Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ARR14(2)                                 <---------ANAC58                       <---------ARR14(2)                                                         <--                       --------->ARR14(2)                                                        <---                     --------->LBD16--------->ARR14(2)                                           ----                    <---------HSFB2a(2)                                                        <-----          <----------DOF2        <---------ANAC58                                              ------          <---------DAG2         <---------ANAC46              ---------->DOF2                <------       ------>ZmHOX2a(1)        <---------LBD16           --------->CCA1(2)                   ------- ------->TOE2(3)    --------->ANAC55(2)   <---------ARR11(3)  --------->ANAC46            <---------ARR14(2) ------ARR11(3)     --------->HSFB2a(2)>>>>>>>ZML2      --------->YAB1                    --------->ARR14(2) ----->ARR11(3)    <---------LBD16 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ICU4   ------- -DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ATHB12    --------->YAB1<---------GLK1(1)   atctaaatcctactttaggcttccggaatcgagttgcggttctagttcttatgctcaatgatacacaaagcatctagtcatatttgacaacaaatccgct  15424200   <---------HSFC1(2)   --------->HSFC1(2)   --------->HSFB2a(1)   <---------HSFB2a(1) -------TOE2(3) ------DOF5.7(2) ----->MYB52(1)                                                                     --------->ANAC58 ----MYB52(2)                                                                       --------->ANAC58 --->DOF5.7(2)                      --------->ANAC58                            --------->ANAC58 ---At4g35610         <---------TOE2(3)                                         --------->ANAC46 -->At4g35610       ---------->DOF2 --------->ANAC58                            --------->ANAC58 ---- -->LBD16  <----------DOF2       <---------REM1(1)<---------YAB1       ----------->GT1      <--------   aacgaagtttcttctttattctcaaaggtttgatggtgaagccaaaattcttatgagttttcagtgttttgaatcgtttaacaaggaagcactactttca  15424300                           --------------->AGL15                           <---------------AGL15                               --------->REM1(1)                    <---------YAB1                                             --------->ANAC46              ------>MYB83<---------ANAC58                                    --------->ZAT14    ----              ------>MYB46(1)                                                <xxxxxxxxxxxxxxxxxxsmallRNA(le3)             ----------->RAV1(1)                                             <xxxxxxxxxxxxxxxxxxsmallRNA(si3) ----->ZAT6 ------->GAMYB <---------ANAC58   <---------AHL20(1)     --------->TOE2(3)---------->DOF2 --DOF2    --------->MYB46(3)   ---------->DOF2         ------>ZmHOX2a(1) --------->ZAT6         ----   ctctaaaacgataaccaacattcttcttgcttcttaaagttttatagtatatttgctcctaaactctaaaacttaaactctacaccataaatcccaaaac  15424400                                                      ------>ZmHOX2a(1)                                                     --------->TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               --------->TOE1(3)  <---------ARR14(2)     --------->TOE2(3)       -------->P              --------->TOE2(3)  --------->ARR14(2)     --------->TOE1(3)          -  <---------ARR11(3)    --------->TOE2(3)        ------>MYB83            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ARR11(3)    ------->GAMYB            ------>MYB46(1)  --------->TOE1(3)    --------->TOE2(3)  <-----------ARR10     --------->TOE1(3)      <---------MYB59    --------->TOE2(3)    --------->TOE1(3) ----->TOE2(3)       <---------ALFIN1 --------->TOE1(3)    --------->TOE1(3)    --------->TOE2(3)   < ----->TOE1(3)    --------->ANAC46    --------->TOE2(3)    --------->TOE2(3)    --------->TOE1(3) <xx   ctaaaatctaacccctaaaccctcaaccctaaaccctaaaccttaaataccaaatcctaaaccctaaaccctaaaccataaaccctaaaccctaaactct  15424500                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        --------->YAB1                                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <---------MYB59                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->TOE2(3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->TOE1(3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <-------         --------->TOE2(3)                        <xxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1 --------->TOE2(3)      <---------YAB1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxx --------->TOE1(3)    --------->YAB1       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ANAC58            <---------DAG2       <xxxxxxxxxxxx -------->ZAT6  --------->TOE1(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------CCA1(2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AtLEC2            <----------DOF2<---------YAB1 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   taaccctaaacccttaaacctaaatgataagtgtgtattttgcatgttttgagcatccatttgtcatcactttagcatcatatcatcactgttttatacc  15424600                                                <-----------RAV1(1)                                          <---------AtLEC2                                       ------>ZmHOX2a(2)                                      --------->CCA1(2)                                      <------ZmHOX2a(2)                                     --------->ARR11(3)                                     <---------AGP1                                     <---------ARR11(3)                                     --------->AGP1                                     <---------ARR14(2)                               --------->At4g35610                                <------ZmHOX2a(1)                                    <---------MYB46(3)      <---------ICU4            ==============HOX2a_HOX2a                           xxxxxxxxxxxxxxxxx      --------->ATHB12        <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx     <---------YAB1    <-----------------AG   <---------AtLEC2                     <---------At4g35610   --------->YAB1  <---------DAG2    --------->ARR14(2)                            --------->At4g35610 ----GT1           <----------DOF2 ----------->ARR10                               xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(fl3)    <---------TOE1(3)------->TEIL             --------->ANAC55(2)         < xxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ARR14(2) --------->ATHB12         - xxxxxxxxxxxsmallRNA(si3)   *TSS=============HOX2a_HOX2a<---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   atttctcatcatttgtcatcactttacatgtttaggatagatctgcatgcatgttgcatatttgtgttgatttcaagtgatttggagctgttgacgagct  15424700                                                                         <---------ALFIN1                                                                        --------->MYB46(3)                                                                    --------->AtMYB61                                                                   <---------At4g35610                                                                   --------->At4g35610                                                                   --------->ANAC46                 <---------ICU4       --------->LBD16          <-----------HVH21           ----------->RAV1(2)  <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->bZIP60(2)          -------->P           ----------->HVH21              --------->ANAC46           xxxxxxxxxxxx xxxxx>smallRNA(fl3)         --------->ANAC46               <---------ALFIN1       --------->ANAC46 xxxxx>smallRNA(se3)       --------->AtMYB61               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   --- xxxxx>smallRNA(fl3)      --------->MYB46(3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        === ---------HSFB2a(2) <-----------HVH21--------->LBD16   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <------ -------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------   atctggaagagcaacctgatcatgtcaaaccactcgaccccgaggtcgagtagaagacatcaccacttcacctcaccactcgtccacgaggtcgagtgtc  15424800                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                    ----------->HVH21                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                <xxxxxxxxxxxxxxxxsmallRNA(i)                               --------->ZAT14                          <------ZmHOX2a(2)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            ----------->HVH21  xxxxxxxxxxxxxxxx>smallRNA(i)          <---------ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ----------->RAV1(2)--------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->LBD16                                 <---------ALFIN1        <---------ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                --------->AtMYB61      <-----------HVH21  <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->MYB46(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->LBD16                     <---------ALFIN1 --------->At4g35610<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       --------->MYB46(3)    <- xxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <---------MYB55(2)       <- --->ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       --------->MYB46(3)       <- ================================HOX2a_HOX2a   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->AtMYB61     ---- ---ZAT18 --------->At4g35610--------->bZIP60(1)                     <---------YAB1     <-----------GT1 -->ZAT18 --------->ANAC55(2)<---------bZIP60(1) xxxxxxxxxxxxxxxx>smallRNA(fl3)       ------>ZmHOX2a(2)   ctcatctccatcacctgaccatcactcgatcacatcactcgaccccgaggtcgagtgtcttcacctccattatcaaaccaccactcgatctcaccactct  15424900                                                                                     <xxxxxxxxxxxxxxx                                                                                   --------->ANAC46                                                                                -------->P                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            --------->ANAC58                                                                            --------->ANAC46                                     <---------SPL7                         --------->ANAC58                                     --------->ZAT14                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <---------ZAT18                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <---------ANAC58                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <---------ANAC58                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ANAC46                              <---------ALFIN1                          <---------ALFIN1                               --------->ZAT14                          --------->AtMYB61                              <---------ZAT18                         --------->MYB46(3)                              --------->ZAT18                       <---------ALFIN1                                  --------->LBD16                       --------->ANAC46                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                       --------->AtMYB61                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      --------->MYB46(3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->AtMYB61  <---------ANAC46                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------------------->WRI1          <--- --------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ---- --------ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->NtERF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<   gccttgaagtcgagtatcaccatcaccaccactcgactgcgtactcgatgaaaagcttcagagccttcttcattccgcactcaaccagacactcgagcac  15425000                                                                                          -----------     ---------->DOF2                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(s)                                 <---------ZAT14                             <---------- ----PIF5                                     --------->ZAT14             ---------->ID1 <---------ANAC46 --->PIF5         <---------At4g35610    <---------ETT(2)       <xxxxxxxxxxxxxxxxsmallRNA(i) ------ZmHOX2a(1) <---------ZAT2<---------ALFIN1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   -------   gaggaagaaaagaagactccagctactcactcgaccacttgggtcgactacagttcttaatccgtcccaatacttcgtcgttttataagtagcatgtact  15425100  Previous    Next  AGI:  At1g40076.1    Description:  transposable element gene. pseudogene, hypothetical protein, similar to contains similarity to Arabidopsis thaliana hypothetical protein (GB:AC004483) Range:  from: 15424628    to: 15425113    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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