaggactggcgggggatcctagagtcatcacatctcaacttagacaaaagaactct  15436800                                                                                         --------->DAG2                                                                                      ===============                                                                                =====================                  <-------GAMYB                                                 <------ZmHOX2a(1)                  <---------MYB52(1)                                          --------->ALFIN1                 <---------MYB46(3)                                          <------ZmHOX2a(1) <-----                --------->ATERF1(2)                                          ========================                <---------ATERF1(2)                                       <-----------RAV1(2)  ======              ------>NtERF2                          --------->ATHB12   -------->P    ===============             --------->DEAR3(1)                     <---------YAB1 --------->ANAC46==================             ----------->HVH21         <---------ANAC58            --------->ANAC58==================            --------->ATERF1(1)     <---------WOX13(1)             --------->ANAC58<------ZmHOX2a(1)           --------->At4g35610   <---------AHL20(2) ------>ZmHOX2a(1)   ------>MYB83  <------ZmHOX2a(1)           <---------At4g35610   <---------YAB1  <-----------------AGL1 ------>MYB46(1) ---------->DOF2         --------->ZAT18 ----------->RAV1(1)<<<<<<<<<TBF1        <---------ALFIN1--------->ALFIN1<---      --------->ICU4<---------MYB46(3) <---------ANAC58         <---------ZAT18 =====================   ctcttgtaatgagcgctgccggttgtgccacatttttaattgcttcttcttctccttattggacatcgcaccccaaccaggaggaggaggaaaaggagga  15436900                                                                                              <------ZmHOX2a(2)                                                                                             --------                                                                                             <-------                                                                                      <---------DAG2                                                                                    ------>NtERF2                                                                                   --------->DEAR3(1)                                                                                   <---------ALFIN1                                                                                  <------NtERF2------          ------>ZmHOX2a(2)                                                       --------->RAP2.3(1)    --------->At4g35610                                                           --------->ORA47(2)    <---------At4g35610                                                           --------->DEAR4(2) ===HOX2a_HOX2a                                                                   --------->ATERF1(1) ================HOX2a_HOX2a                                                    --------->PCF2------- -ZmHOX2a(1)                                                                    --------->ANAC46 ===HOX2a_HOX2a           <---------ARR11(3)                                    --------->RAP2.6(2) ================HOX2a_HOX2a                                                   --------->ATERF1(1) ================HOX2a_HOX2a                                                  <---------ATERF1(1) ===HOX2a_HOX2a           --------->ARR11(3)                      <----------DOF2------>NtERF2<------ ================HOX2a_HOX2a   --------->ANAC46                <---------ARR11(3)<---------ATERF1(1) ---ZmHOX2a(2)   --------->ZAT18                               --------->ARR11(3)<---------RAP2.3(1) ===HOX2a_HOX2a  --------->ETT(2)                             --------->GLK1(1)--------->RAP2.3(1)  -   tcaactagctgatcccttgtggaccgaatgtcttcgacacacagactagttggacctccatcggagacctttgaaatagaaggcgccaccttagggatct  15437000                                                                  <---------TGA1a                                                                  --------->O2                                                                  <---------O2                                                                  --------->TGA1a                                                              <-----------HVH21                                                        <---------ANAC58 ->ARR11(3)                                             <---------ANAC58        --------->ARR14(2) --ARR11(3)                                        <---------MYB52(1)           <---------ARR14(2) >ZmHOX2a(2)             ----------->RAV1(1)     <---------ZAT6<---------REM1(2)--------->GLK1(2) -->GLK1(1)             --------->MYB46(3)       <---------------AGL15         --------->GLK1(1)    - ---GLK1(1)      <---------ZAT2                <---------At5g28300--------->ANAC46     <------------- --------->DOF2  --------->ZAT2        >>>>>>>>>TBF1  <---------ANAC46         <---------GLK1(1)   <-   cagaaagagggctaagaccagcttgaacaacagtaagagaagaagaagttactgttatgggtgccttcacgtctgatttgggaatccatttctgtttagg  15437100                                        --------->At4g35610                                     ----------->RAV1(2)                                  ================================HOX2a_HOX2a                                  ==========================HOX2a_HOX2a                                  <-------TEIL                    <---------At4g35610                                  ------>ZmHOX2a(2)               <---------ZAT2                                 =================================HOX2a_HOX2a                                 ===========================HOX2a_HOX2a                                 <------ZmHOX2a(2)         ========================HOX2a_HOX2a                           <---------ANAC46                <------ZmHOX2a(1)   <----------DOF2               --------->LBD16  <---------ARR14(2)   <------ZmHOX2a(1)    --------->ARR11(3) --------->At4g35610   <---------At4g35610   <---------ANAC58    --------->ANAC58 <---------At4g35610   --------->At4g35610   <---------ANAC58 <------NtERF2 ------>ZmHOX2a(2) -------->DEAR3(1) --------->MYB52(1)<---------At4g35610<-----------RAV1(2) ========================= ----AGL1     --------->LBD16   --------->ARR14(2)   ==============================HOX2a_HOX2a    --- -----NtERF2 <---------LBD16 <---------TOE1(2)  --------->ATHB12 --------->ANAC58          <---------PCF5   caccgctgataacatcccggataacagctccttggatccatctgatgacttgataggaccaggaggcaagctgtttgatctcttttttgaacgggacctc  15437200                                                                                     <---------------AGL15                           --------->YAB1                                            --------------->AGL15                    <------------CBF                                          <----------DOF2    ----            <---------ARR11(3)                                        --------->TOE2(3)         <---- <----------DOF2 --------->AHL20(2)                                  --------->MYB46(3)   ---------->DOF2 ====HOX2a_HOX2a <---------AHL20(2)           --------->YAB1   --------->ANAC58     <---------ANAC58 --->ZmHOX2a(1)<-----------TBP         --------->ARR11(3)      --------->ANAC58     <---------ANAC58   cttcttttgaacttgatatttatattgaatcatacatataacatctagtcatatttcactctgaaacgctaaccaaaattctttttgcttcttaaagtat  15437300                                                                                       --------->TOE2(3)                               --------->ZAT6                                          --------->TOE1(3)                          --------->TOE2(3)                                      <---------MYB59                          --------->TOE1(3)                               --------->TOE1(3)   -------   <---------AHL20(1)     <---------MYB59                                 --------->TOE2(3)   ------- ----->YAB1             ------->TEIL      ---------->DOF2      <-----------GT1   --------->TOE2(3) -----YAB1          --------->ANAC46--------->ANAC46          <-----------GT1    --------->TOE1(3)   tatagtatatttgctctaaaacactgaacctaaactctactccataaatcccaaaaactaaaatttaacccctaaaccctaaacctaaaccctaaaccct  15437400                                                                                       ------>ZmHOX2a(1)                                                                               --------->TOE1(3)                      --------->TOE1(3)                                        --------->TOE2(3)        --------->TOE2(3)     --------->TOE1(3)   --------->TOE2(3)    --------->TOE1(3)            -        --------->TOE1(3)     --------->TOE2(3)   --------->TOE1(3)    --------->TOE2(3)       <----- -->TOE1(3)           --------->TOE2(3)     --------->ANAC46           <----------DOF2--------->TOE1(2) -->TOE2(3)          --------->ZAT6       --------->ZAT6 --------->TOE2(3)     <---------MYB59 <-----   aaatccaaaaccttaaactcttaaccctaaacccttaaaactaaacactaaaccctaaaccatagaccccaaactttaaaacctaaatcctactatagct  15437500                                                                                           <---------WOX13(1)                                                                                  <---------HSFC1(2)            <------MYB46(1)                                                       --------->HSFC1(2)            <---------ANAC58                                                     ------>MYB46(1)            <---------ANAC58                                                     ------>MYB83            <------MYB83                                                      --------->MYB46(3)    <         <---------MYB52(1)                                              <---------At4g35610        -         <--------P                                                      --------->LBD16  <---------ANAC58        <-------GAMYB                                                --------->ARR14(2)   <---------ANAC58      --------->MYB59                                                <---------ARR14(2)  --------->ATHB12    --------->GLK1(2)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <- -------->LBD16                                         --------->ICU4   --------->At4g35610       <- ----ANAC58<------MYB83              --------->CCA1(2)--------->YAB1<---------GLK1(1)   <---------YAB1 ----ANAC58<------MYB46(1) <-----------GT1---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --   tccgaaattcggttgggtttctattttttatactaaatgatatacaaagcatttagtcatatttgactacaaatccgctaaccaagcttcttgattgtca  15437600  Previous    Next  AGI:  At1g40390.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43760.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); contains InterPro domain Endonuclease/exonuclease/phosphatase (InterPro:IPR005135) Range:  from: 15435017    to: 15437115    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version