Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------NtERF2                                                                         <---------MYB46(3)                           --------->ANAC58                     --------->HSFB2a(2)                           --------->ANAC58                    <---------LBD16                         <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------MYB46(3)<---------ANAC46                         ---------->DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------MYB52(2)      --------->At4g35610      --------->ALFIN1             ------------------------>ANAC81   <---------ZAT2 ------>ZmHOX2a(1)<-------TEIL      <---           <------ZmHOX2a(1)  ---------->DOF2  <---------At4g35610    --------->ALFIN1     ------>ZmHOX2a(2) ------->ANAC46  --------->ANAC58            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxx ------->ANAC58  --------->ANAC58          <-----------HVH21  ====================================HOX2a_HOX2a ------->ANAC58  --------->ANAC46   <xxxxxxxxxxxxxxxxsmallRNA(i)<---------HSFB2a(2)    ----------->HVH21   caagccattgaaaggatgcaggccaactaaagcaaagtagccaggcttcagctcatagtcgttcctctggaagggtgggggtacaatcgctgatcgatta  14473500                                                   <---------At4g35610                <------NtERF2                                                   <---------ZAT2                 <------MYB83                                                   --------->ZAT2                <---------AtMYB61                      <---------GLK1(1)     <---------ARR14(2)                  <--------P                 <-------GAMYB              --------->ARR14(2) --------->At4g35610<------MYB46(1)        <-----------HVH21           <---------TOE1(1)     <------ZmHOX2a(1)   <-----------RAV1(1)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------TOE2(1)  <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------YAB1 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->At4g35610        --------->ALFIN1 <----- xxxxxxxxxxxxxxsmallRNA(le3)       --------->SPL7  ----------->RAV1(2)<------ZmHOX2a(1)--------->ETT(2)   gcatagaacaggtcaggcctgttgaaatccccaagagtacgatgtggtttcgcagctggaggaatagctgcaggactctggtgttggtgtcgatcgagac  14473600                                                                     <-----------HVH21                                                                    <-----------RAV1(1)                                                                    <---------REM1(1)                                                                  <------MYB83                                                                 <---------AtMYB61                                                      <---------ETT(2)<------NtERF2                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                  --------->ETT(2)<------MYB46(1)                                         --------->LBD16         <---------MYB46(3)                                        <---------HSFB2a(2)     <---------MYB55(1)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <--------P               --------->At4g35610                   --------->ATHB12 <---------At4g35610   ------>NtERF2    <---------ETT(2)            ----------->HVH21--------->LBD16   --------->ALFIN1--------->ZAT2            --------->ZAT2        <---------MYB46(3) <---------LBD16--------->LBD16<---------ALFIN1  ----------->HVH21     <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ANAC58--------->ANAC58  <---------MYB52(1) <---------WOX13(1) --------->HSFB2a(2)--------->ANAC58--------->ANAC58   ------- ----ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <------NtERF2 <---------ZAT2  ------>NtERF2 --------   ctctgttttgtggttcgacactgattgcatccgcattttgctcccgaaggtgtcgatcgacacccagttggtgtcgctcgacaccgagacctgctgcatc  14473700                                                      <------ZmHOX2a(1)                                                     <------MYB46(1)                      <---------ANAC58        <---------MYB52(1)                      <---------ANAC58     <------NtERF2               <----------DOF2           <---------ANAC58            <---------ANAC58             <---------ANAC58            <---------ANAC46       --------->ATHB12  <------MYB83                                  xx    --------->At4g35610  --------->ZAT2  <---------RAP2.6(2)                                      <--    <---------At4g35610  <---------ZAT2  <---------ANAC46         <---------ARR11(3)              <-- >TEIL      <---------ANAC58      <-------TEIL------>ZmHOX2a(1)   --------->ARR11(3)       xxxxxxxxxx ->REM1(1) <---------LBD16    <---------ARR11(3)   <--------P    --------->YAB1            <xxxxxxxxx   tctagcagctaattgcgcattgaggcgagcttgatattcattggcgtccttaggtaggatgagtccatgatcatccaatctctgatcagcctcattgtag  14473800                                                                                       <---------ANAC58                                                                                       <---------ANAC58                                                                                       <---------ANAC46                                                                                      <---------ZAT18                                                                                      <-------TEIL                                                                                   <------MYB83                                                                                   <---------MYB46(3)                                                                                   <------MYB46(1)                                                                                   <---------DEAR3(2)                                                                                  --------->MYB111(1)                                                                                  --------->MYB55(2)                                                                                  --------->MYB46(2)                                                                                  <---------AtMYB61                                                                                  --------->MYB111(2)                                                                                  <---------MYB46(3)                                                                                  <---------DEAR3(1)            <---------CCA1(2)                   xxxxxxxxxxxxxxxx>smallRNA(s)      --------->ALFIN1         ------>ZmHOX2a(1)                     xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxxxxx        --------->TOE2(3)                --------->YAB1                          <---------MYB55(1) xxxxxxxxxxxxxx>smallRNA(s)           <----------DOF2                            <---------MYB52(1) -------ANAC58                      --------->At4g35610                          <--------P -------ANAC58xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------HVH21             <---------MYB52(1) xxxxxx>smallRNA(i)              <---------At4g35610          *TSS              <-------GAMYB xxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)  xxxxxxxxxxxxxxxx>smallRNA(s)      <---------MYB46(3)   gcttgcccatcctcatctctcaaaactccttctgcatcagctttgatgactctgtcagccattgctaatttctgagtttttcggttggtgcgttcaagtt  14473900                                                                                                    >                                                                                                    <                                                                                                    <                                                                                                    <           --------->ZAT14                                                                      -----        --------->LBD16                            <---------ANAC58                            ------       <---------HSFB2a(2)                 <---------At4g35610                               --------       --------->HSFB2a(2)      ------>ZmHOX2a(1)  <---------ANAC58                          --------  <---------ALFIN1             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            -------- xxxx>smallRNA(fl3)  <-------TEIL    <---------MYB52(1)                         ---------->DOF2<-----   ttcccaactccagaacagacaagttcataagctccttctgttttgtgctccttgtttgcctaggcatacacttgaaacacagaaaagaagaaaacaagaa  14474000                                                                                  ------>NtERF2                                                                   <---------ARR11(3) >>>>>>>CAMTA3                                                  --------->HSFB2a(2)<------NtERF2 ---------ANAC55(2)                                            --------->LBD16   --------->DEAR3(1) ---------ANAC58                                          --------->KAN4(2)     --------->RAP2.3(1) ---------ANAC58                                         <---------ICU4        <---------ATERF1(1) ---->CCA1(2)                                           --------->ICU4         <---------RAP2.3(1) --->ARR14(2)                                           <---------YAB1         ------->GAMYB ->ANAC58                     --------->ANAC58        --------->YAB1        --------->MYB52(1) ->ANAC58                     --------->ANAC58        <---------ICU4        <---------ATERF1(1) ->ANAC46                     --------->ANAC46       <---------ATHB12    --------->HSFB2a(2)   <----- ----ARR14(2)     ----------->GT1 <---------ARR11(3) --------->ICU4<<<<<<<ZML2<---------DEAR3(1)-----   acgcgtgagtaacaaaatagaagtaaaactagacgaaatctctaaacaaaactcaatgatgattccctagaacttcggcaacggcgccaaatttgatatg  14474100                                                                    <---------ARR11(3)                                                                    --------->ARR11(3)                                                  <---------TOE2(3)<---------GLK1(1)                                  <------ZmHOX2a(2)         <---------AHL20(2)                                  =========================HOX2a_HOX2a         --------->HSFB2a(2)     <---------ARR11(3)    ------>ZmHOX2a(2) ----------AtSPL8                --------->ARR11(3) <------ZmHOX2a(1) ------>GT1 <<<<<<<ZML2          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2 ----------->GT1   gttcaaattacctagaactactctctcaaataagagatcaattgcagtattttaggatcgaatttatggagttcttttgttcaaacaatgagttaaatgt  14474200                                                                                             <------ZmHOX2a(1)                                                                                            <------MYB83                                                             <---------ANAC58               <------MYB46(1)                  <---------YAB1         ----------->GT1     <---------ANAC58             <--------P          <---------ZAT2               ---------->DOF2      --------->ATHB12       ---------->DOF2          --------->ZAT2           <----------ID1         <---------WOX13(1)   <---------AHL20(2)     <---------TOE2(3)        ---------->DOF2  <---------AHL20(2)             --------->AHL20(2)     <---------TOE1(3)       --------->AHL20(2)--------->AHL20(2)       <---------DOF5.7(2)--------->MYB59   cgagattaaggtagcagggtatgagtgaaaataaaagagaacaaagtaaaaaaatagcagattgattgtgttgtaaacgatttaataaagaggtaggaac  14474300                              ------>ZmHOX2a(2)                                   <---------TOE2(3)                             <------ZmHOX2a(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->AGP1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <---------ARR14(2) <-------GAMYB                    <---------ICU4                   <---------MYB46(3)         --------->MYB111(2)               -------->HAHB4               --------->ATHB12              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------KAN4(2)         --------->ANAC58   --------->ARR11(3)<---------MYB46(3)               <---------ATHB51<-----         --------->ANAC46   <---------AGP1 <------MYB83 --------->MYB46(3)  <---------------AGL15 <--         --------->ANAC58   <---------ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(i)  --------------->AGL15 <--  <---------ARR14(2)   --------->MYB52(2)  <------MYB46(1)   --------->TOE2(3) --------->ICU4 -------  --------->ARR14(2) <--------P     ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <------   agggtattctcaagaaactattggttagtagatctaatgaaagctaggttgttatcgaaccattcttaaactcaaactctaattatggaataagcggtgg  14474400  Previous    Next  AGI:  At1g38423.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.7e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 14470257    to: 14473862    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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