Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            ---------                                                                                           xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                            ------>MYB46(1)<xxxxxxxxx                                                                            ------>MYB83<xxxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                          <---------ALFIN1-----------                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          --------->AtMYB61--------->At4g35610                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         --------->MYB46(3)xxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)     <                                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------ANAC46                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <---------ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------ANAC58                     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <-----------RAV1(1)                       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxx                      --------->ANAC55(2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<                      xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(i)<---------At4g35610                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)-                      ----------->RAV1(2)                      <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxx                  <-----------HVH21                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <--                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xx                 ------>ZmHOX2a(1)                       xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxx              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------->GAMYB            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxx      <---------ZAT14xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxx  <---------MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxx  xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------MYB52(1)<xxxxxxxxxxxxxxxxsmallRNA(i)<x -----------RAV1(1)----------->HVH21          <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxx -----ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx -->ZAT6   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---GT1<-----------GT1<---------At4g35610  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT2xxxxxxx   tactgttgtttactgcatcctgtcacctgttgcttagtttctgcaattctttactgttactcgacctgatactcgaccacccagttgtctggcaacagac  15182900           <---------YAB1          --------->GLK1(2)          <-----------ARR10          <---------ARR11(3)          --------->ARR11(3)          --------->ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(i) >MYB46(3)<---------ARR14(2) xxxxxx>smallRNA(s) xxxxxxsmallRNA(s) xxxxxxsmallRNA(i) xxxxxxxxxxxsmallRNA(le3) xxxxx>smallRNA(s) xxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(si3) xxxx>smallRNA(i) xxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(i2) xxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(fl3) xxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(si3) xxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(si3)                               ----------->HVH21                 <---------ANAC46 >RAV1(1)<---------CCA1(2)                         xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxx xxxxxx>smallRNA(i)                                <xxxxxxxxxxxxxxxxsmallRNA(i)      <------MYB83 ---------ZAT14                                 <xxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------MYB46(3) xxxxxxxxxxsmallRNA(s)                          xxxxxxxxxxxxxxxxxx>smallRNA(si3)     <------MYB46(1) ---------ZAT18                              <-----------HVH21--------->LBD16       <---------AtMYB61 -------->ZAT14                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------MYB52(1) xxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-------GAMYB -------ZAT14                           xxxxxxxxxxxxxxxx>smallRNA(s)             <---------ANAC58 xxxxxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxsmallRNA(i)             <---------ANAC46 xsmallRNA(i)<----------DOF2          xxxxxxxxxxxxxxxx>smallRNA(s)               <---------ANAC58 xxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxx>smallRNA(i)            --------->At4g35610 xxxxxxxxxxx>smallRNA(s)            xxxxxxxxxxxxxxxx>smallRNA(i)             <---------ZAT2       <-- xxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------At4g35610 <--- xxxxxxxxxxxxxxxsmallRNA(i)       <---------MYB52(1)   --------->AtMYB61     --------->ZAT2    <----- xxxxxxxxxxxxx>smallRNA(s)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ----------->ARR10>>>>>>>>>TAC1 xxxxxxx>smallRNA(se3)          <---------ZAT6<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-------TEIL <xxxxxxx xxxxxxxxx>smallRNA(i)     <----------DOF2xxxxxxxxxxxxxxxx>smallRNA(s)  ---------->DOF2 xxxxxxxxxxxxx   tgtgcagtcgagtatctttgtttcattttctttactgttactcgacctgtcactcgacctcacccagggctctgcaaagagctgcgttggtcgagtgttt  15183000                                                                                     xxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                               <---------WRKY18(1)                                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                      <---------TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      <---------TOE2(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(i)--------->AtMYB61xxxxxxxxxxxxxxxx>smallRNA(i)                           <---------ANAC46             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------ANAC58           <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxx xxxxxx>smallRNA(le3)      <---------ANAC58          <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxx -------At5g28300      <---------ANAC58 <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------GT1           <---------ANAC58<---------YAB1--------->ANAC58  <---------AtLEC2             - -----DOF2     <-----------GT1  <---------ZAT18      --------->ANAC46  <---------ANAC58          <xxx xxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxx xxxxxxxxx>smallRNA(se3) ------>ZmHOX2a(1)           --------->ANAC58 --------->ATHB12  xxxxxxxxxxxxx   tactgtttctgtttgattttctgtttcctgcttgttcacttaggattgctataacacaccaaaacctgttattgcttggcttgacttagtgacttctgat  15183100                                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               <------MYB46(1)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <------MYB83                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <---------ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------WOX13(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               --------->ATHB12        <---------MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ICU4       <---------WOX13(1)      <---------WOX13(1)         xxxxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->TOE1(3)  <---------YAB1      <---------WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------MYB59 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ATHB12 >smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <x xxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <--- xsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxx xxx>smallRNA(fl3)   --------->ANAC58  --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---- xxxxsmallRNA(si3)   --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------YAB1       <xxxx -------->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <xxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1        ------ xxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <------ZmHOX2a(1)     <xxxxx xxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxxxxxxxsmallRNA(i)------->GAMYB    <---------TOE2(3)     xxxxxxxx   cacatcttgattgttagcatcacacccatttggattgacaacctaaaatactacaacgacatgattggtgttttaggataattgactgaaaaacctatta  15183200                     <---------ANAC46                     <---------ANAC58                 --------->ARR14(2)                 <---------ARR14(2)          <-------GAMYB        --------->ATERF1(1)        --------->RAP2.3(1)        <------NtERF2<---------ANAC58       ------>NtERF2<---------MYB46(3)       <---------RAP2.3(1)      <---------DEAR3(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <----------DOF2 xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <---------ARR11(3) ------YAB1--------->ATERF1(1)                xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------GLK1(1)     --------->ARR11(3)        <------- -------GT1<---------MYB52(1)                --------->GLK1(1)<------ZmHOX2a(2)              <------- xxxxxxxxxxxxxxxxxxsmallRNA(s2)              xxxxxxxxxxxxxxxx>smallRNA(i)                    <------- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------TOE2(3)  --------->ARR11(3)              -------- --->YAB1--------->DEAR3(1)    --------->MYB52(2)       <---------ANAC58           <----------DOF2  < xxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------GT1       <---------ANAC46        <-----------GT1 <---- xxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB46(3)       <---------ANAC58  ------------>CBF<---------MYB52(1)   tcaatttggcgccgttgccgattgggtgtttgtttgttacatttgagatttcagacttgcttagatcaagttctttttcaattttcttttcagttactta  15183300                                                                          --------->HSFB2a(1)                                                                          <---------HSFB2a(1)                                                                          <---------HSFC1(2)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                        <---------GLK1(2)          --                                                                     --------->YAB1                --                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <---------ALFIN1                  -------->P             <xxxxxxxxxx                                 --------->REM1(1)             --------->ANAC58        ------->GAMYB-                                <-------TEIL                   --------->ANAC46       --------->ANAC46                              xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ANAC58<----------DOF2    ---                            --------->LBD16                   ------->GAMYB  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --ANAC55(2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---- --ANAC58<---------ANAC58  <-----------RAV1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ------ --ANAC58<---------ANAC58 ------>ZmHOX2a(2)      *TSS<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)----------- ->ANAC55(2) ---------->ID1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------ZmHOX2a(2)--------->HSFC1(2) -------- -----At5g28300 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3)   ctgtgtgtttttcttgttgtcttcttgatccaggtacacctctactgtatgcgaactcgatcaacaggcaaccagaacctccttttcaacgacaacatca  15183400                                                         <---------ALFIN1    --------->DEAR3(1)                                   --------->AtMYB61   <--------------OsCBT                             --------->At4g35610  ---------->DOF2                              <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ALFIN1                             ------->TEIL     <---------MYB52(1) ----->GAMYB                         <---------WRKY38(1)--------->MYB46(3) ------->RAP2.6(2)                   <---------WRKY12--------->MYB46(3) xxxxxxxxxxxxsmallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -------->ZAT18       <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------MYB55(2) ------>MYB46(3)     ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       ---- ---->P  <------NtERF2--------->DAG2--------->WRKY18(1)-------->P                                ---- --->MYB46(3)   --------->YAB1     <-----------HVH21<---------At4g35610                          ---- >RAV1(1)--------->LBD16       ----------->RAV1(1) --------->ANAC46                  --------->At4g35610 ->TOE2(3)--------->ANAC46    --------->MYB46(3)--------->TOE2(3)                --------->GLK1(2)   accgcacagcccgcgaaatcagaaaaaggagaaccacagtcaaccctgtacctcagcaaccactcgttatggctgaagaacagaatcagcaaaatggcca  15183500                              <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          ------->MYC2                          ------->PIF5                          <-------PIF5                          ------->MYC3                          <-------MYC3                          <-------MYC2                         --------->bZIP60(2)                         --------->TGA1a                         <---------TGA1a                         --------->O2                         --------->ANAC46                         --------->ANAC55(2)                         <---------ANAC55(2)                         <---------O2                        <xxxxxxxxxxxxxxxxsmallRNA(s)                       <---------ALFIN1                     ------->TEIL --------->DEAR3(1)                   <-------TEIL <---------At5g28300                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------HSFB2a(2)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->LBD16                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------HSFB2a(2)                <---------At4g35610<-----------TGA1      <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <------ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------At4g35610  ------>ZmHOX2a(1)     --------->HSFB2a(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->At4g35610----------->RAV1(2)  xxxxxxxxxxxxxxxxxxxxxx ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ALFIN1 <-----------GT1 ----->AtLEC2   --------->At4g35610<-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ----->ANAC58  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ------->TEIL --------->HSFB2a(2)   <---------YAB1 ----->ANAC58  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ALFIN1    --------->YAB1<xxxxxxxxxxxxx   tgccaacattggtgctggagatgcaccacgtgatcaccgtcagaggaagggaatcgcacctcctgctatccagaataacaacttcgagattaagagtggt  15183600                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                   --------->ANAC46                                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                 <---------ALFIN1                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <------ZmHOX2a(2)                                              --------->ARR11(3)                                              <---------ARR14(2)                                              <-----------ARR10                                 -----                                              --------->ARR14(2)                                <----                                              <---------ARR11(3)                         ------>MYB46(1)                                             <------ZmHOX2a(1)                           ------>MYB83                                        <---------ATHB12                                 --------->MYB52(1)                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->MYB55(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AtMYB61              xxxxxxxxxxxxx                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ALFIN1              <---------MYB52(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->MYB46(3)             <---------MYB111(1)              --------->LBD16         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxx             <---------LBD16    <---------ANAC58<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->AtMYB61            <-----------RAV1(2) <---------ANAC58------>ZmHOX2a(2)                      <---------MYB46(2)       <---------YAB1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <---------MYB59 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(s) >smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  xxxxxxxx xxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ctcatctcgatgattcaggggaacaaattccatggtttgccaatggaggatccactcgaccaccttgatgaattcgataggctctgcaacctaacgaaga  15183700           <---------ZAT14           --------->ZAT14           --------->REM1(2)       ---------->ID1                              --------->At4g35610         xxxxxxxxxxxxxxxx>smallRNA(i)                                         <-----------ARR10         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   <---------ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->ARR11(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->ARR14(2)  <xxxxxxxxxxxxxxx     <-----------HVH21           <---------MYB46(3)     ---------->DOF2       --------->GLK1(2)  <---    <---------bZIP60(1)          --------->MYB52(2) ----------->HVH21         --------->ARR14(2) ---- ---->ARR11(3)                 <---------MYB52(1) <---------ANAC58            <---------ARR14(2) ---- -----ARR11(3)     <---------ARR14(2)             <---------ANAC58  <---------HSFB2a(2)         <---- ---ZmHOX2a(2)     --------->ARR14(2)            <---------MYB46(3)<---------LBD16   xxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(i2) --------->ZAT2          xxxxxxxxxxxxxxxx>smallRNA(i)<---------GLK1(2)------- xxxxxxxxx>smallRNA(fl3) <---------ZAT2       <---------ANAC58  <---------CCA1(2)    <xxxxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC46 <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   tcaatggtgtcagtgaagacggattcaagctccgtttgttcccattttccttgggtgacaaagcacatatctgggagaagaatctgccccatgactcaat  15183800  Previous    Next  AGI:  At1g40117.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.8e-281 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 15183349    to: 15188958    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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