Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                  ----------->GT1                                     --------->WOX13(1)                               ---------->DOF2                                       <---------ICU4                 <---------ARR11(3)                                                  --------->YAB1                 <---------ARR14(2)            <-------TEIL   <xxxxxxxxxxxxxxxxsmallRNA(s)    ------>MYB83    <---------YAB1 ------>ZmHOX2a(2)       <---------TOE2(3)  <---------AtMYB61      -------->ATHB1 <---------YAB1  --------->ARR11(3)        --------->MYB59  <---------MYB46(3)      <---------ATHB12 ------ANAC58    --------->ARR14(2)  --------->AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------>MYB46(1) ------ANAC58   <---------CCA1(2)----------->GT1      ----------->RAV1(2)         --------->WOX13(1)   cgtatgatttttggttttggatcttctaacatggaaagataaatttaggttcatacccctggttgtggttttagccctaaaactcaatcattcacctatc  15294300                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                          --------->TOE2(3)      <---------CCA1(1)                    --------------->AGL15            --------->TOE2(3)    xxxx      <---------RVE1(1)                    <----------DOF2                  --------->TOE1(3)    ----     --------->ARR11(3)               <---------ANAC58                --------->ANAC46    --------->TOE1(3)     <---------ARR11(3)               <---------ANAC58              --------->ZAT6 --------->TOE2(3) ---->YAB1<---------AHL20(2)        <---------YAB1              ------>ZmHOX2a(1)  --------->TOE1(3) ----ATHB12                     <---------GLK1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)-----   atcttgagatatttgattccaaaacgattacaaagattgtgcttacttttgaaagtatatttgctcctcaacactaaacctaaaaccttaaaccctaaac  15294400         --------->ANAC46       <---------ALFIN1                                                                 <---------MYB59       --------->REM1(1)                                                                --------->TOE1(3)     ------>ZmHOX2a(1)                                                    --------->ANAC46 xxxxxxxxxxxxx>smallRNA(fl3)           --------->TOE1(3)            <----------DOF2     --------->TOE2(3) xxxxxxxxxxxxxx>smallRNA(fl3)          <---------MYB59     --------->TOE2(3)     --------->TOE2(3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->TOE2(3)   --------->TOE1(3)     --------->TOE1(3) ----->TOE2(3)                 --------->TOE1(3)    --------->TOE2(3)    --------->TOE1(3) ---->YAB1                     --------->TOE2(3)    --------->TOE1(3)    --------->TOE2(3)   ataaatcctacaccctaaactaaaaatccaaaaccctaaaacctaaacccaaaaccctaaaccctaaactctttaccctaaacccttaaacctaaaccca  15294500                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                        <---------ANAC58                                                        <---------ANAC46                                                        <---------ANAC58                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                     <--------P                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                    <-------GAMYB                                           <---------HSFB2a(2)                                           <---------HSFC1(1)                                           --------->HSFB2a(2)   <---------ARR11(3)                                  <---------DAG2    <---------MYB52(1)                                  <----------DOF2  <---------MYB46(3)                 ---------->DOF2                           <---------ARR11(3)      <---------DEAR3(2)                --------->ANAC46                       --------->TOE2(3)   --------->HSFC1(1) >>>>>>>ZML2  <---------WRKY38(1)               <----------DOF2 ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s) --------->ANAC46  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->CCA1(2)  - --------->TOE2(3)  <-----------GT1   <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    ---   aaaccatagtccccaaactttataaccaaaatcctactttagcttctggaagccggttgcggttctagttcttatgctcaacgatacacaaagcatctag  15294600                                                                 --------->YAB1                                                                 ----------->GT1          --------->AtLEC2                --------->ZAT14                        --------->ANAC55(1)                --------->ANAC58                <---------ZAT14                        --------->ANAC46             --------->ZAT18           <-------TEIL                                <---------ANAC55(2)       ----------->RAV1(2)          <-----------HVH21                            --------->ANAC55(2)       --------->At4g35610         <-------GAMYB <----------DOF2                 --------->ANAC58     <-----------GT1        <---------DEAR3(2)                             ----------->GT1 <---------AHL20(1) ------>MYB46(1)        <---------MYB46(3)                             --------->ANAC58--------->AHL20(2) --------->ANAC46       <---------DEAR3(1)                             <-------TEIL     <---------AHL20(2) ------>MYB83       <---------RAP2.6(2)                        <---------------AtSPL3   --------->AHL20(2)       <---------DREB2C(2)                        <---------------AtSPL8   <---------AHL20(2) -------->ICU4  <---------ZAT18           --------->YAB1<---------MYB59--------->AHL20(1) --------->ANAC58 ------>YAB1    --------->ZAT18 --------->AHL20(2)<---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tcatatttggcggttcagagcactactttgccgataatatacaaacaaaatcaaggtacgtaactaatagtaattaattaaacatctgcaccaagcaagt  15294700                                                                                                    <                                      <-----------RAV1(2)                                          <-                                     <------ZmHOX2a(2)                                             --                              <----------DOF2                                                      --                           --------------->AGL15                                                   <-                           <---------------AGL15                            --------->ARR11(3)     --                          <-----------------AGL1                       ------>ZmHOX2a(1)           <-                          <-----------------AGL2                   --------->ARR11(3)           -----           --------->YAB1 <-----------------AG                     <---------ARR14(2)           -----      --------->LBD16   <-----------GT1 ----------->GT1 <---------ATHB12   <---------CCA1(2)  <------     --------->ANAC46 *TSS<-----------------AGL3    <-------TEIL   --------->ARR14(2)         <------   tttctatgcgcaaaaataaccatgaattacctcttttggatcaggttaacaagattcaatgagggtgaagttcctgtatatcatgttcttggagtaccta  15294800              <------MYB83              <---------MYB46(3)              <------MYB46(1) ---------AHL20(2)                                                                             ------ --------ARR11(3)                                                               <---------GLK1(1)   < ------->ARR11(3)                                                          <-------MYC3  --------->ANAC46 ------->AHL20(1)                                                          ------->MYC2  --------->ANAC55(2) --------AHL20(2)                                                      --------->ZAT18   <---------ANAC55(2) ------->AHL20(2)                                               <---------YAB1 <---------ARR14(2)   - --------AHL20(1)         ----------->GT1                   <---------GLK1(2)  --------->ARR14(2)<--- ->MYB46(1) <---------MYB52(1)                          <------ZmHOX2a(1)  <-------MYC2  --------->ANAC58 ->MYB83   <-------GAMYB --------->ALFIN1            --------->At4g35610   ------->MYC3  --------->ANAC55(1) ---MYB59 <-----------RAV1(1)                      --------->YAB1      <---------ZAT18   --------->ANAC58 ---MYB111(1)<---------AtMYB61    <-------TEIL   <-----------HVH21   <---------ZAT18    <---------LBD16   atatatttagttctgttggtcgtccaagtggagaaatacatgaagtatggctatcagaggaagattatcaatgcgcacatggatatgttatacggaattg  15294900                                                            <---------YAB1         --------->ANAC55(2)                              --------->YAB1        <---------TOE2(3)                                 --------->AHL20(2)        <---------TOE1(3)                                <---------YAB1       <-----------RAV1(2)                            <---------AHL20(2) ----->GT1                                  <---------------AGL15 ---------YAB1                              --------------->AGL15                                  <- -------->ICU4                 ---------->DOF2     <---------TOE2(3)                  <-----------RAV1(1) ------YAB1         ----------->GT1        ----------------->AGL3            -------->P          ----   tgattattttcaggtaattgagaggtatataacaaaagtcatactcccattttaagttaattataaatgtttgtttactaacccttatatgttgtttttg  15295000                                                --------->ANAC58                               <---------AHL20(2)                              --------->AHL20(2)--------->ANAC58                       <----------DOF2         XXXXXXXXXXXXXXXXXXXX>MIR319A/B                 <---------ARR14(3)            XXXXXXXXXXXXXXXXXXXX>MIR319C                     xxxxx                 <---------GLK1(2)--------->CCA1(1)      <---------GLK1(1)                     ------                 --------->ARR11(3)      <------ZmHOX2a(1)               --------->CCA1(2)  <--------                 <---------ARR14(2)    --------->LBD16   --------->GLK1(1)                 --------->ALFIN1                 --------->ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <-----------RAV1(1)    --------->YAB1  <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ARR11(3)   <---------YAB1--------->ARR14(3)   <---------LBD16   <---------ARR11(3)     <------ZmHOX2a(1)xxxxx ---------DOF2   <---------ARR11(3)--------->ARR11(3)   --------->ARR11(3) --------->ICU4--------->ALFIN1 ------>ID1    ----------->ARR10  --------->RVE1(1) ---------->DOF2 ---------->DOF2<---------ARR11(3)   tctttataatatgttcgaagattttctttctattaaatatccaggattgaacgaaaaagaactccttgtgaaaagaaatgaggaatatcatgtgtgggtg  15295100        ------->TEIL     <---------ANAC55(2)     <---------YAB1            --------->ATHB12                      <---------YAB1               <-- --------->ARR11(3)           <---------YAB1         <---------YAB1--------->YAB1                 --- <---------GLK1(2)      <<<<<<<<<GATA-1           <---------YAB1  <---------ATHB12           -------- xxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------AHL20(2)   --------->ICU4            <-------- ----->HVH21           <-----------GT1      <---------AHL20(2)   <---------TOE2(3)          <-------- -MYB46(3)        ----------->GT1        --------->AHL20(2)     --------->YAB1            ---------->DOF2 xxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2) --------->ZAT6             <---------AtLEC2   aaagattatgtatgtctaaatagtttatctatatgatttgcatttatttattgttattgttatctctaatgatgtttatttctaaatttgcataaaggtt  15295200  Previous    Next  AGI:  At1g40135.1    Description:  transposable element gene. CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-40 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) Range:  from: 15294722    to: 15298447    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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